4WX8A

Crystal structure of binary complex gon7-pcc1
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
83
structure length
83
Chain Sequence
SLDHTLELKIPFETERQATIATKVLSPDPILKPQDFQVDYSSEKNVMLVQFRSIDDRVLRVGVSSIIDSIKTIVEAMDVLSHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
source organism Saccharomyces cerevisiae
publication title Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.
pubmed doi rcsb
molecule keywords EKC/KEOPS complex subunit PCC1
total genus 19
structure length 83
sequence length 83
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09341 Pcc1 Transcription factor Pcc1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 4wx8A00
1KFIA 1P5DX 3C04A 3NA5A 3I3WA 4WXAA 4BJUA 2FUVA 5BMNA 3PDKA 1WJWA 5JMVD 2F7LA 3ENOC 5KL0A 2Z0FA 5EPCA 1LXTA 1K35A 5BMPA 1C47A 4WX8A 3PMGA 2DKCA 2JPIA 1KFQA 3OLPA 2DKAA 5HSHA 5F9CA 1K2YX 3UW2A 5JN5A 4IL8A 1JDYA 1WQAA 2FKMX 1PCJX 1VKLA 2H5AX 4QG5A 4HJHA 2H4LX 3ENCA 4MRQA 3RSMA 2DKDA 1P5GX 2FKFA 1C4GA 1PCMX 1TUOA 3BKQX
chains in the Genus database with same CATH superfamily
1N3CA 3CWSA 4I8OA 3I0WA 1P5DX 3OSEA 3CWUA 3NA5A 1LWYA 1WJWA 4TPSA 5JMVD 1C9BB 3OSTA 2LAEA 1RM1A 2Z0FA 2MZ8A 2OOXA 5BMPA 2XHIA 1N39A 3VN5A 2JPIA 1KFQA 5IYCP 1B9KA 1QN4A 2DKAA 1KO9A 1KY7A 1UL7A 1K2YX 1EUVA 1JDYA 1WQAA 2FGTA 1VKLA 3CWAA 1E42A 1KYUA 1M3QA 3ENCA 1TBPA 3TDHA 3IH7A 2FKFA 1QTSA 1DIZA 1PCMX 1XSZA 3N89A 5IYBP 2D0AA 3TE5A 2OOYA 3ASMA 4CFFA 2Y8QA 1KY6A 3C04A 1KYDA 3I3WA 2HZMA 4EALA 2YH5A 5BMNA 2V92A 2YA3A 1PCZA 1YQRA 1VOKA 3ENOC 5KL0A 1QNCA 2EHBD 1V5SA 1C47A 4C7PA 4WX8A 4DULA 3PMGA 1CDWA 4EAGA 5IYDP 5HSHA 1VOLB 2V8QA 2JHNA 1R4XA 3RPJA 5F9CA 5JN5A 3CWTA 5AN4A 1PVSA 4ROCB 1FN7A 1D3UA 2NLVA 1YTFA 2H5AX 4WZSD 3KTUA 2IV8A 1NH2A 4HJHA 1JFIC 2H4LX 1TBAB 3DPUA 2G30A 3F10A 2DKDA 4EAKA 3OH6A 2IV9A 3I0XA 3CVSA 3D4VA 2V9JA 2PWWA 2Z8UA 4D7RA 1KFIA 4Q11A 4EAIA 1W80A 4D7QA 4WXAA 1QN5A 1QN6A 2NVMA 2D0BA 2F7LA 4PY5A 1UT4A 1LXTA 2HZSA 3D7QA 3EAYA 4EJYA 1J3MA 2HL9A 2QRDA 2DKCA 3OGDA 3OH9A 1UT7A 4B0AA 1QN9A 3T4NA 4RODB 2NOHA 2NOIA 4IL8A 1QN3A 2NOBA 2Y8LA 1HU0A 2NOLA 4QG5A 4MRQA 3RSMA 2NWVA 3EIKA 1P5GX 3H1ZA 3F0ZA 1TUOA 2JHJA 2QRCA 3BKQX 3KRMA 1TGHA 2JOIA 2ZFDB 1YQLA 1LWWA 4EJZA 1VTOA 4BJUA 1T6AA 2FUVA 2QLVA 3PDKA 3HS9A 2NOZA 1LWVA 3CVTA 2NOFA 1MP9A 1Q9UA 2R5XA 5EPCA 1K35A 2MJ7A 3OCIA 2VJ0A 3ULXA 3DPTA 3OC3C 1N3AA 2QREA 1PZDA 3CW7A 3OLPA 2NOEA 1KYFA 1YQMA 2HKPA 1QNBA 2QR1A 4EAJA 3UW2A 1M3HA 2D0CA 1AISA 2FKMX 1PCJX 4ROEB 1NVPA 2HL8A 2O3OA 1NGMA 1QNAA 2I5WA 3SNSA 1QNEA 1QN8A 1QN7A 1VTLE 1YQKA 1C4GA 3HS8A 1M5Q1 1YTBA 1MPGA 3OSMA 1EBMA 1QTPA
