2QR1A

Crystal structure of the adenylate sensor from amp-activated protein kinase in complex with adp
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
126
structure length
116
Chain Sequence
KWHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFMLDVKSNGYKDIYSHDLKSSFPFLDLCAMLVCKLFSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Schizosaccharomyces pombe
publication title Structural Insight into AMPK Regulation: ADP Comes into Play.
pubmed doi rcsb
molecule keywords SNF1-like protein kinase ssp2
total genus 32
structure length 116
sequence length 126
chains with identical sequence C
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2007-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16579 AdenylateSensor Adenylate sensor of SNF1-like protein kinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.80 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Kinase associated domain 1, KA1 2qr1A00
4EAGA 2QREA 2OOYA 4CFFA 4EALA 2QRCA 2QLVA 3TDHA 2V8QA 4EAIA 2Y8QA 2YA3A 3TE5A 4EAKA 3OSEA 1UL7A 2V92A 1V5SA 2V9JA 2ZFDB 2EHBD 2QRDA 2QR1A 2OOXA 4EAJA 3T4NA 2Y8LA
chains in the Genus database with same CATH superfamily
1N3AA 2NOEA 1QN9A 4QG5A 1VKLA 1YTBA 2D0BA 3F10A 5IYBP 1KY6A 1TBPA 1WQAA 2NOBA 3OGDA 3KTUA 4PY5A 4D7QA 1PZDA 1K35A 5AN4A 1UT7A 1JDYA 3HS9A 2NOLA 1PVSA 1CDWA 2FKFA 3NA5A 3N89A 4HJHA 4WZSD 1TGHA 4Q11A 3TE5A 1MP9A 1PCJX 4EAKA 4EJYA 2FKMX 3RSMA 3HS8A 3OSMA 2D0CA 2R5XA 1Q9UA 4WXAA 4ROEB 2MJ7A 2V92A 1P5DX 2D0AA 1YQRA 5EPCA 2JOIA 2V9JA 1N3CA 3ULXA 2QR1A 2H4LX 1VOKA 1KYFA 1KY7A 2OOYA 2Y8LA 3T4NA 3SNSA 1NH2A 1QN8A 2VJ0A 1NVPA 1QTPA 5BMPA 2NWVA 1AISA 4ROCB 3D7QA 2NLVA 2DKAA 4CFFA 2QRCA 2I5WA 5IYCP 1QN6A 4MRQA 1M3HA 3TDHA 1TUOA 1T6AA 2JHNA 2HL8A 1K2YX 3I0XA 1C47A 4EAIA 2NVMA 2FGTA 2YA3A 5HSHA 4B0AA 1C4GA 2JPIA 1MPGA 4TPSA 1LWVA 1JFIC 5IYDP 2YH5A 3ASMA 3OSTA 2JHJA 1EBMA 2LAEA 3D4VA 1C9BB 1VTLE 4RODB 2DKCA 1QNAA 1NGMA 2OOXA 1P5GX 1R4XA 2Z0FA 1V5SA 1QTSA 1KFIA 3C04A 1W80A 2XHIA 2FUVA 1M5Q1 3DPTA 3UW2A 3RPJA 4IL8A 4EALA 3EIKA 2QLVA 1QNCA 5KL0A 1EUVA 3F0ZA 3CVTA 1LXTA 3I0WA 1J3MA 3OH6A 1M3QA 1UT4A 1KO9A 2HKPA 1QN4A 3ENOC 1QNBA 5JMVD 1PCZA 3I3WA 2Y8QA 4EJZA 3PMGA 1QN3A 1B9KA 2G30A 3OSEA 3CWUA 2NOFA 3KRMA 3CVSA 1YTFA 1DIZA 1YQKA 3H1ZA 1QNEA 2EHBD 1LWYA 2HZSA 3OH9A 4EAJA 1RM1A 2F7LA 3OC3C 1YQMA 3ENCA 2DKDA 4C7PA 5F9CA 2MZ8A 3CW7A 2QREA 4D7RA 1QN7A 2PWWA 2IV8A 1N39A 1FN7A 3CWSA 2NOHA 3CWTA 3OCIA 2NOZA 2V8QA 2HL9A 1KYUA 2IV9A 3BKQX 1D3UA 1XSZA 2O3OA 3OLPA 1HU0A 3DPUA 2NOIA 2H5AX 1VOLB 4DULA 4I8OA 3PDKA 1YQLA 2HZMA 1E42A 1KFQA 4BJUA 1KYDA 5BMNA 4WX8A 1UL7A 3CWAA 3VN5A 5JN5A 1QN5A 2ZFDB 3IH7A 1TBAB 2QRDA 3EAYA 1VTOA 1PCMX 4EAGA 1WJWA 1LWWA 2Z8UA
chains in the Genus database with same CATH topology
