2QR1A

Crystal structure of the adenylate sensor from amp-activated protein kinase in complex with adp
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
126
structure length
116
Chain Sequence
KWHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFMLDVKSNGYKDIYSHDLKSSFPFLDLCAMLVCKLFSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords SNF1-like protein kinase ssp2
publication title Structural Insight into AMPK Regulation: ADP Comes into Play.
pubmed doi rcsb
source organism Schizosaccharomyces pombe
molecule tags Transferase
total genus 32
structure length 116
sequence length 126
chains with identical sequence C
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2007-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16579 AdenylateSensor Adenylate sensor of SNF1-like protein kinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.80 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Kinase associated domain 1, KA1 2qr1A00
2EHBD 3TDHA 4EAKA 2OOYA 3T4NA 2QRDA 4EALA 2V9JA 2QREA 2QRCA 4EAGA 2OOXA 2QR1A 2ZFDB 1V5SA 3OSEA 2Y8LA 4EAIA 2V8QA 3TE5A 2V92A 2Y8QA 2YA3A 4CFFA 1UL7A 4EAJA 2QLVA
chains in the Genus database with same CATH superfamily
3I3WA 1KFIA 2MZ8A 5KL0A 1VOLB 1QN5A 2HL9A 2D0AA 4IL8A 1MP9A 2NOIA 3UW2A 3OSTA 1N3AA 1QN4A 1VTLE 1N39A 3H1ZA 2V9JA 3BKQX 2QREA 1C4GA 2O3OA 1B9KA 5HSHA 5IYBP 4EAGA 2OOXA 5BMNA 1YQLA 5IYCP 2ZFDB 1QN3A 4PY5A 1V5SA 2IV9A 2VJ0A 3I0XA 4ROEB 2Y8LA 4EAIA 4B0AA 1TBAB 3TE5A 2DKDA 2Y8QA 1AISA 1QNBA 2I5WA 3ASMA 4WXAA 1YQKA 3ULXA 3DPTA 1YTFA 4WX8A 2NOFA 4EAJA 1C47A 3CW7A 4EJZA 3NA5A 1DIZA 1M5Q1 3TDHA 4QG5A 4DULA 1P5GX 2NLVA 1R4XA 3CVSA 1QN8A 2OOYA 3C04A 1T6AA 3SNSA 2HL8A 2NVMA 1KY7A 3CWTA 3CWSA 1K2YX 2DKCA 2FUVA 1D3UA 4RODB 1M3HA 2QRCA 3ENOC 2D0CA 1QNCA 1KO9A 2QR1A 1NGMA 1TBPA 3DPUA 3OC3C 2PWWA 3PMGA 1NH2A 4Q11A 1HU0A 1XSZA 2H5AX 2HZSA 3OGDA 1WJWA 2Z8UA 3HS9A 4EJYA 1EBMA 2YA3A 2JPIA 4C7PA 4CFFA 2FGTA 1P5DX 1LWVA 1UL7A 3OH9A 2QLVA 2IV8A 3HS8A 4I8OA 2NOEA 3D4VA 1TGHA 3CWUA 3T4NA 1RM1A 4BJUA 1N3CA 1JDYA 2FKMX 3OH6A 1FN7A 1QNAA 2DKAA 5BMPA 1Q9UA 4EALA 3IH7A 3CVTA 1VKLA 2NWVA 4D7RA 2NOBA 2NOHA 1YQMA 2Z0FA 1PVSA 2D0BA 1KYFA 1VOKA 1VTOA 2G30A 5F9CA 1LXTA 1J3MA 3ENCA 1YQRA 1K35A 1CDWA 1EUVA 1E42A 3OSEA 2XHIA 2JOIA 4TPSA 2JHNA 3F10A 2H4LX 1KYUA 2YH5A 1LWYA 2JHJA 5AN4A 1QN7A 4WZSD 1UT7A 2F7LA 1PZDA 1C9BB 1WQAA 1MPGA 2EHBD 1UT4A 5JN5A 1KYDA 1W80A 4D7QA 3OCIA 1QTPA 3D7QA 3RSMA 4EAKA 1PCZA 4ROCB 2FKFA 2R5XA 1NVPA 3KRMA 1TUOA 1LWWA 3N89A 2NOLA 2QRDA 2NOZA 3I0WA 1QNEA 2HKPA 3VN5A 3OLPA 2LAEA 4MRQA 5JMVD 3CWAA 1JFIC 2MJ7A 5IYDP 5EPCA 1YTBA 3PDKA 4HJHA 2V8QA 3EAYA 1QTSA 1M3QA 2V92A 3F0ZA 3EIKA 2HZMA 3RPJA 3OSMA 1QN6A 1KY6A 1PCMX 1PCJX 1QN9A 3KTUA 1KFQA
chains in the Genus database with same CATH topology
