The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
51
|
sequence length |
209
|
structure length |
205
|
Chain Sequence |
GKSAVIFVERATPATLTELKDALSNSILSVRDPWSIDFRTYRCSIKNLSKLMYSITFHHHGRQTVLIKDNSAMVTTAAAADIPPALVFNGSSTGVPESIDTILSSKLSNIWMQRQLIKGDAGETLILDGLTVRLVNLFSSTGFKGLLIELQADEAGEFETKIAGIEGHLAEIRAKEYKTSSDSLGPDTSNEICDLAYQYVRALEL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and TBP binding of the Mediator head subcomplex Med8-Med18-Med20.
pubmed doi rcsb |
| molecule keywords |
RNA polymerase II mediator complex subunit 20
|
| molecule tags |
Transcription
|
| source organism |
Saccharomyces cerevisiae
|
| total genus |
51
|
| structure length |
205
|
| sequence length |
209
|
| chains with identical sequence |
C, E, G
|
| ec nomenclature | |
| pdb deposition date | 2006-08-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08612 | Med20 | TATA-binding related factor (TRF) of subunit 20 of Mediator complex |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | q64v53_bacfr protein fold | q64v53_bacfr protein fold | ||
| Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | TATA-Binding Protein |
#chains in the Genus database with same CATH superfamily 2HZS A; 2HZM A; #chains in the Genus database with same CATH topology 2D0B A; 1LWY A; 3SNS A; 1YQK A; 2NOF A; 5BMN A; 2QR1 A; 5EPC A; 5IYB P; 1K2Y X; 1EUV A; 1UL7 A; 1TBA B; 2QRD A; 4HJH A; 4QG5 A; 4IL8 A; 1VOK A; 1YTF A; 3DPU A; 4Q11 A; 3H1Z A; 1MPG A; 2H4L X; 1W80 A; 1QNC A; 3F10 A; 1QNE A; 2EHB D; 1JDY A; 2Y8L A; 3PDK A; 3I0W A; 5BMP A; 2IV8 A; 1TUO A; 2QRE A; 1E42 A; 2V8Q A; 1NH2 A; 3RSM A; 1FN7 A; 1AIS A; 2HKP A; 1QN8 A; 2Z0F A; 5JMV D; 1QN4 A; 2FKM X; 4CFF A; 2RA8 A; 2G30 A; 1YQR A; 2YA3 A; 1N39 A; 1QN6 A; 1LWW A; 1KYD A; 3EAY A; 2OOX A; 2NOL A; 3N89 A; 1QNA A; 4D7Q A; 2HZM A; 1MP9 A; 3D4V A; 1CDW A; 1N3C A; 2NOH A; 3OH6 A; 2FGT A; 1D3U A; 2NOB A; 1QN5 A; 3OH9 A; 1PZD A; 4ROD B; 4EJZ A; 4WXA A; 1NVP A; 4I8O A; 2DKC A; 4D7R A; 5IYD P; 2HL8 A; 1PVS A; 3OCI A; 3OGD A; 1DIZ A; 2EOC A; 3CWT A; 1UT7 A; 1J3M A; 3NA5 A; 4EAL A; 1YQL A; 1KO9 A; 2OOY A; 4ROC B; 1QNB A; 1T6A A; 2JPI A; 3CWS A; 3T4N A; 3CWA A; 2DKA A; 2DKD A; 1B9K A; 2MZ8 A; 2QLV A; 1LXT A; 2JHJ A; 2V92 A; 1XSZ A; 3TE5 