The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
25
|
sequence length |
162
|
structure length |
139
|
Chain Sequence |
GIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPDWVLCRIYKKQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transcription
|
| source organism |
Arabidopsis thaliana
|
| publication title |
DNA binding by the plant-specific NAC transcription factors in crystal and solution: a firm link to WRKY and GCM transcription factors.
pubmed doi rcsb |
| molecule keywords |
NAC domain-containing protein 19
|
| total genus |
25
|
| structure length |
139
|
| sequence length |
162
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2012-02-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02365 | NAM | No apical meristem (NAM) protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | TATA-Binding Protein |
#chains in the Genus database with same CATH superfamily 1UT7 A; 3ULX A; 4DUL A; 1UT4 A; #chains in the Genus database with same CATH topology 2VJ0 A; 2JPI A; 1VTO A; 1N39 A; 2QLV A; 2YH5 A; 4WXA A; 5HSH A; 1QN4 A; 1Q9U A; 2Y8Q A; 1B9K A; 1KY7 A; 3N89 A; 5EPC A; 1LXT A; 1MPG A; 2HL9 A; 3RPJ A; 2DKD A; 2JHJ A; 3OGD A; 1YTB A; 3CVS A; 3CWT A; 1KFI A; 1YTF A; 1KO9 A; 5JMV D; 1K2Y X; 1WJW A; 1CDW A; 2NOB A; 2NOH A; 1C47 A; 1QN8 A; 3OSE A; 2IV9 A; 3I0W A; 4DUL A; 3I0X A; 1QN7 A; 4EAL A; 2NLV A; 1RM1 A; 5JN5 A; 1KYD A; 3EAY A; 2V9J A; 3HS9 A; 2DKC A; 2FKM X; 1KYF A; 1NGM A; 1DIZ A; 1N3A A; 4TPS A; 3EIK A; 2FKF A; 2H4L X; 2MJ7 A; 4BJU A; 1HU0 A; 3SNS A; 1YQM A; 1XSZ A; 3CVT A; 2NOI A; 2Y8L A; 2EHB D; 3ASM A; 3DPU A; 5AN4 A; 1E42 A; 3TE5 A; 3IH7 A; 1PZD A; 1VKL A; 1R4X A; 3UW2 A; 3ENO C; 1C4G A; 2HKP A; 5BMP A; 4ROD B; 3I3W A; 1W80 A; 1TGH A; 3OC3 C; 1KY6 A; 3H1Z A; 3OH6 A; 1J3M A; 4EAG A; 2FUV A; 2IV8 A; 2PWW A; 3F10 A; 3OST A; 3OSM A; 4MRQ A; 2YA3 A; 4WX8 A; 1QNB A; 2V8Q A; 1EBM A; 1NVP A; 1T6A A; 2H5A X; 1UT4 A; 4B0A A; 2QRE A; 5IYD P; 3PMG A; 1JDY A; 3ENC A; 1VTL E; 1M5Q 1; 2V92 A; 1PCJ X; 1TBP A; 1VOK A; 2Z0F A; 2HZS A; 3HS8 A; 1LWW A; 3PDK A; 2HL8 A; 4EJY A; 2QRC A; 3NA5 A; 2NWV A; 3KRM A; 3OH9 A; 1UT7 A; 2F7L A; 4CFF A; 4WZS D; 1PCZ A; 1UL7 A; 1KYU A; 2R5X A; 4IL8 A; 4QG5 A; 5BMN A; 3CWA A; 3CWS A; 1P5G X; 3DPT A; 1WQA A; 3OLP A; 2JHN A; 3T4N A; 4EAK A; 2OOX A; 1PCM X; 1QTS A; 3C04 A; 1D3U A; 1QNE A; 1FN7 A; 2NOL A; 2NVM A; 4Q11 A; 1QN9 A; 2DKA A; 1TUO A; 3VN5 A; 4D7R A; 1KFQ A; 5F9C A; 1QN5 A; 5IYC P; 1QNC A; 3RSM A; 2QR1 A; 5IYB P; 4EJZ A; 2NOF A; 2G30 A; 2NOE A; 1M3H A; 2I5W A; 1YQK A; 1K35 A; 1QTP A; 1QNA A; 2FGT A; 2O3O A; 3TDH A; 1EUV A; 3OCI A; 4PY5 A; 2JOI A; 1QN6 A; 3F0Z A; 1JFI C; 2NOZ A; 2OOY A; 3BKQ X; 4D7Q A; 4HJH A; 1V5S A; 2HZM A; 1N3C A; 4I8O A; 1P5D X; 3ULX A; 2XHI A; 1M3Q A; 1QN3 A; 2MZ8 A; 5KL0 A; 2QRD A; 3KTU A; 4ROC B; 1C9B B; 2D0C A; 3CWU A; 4ROE B; 1MP9 A; 1TBA B; 1LWV A; 2D0A A; 1YQL A; 1VOL B; 2ZFD B; 1LWY A; 2D0B A; 2Z8U A; 1AIS A; 4C7P A; 2LAE A; 3D7Q A; 1PVS A; 3CW7 A; 4EAI A; 3D4V A; 1NH2 A; 4EAJ A; 1YQR A; #chains in the Genus database with same CATH homology 2VJ0 A; 1VTO A; 1N39 A; 2YH5 A; 1QN4 A; 3N89 A; 1B9K A; 1KY7 A; 3RPJ A; 1YTB A; 1YTF A; 1KO9 A; 1CDW A; 2NOB A; 2NOH A; 1QN8 A; 2IV9 A; 3I0W A; 4DUL A; 3I0X A; 1QN7 A; 1RM1 A; 1KYD A; 3HS9 A; 1KYF A; 1NGM A; 1N3A A; 4TPS A; 3EIK A; 2MJ7 A; 1HU0 A; 3SNS A; 1YQM A; 2NOI A; 5AN4 A; 3ASM A; 3DPU A; 1E42 A; 3IH7 A; 1PZD A; 1R4X A; 4ROD B; 1W80 A; 1TGH A; 3OC3 C; 1KY6 A; 3H1Z A; 2IV8 A; 3F10 A; 3OST A; 3OSM A; 1QNB A; 1EBM A; 1NVP A; 1UT4 A; 4B0A A; 5IYD P; 1VTL E; 1VOK A; 1TBP A; 3HS8 A; 2HZS A; 1LWW A; 4EJY A; 3KRM A; 1UT7 A; 4WZS D; 1PCZ A; 1KYU A; 3DPT A; 1QTS A; 1D3U A; 1QNE A; 1FN7 A; 2NOL A; 4Q11 A; 1QN9 A; 1QN5 A; 1QNC A; 3VN5 A; 4EJZ A; 5IYC P; 5IYB P; 2NOF A; 2G30 A; 2NOE A; 1M3H A; 2I5W A; 1YQK A; 1QTP A; 1QNA A; 2FGT A; 2O3O A; 3OCI A; 4PY5 A; 2JOI A; 1QN6 A; 3F0Z A; 1JFI C; 2NOZ A; 2HZM A; 1N3C A; 4I8O A; 3ULX A; 2XHI A; 1M3Q A; 1QN3 A; 2MZ8 A; 3KTU A; 4ROC B; 1C9B B; 2D0C A; 4ROE B; 1MP9 A; 1TBA B; 1LWV A; 2D0A A; 1YQL A; 1VOL B; 1LWY A; 2D0B A; 2Z8U A; 1AIS A; 2LAE A; 1NH2 A; 1YQR A;
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