4EAGA 2QREA 2OOYA 4CFFA 4EALA 2QRCA 2QLVA 3TDHA 2V8QA 4EAIA 2Y8QA 2YA3A 3TE5A 4EAKA 3OSEA 1UL7A 2V92A 1V5SA 2V9JA 2ZFDB 2EHBD 2QRDA 2QR1A 2OOXA 4EAJA 3T4NA 2Y8LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EAG A;  2QRE A;  2OOY A;  4CFF A;  4EAL A;  2QRC A;  2QLV A;  3TDH A;  2V8Q A;  4EAI A;  2Y8Q A;  2YA3 A;  3TE5 A;  4EAK A;  3OSE A;  1UL7 A;  2V92 A;  1V5S A;  2V9J A;  2ZFD B;  2EHB D;  2QRD A;  2QR1 A;  2OOX A;  4EAJ A;  3T4N A;  2Y8L A; 
#chains in the Genus database with same CATH topology
 1N3A A;  2NOE A;  1QN9 A;  4QG5 A;  1VKL A;  1YTB A;  2D0B A;  3F10 A;  5IYB P;  1KY6 A;  1TBP A;  1WQA A;  2NOB A;  3OGD A;  3KTU A;  4PY5 A;  4D7Q A;  1PZD A;  1K35 A;  5AN4 A;  1UT7 A;  1JDY A;  3HS9 A;  2NOL A;  1PVS A;  1CDW A;  2FKF A;  3NA5 A;  3N89 A;  4HJH A;  4WZS D;  1TGH A;  4Q11 A;  3TE5 A;  1MP9 A;  1PCJ X;  4EAK A;  4EJY A;  2FKM X;  3RSM A;  3HS8 A;  3OSM A;  2D0C A;  2R5X A;  1Q9U A;  4WXA A;  4ROE B;  2MJ7 A;  2V92 A;  1P5D X;  2D0A A;  1YQR A;  5EPC A;  2JOI A;  2V9J A;  1N3C A;  3ULX A;  2QR1 A;  2H4L X;  1VOK A;  1KYF A;  1KY7 A;  2OOY A;  2Y8L A;  3T4N A;  3SNS A;  1NH2 A;  1QN8 A;  2VJ0 A;  1NVP A;  1QTP A;  5BMP A;  2NWV A;  1AIS A;  4ROC B;  3D7Q A;  2NLV A;  2DKA A;  4CFF A;  2QRC A;  2I5W A;  5IYC P;  1QN6 A;  4MRQ A;  1M3H A;  3TDH A;  1TUO A;  1T6A A;  2JHN A;  2HL8 A;  1K2Y X;  3I0X A;  1C47 A;  4EAI A;  2NVM A;  2FGT A;  2YA3 A;  5HSH A;  4B0A A;  1C4G A;  2JPI A;  1MPG A;  4TPS A;  1LWV A;  1JFI C;  5IYD P;  2YH5 A;  3ASM A;  3OST A;  2JHJ A;  1EBM A;  2LAE A;  3D4V A;  1C9B B;  1VTL E;  4ROD B;  2DKC A;  1QNA A;  1NGM A;  2OOX A;  1P5G X;  1R4X A;  2Z0F A;  1V5S A;  1QTS A;  1KFI A;  3C04 A;  1W80 A;  2XHI A;  2FUV A;  1M5Q 1;  3DPT A;  3UW2 A;  3RPJ A;  4IL8 A;  4EAL A;  3EIK A;  2QLV A;  1QNC A;  5KL0 A;  1EUV A;  3F0Z A;  3CVT A;  1LXT A;  3I0W A;  1J3M A;  3OH6 A;  1M3Q A;  1UT4 A;  1KO9 A;  2HKP A;  1QN4 A;  3ENO C;  1QNB A;  5JMV D;  1PCZ A;  3I3W A;  2Y8Q A;  4EJZ A;  3PMG A;  1QN3 A;  1B9K A;  2G30 A;  3OSE A;  3CWU A;  2NOF A;  3KRM A;  3CVS A;  1YTF A;  1DIZ A;  1YQK A;  3H1Z A;  1QNE A;  2EHB D;  1LWY A;  2HZS A;  3OH9 A;  4EAJ A;  1RM1 A;  2F7L A;  3OC3 C;  1YQM A;  3ENC A;  2DKD A;  4C7P A;  5F9C A;  2MZ8 A;  3CW7 A;  2QRE A;  4D7R A;  1QN7 A;  2PWW A;  2IV8 A;  1N39 A;  1FN7 A;  3CWS A;  2NOH A;  3CWT A;  3OCI A;  2NOZ A;  2V8Q A;  2HL9 A;  1KYU A;  2IV9 A;  3BKQ X;  1D3U A;  1XSZ A;  2O3O A;  3OLP A;  1HU0 A;  3DPU A;  2NOI A;  2H5A X;  1VOL B;  4DUL A;  4I8O A;  3PDK A;  1YQL A;  2HZM A;  1E42 A;  1KFQ A;  4BJU A;  1KYD A;  5BMN A;  4WX8 A;  1UL7 A;  3CWA A;  3VN5 A;  5JN5 A;  1QN5 A;  2ZFD B;  3IH7 A;  1TBA B;  2QRD A;  3EAY A;  1VTO A;  1PCM X;  4EAG A;  1WJW A;  1LWW A;  2Z8U A; 
#chains in the Genus database with same CATH homology
 4EAG A;  2QRE A;  2OOY A;  4CFF A;  4EAL A;  2QRC A;  2QLV A;  3TDH A;  2V8Q A;  4EAI A;  2Y8Q A;  2YA3 A;  3TE5 A;  4EAK A;  3OSE A;  1UL7 A;  2V92 A;  1V5S A;  2V9J A;  2ZFD B;  2EHB D;  2QRD A;  2QR1 A;  2OOX A;  4EAJ A;  3T4N A;  2Y8L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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