A; 1KYF A; 3ENO C; 3OSM A; 4ROE B; 4BJU A; 3D7Q A; 1HU0 A; 1NGM A; 2JOI A; 2FUV A; 1KY6 A; 5F9C A; 3C04 A; 1QN7 A; 2NOI A; 2ZFD B; 4EAJ A; 3F0Z A; 1R4X A; 4OPX C; 1TBP A; 1JFI C; 5KL0 A; 2LAE A; 2Z8U A; 1VTO A; 3HS9 A; 1TGH A; 5JN5 A; 2F7L A; 1UT4 A; 1V5S A; 2D0C A; 2I5W A; 4EAI A; 3HS8 A; 2NOE A; 1EBM A; 1YTB A; 3KRM A; 1M3Q A; 2O3O A; 4OQB C; 3CVS A; 1KFQ A; 1WJW A; 4TPS A; 2CR9 A; 2NLV A; 3VN5 A; 4EJY A; 3OSE A; 3CW7 A; 1WQA A; 5HSH A; 2NVM A; 2QRC A; 3DPT A; 3RPJ A; 3I0X A; 1N3A A; 2HZS A; 1PCJ X; 1PCM X; 3ENC A; 1QN9 A; 1C4G A; 1KY7 A; 4DQY C; 3I3W A; 3TDH A; 4B0A A; 1QTS A; 1VTL E; 1VOL B; 4EAK A; 3OST A; 1PCZ A; 2D0A A; 2H5A X; 4DUL A; 1QTP A; 1P5D X; 4WZS D; 3CWU A; 1Q9U A; 1QN3 A; 5AN4 A; 2HL9 A; 3BKQ X; 3OC3 C; 3IH7 A; 1M3H A; 1C47 A; 2FKF A; 2IV9 A; 4OQA C; 2JHN A; 1RM1 A; 2XHI A; 1K35 A; 1YQM A; 2V9J A; 2MJ7 A; 1C9B B; 3CVT A; 2NOZ A; 1KFI A; 2Y8Q A; 1P5G X; 1VKL A; 2R5X A; 2YH5 A; 4MRQ A; 4EAG A; 3PMG A; 3EIK A; 4C7P A; 1KYU A; 2VJ0 A; 2NWV A; 3ASM A; 3OLP A; 3ULX A; 3KTU A; 2PWW A; 1M5Q 1; 4PY5 A; 1LWV A; 3UW2 A; 4WX8 A; 5IYC P; #chains in the Genus database with same CATH homology 2D0B A; 1LWY A; 3SNS A; 1YQK A; 2NOF A; 5IYB P; 1TBA B; 1VOK A; 1YTF A; 3DPU A; 4Q11 A; 3H1Z A; 1QNC A; 1W80 A; 3F10 A; 1QNE A; 3I0W A; 2IV8 A; 1NH2 A; 1FN7 A; 1E42 A; 1QN8 A; 1AIS A; 1QN4 A; 2G30 A; 1YQR A; 1N39 A; 1QN6 A; 1LWW A; 1KYD A; 2NOL A; 3N89 A; 1QNA A; 2HZM A; 1MP9 A; 1CDW A; 1N3C A; 2NOH A; 2FGT A; 1D3U A; 2NOB A; 1QN5 A; 1PZD A; 4ROD B; 4EJZ A; 1NVP A; 4I8O A; 5IYD P; 3OCI A; 1UT7 A; 1YQL A; 1KO9 A; 4ROC B; 1QNB A; 1B9K A; 2MZ8 A; 1KYF A; 3OSM A; 4ROE B; 1HU0 A; 1NGM A; 2JOI A; 1KY6 A; 1QN7 A; 2NOI A; 3F0Z A; 1R4X A; 1TBP A; 1JFI C; 2LAE A; 2Z8U A; 1VTO A; 3HS9 A; 1TGH A; 1UT4 A; 2D0C A; 2I5W A; 3HS8 A; 2NOE A; 1EBM A; 1YTB A; 3KRM A; 1M3Q A; 2O3O A; 4TPS A; 3VN5 A; 4EJY A; 3DPT A; 3RPJ A; 3I0X A; 1N3A A; 2HZS A; 1QN9 A; 1KY7 A; 1VOL B; 1VTL E; 4B0A A; 1QTS A; 3OST A; 1PCZ A; 2D0A A; 4DUL A; 4WZS D; 1QTP A; 1QN3 A; 5AN4 A; 3IH7 A; 3OC3 C; 1M3H A; 2IV9 A; 1YQM A; 1RM1 A; 2XHI A; 2MJ7 A; 1C9B B; 2NOZ A; 2YH5 A; 3EIK A; 1KYU A; 2VJ0 A; 3ASM A; 3KTU A; 3ULX A; 4PY5 A; 1LWV A; 5IYC P;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