2EHBD 3TDHA 4EAKA 2OOYA 3T4NA 2QRDA 4EALA 2V9JA 2QREA 2QRCA 4EAGA 2OOXA 2QR1A 2ZFDB 1V5SA 3OSEA 2Y8LA 4EAIA 2V8QA 3TE5A 2V92A 2Y8QA 2YA3A 4CFFA 1UL7A 4EAJA 2QLVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EHB D;  3TDH A;  4EAK A;  2OOY A;  3T4N A;  2QRD A;  4EAL A;  2V9J A;  2QRE A;  2QRC A;  4EAG A;  2OOX A;  2QR1 A;  2ZFD B;  1V5S A;  3OSE A;  2Y8L A;  4EAI A;  2V8Q A;  3TE5 A;  2V92 A;  2Y8Q A;  2YA3 A;  4CFF A;  1UL7 A;  4EAJ A;  2QLV A; 
#chains in the Genus database with same CATH topology
 3I3W A;  1KFI A;  2MZ8 A;  5KL0 A;  1VOL B;  1QN5 A;  2HL9 A;  2D0A A;  4IL8 A;  1MP9 A;  2NOI A;  3UW2 A;  3OST A;  1N3A A;  1QN4 A;  1VTL E;  1N39 A;  3H1Z A;  2V9J A;  3BKQ X;  2QRE A;  1C4G A;  2O3O A;  1B9K A;  5HSH A;  5IYB P;  4EAG A;  2OOX A;  5BMN A;  1YQL A;  5IYC P;  2ZFD B;  1QN3 A;  4PY5 A;  1V5S A;  2IV9 A;  2VJ0 A;  3I0X A;  4ROE B;  2Y8L A;  4EAI A;  4B0A A;  1TBA B;  3TE5 A;  2DKD A;  2Y8Q A;  1AIS A;  1QNB A;  2I5W A;  3ASM A;  4WXA A;  1YQK A;  3ULX A;  3DPT A;  1YTF A;  4WX8 A;  2NOF A;  4EAJ A;  1C47 A;  3CW7 A;  4EJZ A;  3NA5 A;  1DIZ A;  1M5Q 1;  3TDH A;  4QG5 A;  4DUL A;  1P5G X;  2NLV A;  1R4X A;  3CVS A;  1QN8 A;  2OOY A;  3C04 A;  1T6A A;  3SNS A;  2HL8 A;  2NVM A;  1KY7 A;  3CWT A;  3CWS A;  1K2Y X;  2DKC A;  2FUV A;  1D3U A;  4ROD B;  1M3H A;  2QRC A;  3ENO C;  2D0C A;  1QNC A;  1KO9 A;  2QR1 A;  1NGM A;  1TBP A;  3DPU A;  3OC3 C;  2PWW A;  3PMG A;  1NH2 A;  4Q11 A;  1HU0 A;  1XSZ A;  2H5A X;  2HZS A;  3OGD A;  1WJW A;  2Z8U A;  3HS9 A;  4EJY A;  1EBM A;  2YA3 A;  2JPI A;  4C7P A;  4CFF A;  2FGT A;  1P5D X;  1LWV A;  1UL7 A;  3OH9 A;  2QLV A;  2IV8 A;  3HS8 A;  4I8O A;  2NOE A;  3D4V A;  1TGH A;  3CWU A;  3T4N A;  1RM1 A;  4BJU A;  1N3C A;  1JDY A;  2FKM X;  3OH6 A;  1FN7 A;  1QNA A;  2DKA A;  5BMP A;  1Q9U A;  4EAL A;  3IH7 A;  3CVT A;  1VKL A;  2NWV A;  4D7R A;  2NOB A;  2NOH A;  1YQM A;  2Z0F A;  1PVS A;  2D0B A;  1KYF A;  1VOK A;  1VTO A;  2G30 A;  5F9C A;  1LXT A;  1J3M A;  3ENC A;  1YQR A;  1K35 A;  1CDW A;  1EUV A;  1E42 A;  3OSE A;  2XHI A;  2JOI A;  4TPS A;  2JHN A;  3F10 A;  2H4L X;  1KYU A;  2YH5 A;  1LWY A;  2JHJ A;  5AN4 A;  1QN7 A;  4WZS D;  1UT7 A;  2F7L A;  1PZD A;  1C9B B;  1WQA A;  1MPG A;  2EHB D;  1UT4 A;  5JN5 A;  1KYD A;  1W80 A;  4D7Q A;  3OCI A;  1QTP A;  3D7Q A;  3RSM A;  4EAK A;  1PCZ A;  4ROC B;  2FKF A;  2R5X A;  1NVP A;  3KRM A;  1TUO A;  1LWW A;  3N89 A;  2NOL A;  2QRD A;  2NOZ A;  3I0W A;  1QNE A;  2HKP A;  3VN5 A;  3OLP A;  2LAE A;  4MRQ A;  5JMV D;  3CWA A;  1JFI C;  2MJ7 A;  5IYD P;  5EPC A;  1YTB A;  3PDK A;  4HJH A;  2V8Q A;  3EAY A;  1QTS A;  1M3Q A;  2V92 A;  3F0Z A;  3EIK A;  2HZM A;  3RPJ A;  3OSM A;  1QN6 A;  1KY6 A;  1PCM X;  1PCJ X;  1QN9 A;  3KTU A;  1KFQ A; 
#chains in the Genus database with same CATH homology
 2EHB D;  3TDH A;  4EAK A;  2OOY A;  3T4N A;  2QRD A;  4EAL A;  2V9J A;  2QRE A;  2QRC A;  4EAG A;  2OOX A;  2QR1 A;  2ZFD B;  1V5S A;  3OSE A;  2Y8L A;  4EAI A;  2V8Q A;  3TE5 A;  2V92 A;  2Y8Q A;  2YA3 A;  4CFF A;  1UL7 A;  4EAJ A;  2QLV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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