chains in the Genus database with same CATH topology
1KFIA 1P5DX 3C04A 3NA5A 3I3WA 4WXAA 4BJUA 2FUVA 5BMNA 3PDKA 1WJWA 5JMVD 2F7LA 3ENOC 5KL0A 2Z0FA 5EPCA 1LXTA 1K35A 5BMPA 1C47A 4WX8A 3PMGA 2DKCA 2JPIA 1KFQA 3OLPA 2DKAA 5HSHA 5F9CA 1K2YX 3UW2A 5JN5A 4IL8A 1JDYA 1WQAA 2FKMX 1PCJX 1VKLA 2H5AX 4QG5A 4HJHA 2H4LX 3ENCA 4MRQA 3RSMA 2DKDA 1P5GX 2FKFA 1C4GA 1PCMX 1TUOA 3BKQX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KFI A;  1P5D X;  3C04 A;  3NA5 A;  3I3W A;  4WXA A;  4BJU A;  2FUV A;  5BMN A;  3PDK A;  1WJW A;  5JMV D;  2F7L A;  3ENO C;  5KL0 A;  2Z0F A;  5EPC A;  1LXT A;  1K35 A;  5BMP A;  1C47 A;  4WX8 A;  3PMG A;  2DKC A;  2JPI A;  1KFQ A;  3OLP A;  2DKA A;  5HSH A;  5F9C A;  1K2Y X;  3UW2 A;  5JN5 A;  4IL8 A;  1JDY A;  1WQA A;  2FKM X;  1PCJ X;  1VKL A;  2H5A X;  4QG5 A;  4HJH A;  2H4L X;  3ENC A;  4MRQ A;  3RSM A;  2DKD A;  1P5G X;  2FKF A;  1C4G A;  1PCM X;  1TUO A;  3BKQ X; 
#chains in the Genus database with same CATH topology
 1N3C A;  3CWS A;  4I8O A;  3I0W A;  1P5D X;  3OSE A;  3CWU A;  3NA5 A;  1LWY A;  1WJW A;  4TPS A;  5JMV D;  1C9B B;  3OST A;  2LAE A;  1RM1 A;  2Z0F A;  2MZ8 A;  2OOX A;  5BMP A;  2XHI A;  1N39 A;  3VN5 A;  2JPI A;  1KFQ A;  5IYC P;  1B9K A;  1QN4 A;  2DKA A;  1KO9 A;  1KY7 A;  1UL7 A;  1K2Y X;  1EUV A;  1JDY A;  1WQA A;  2FGT A;  1VKL A;  3CWA A;  1E42 A;  1KYU A;  1M3Q A;  3ENC A;  1TBP A;  3TDH A;  3IH7 A;  2FKF A;  1QTS A;  1DIZ A;  1PCM X;  1XSZ A;  3N89 A;  5IYB P;  2D0A A;  3TE5 A;  2OOY A;  3ASM A;  4CFF A;  2Y8Q A;  1KY6 A;  3C04 A;  1KYD A;  3I3W A;  2HZM A;  4EAL A;  2YH5 A;  5BMN A;  2V92 A;  2YA3 A;  1PCZ A;  1YQR A;  1VOK A;  3ENO C;  5KL0 A;  1QNC A;  2EHB D;  1V5S A;  1C47 A;  4C7P A;  4WX8 A;  4DUL A;  3PMG A;  1CDW A;  4EAG A;  5IYD P;  5HSH A;  1VOL B;  2V8Q A;  2JHN A;  1R4X A;  3RPJ A;  5F9C A;  5JN5 A;  3CWT A;  5AN4 A;  1PVS A;  4ROC B;  1FN7 A;  1D3U A;  2NLV A;  1YTF A;  2H5A X;  4WZS D;  3KTU A;  2IV8 A;  1NH2 A;  4HJH A;  1JFI C;  2H4L X;  1TBA B;  3DPU A;  2G30 A;  3F10 A;  2DKD A;  4EAK A;  3OH6 A;  2IV9 A;  3I0X A;  3CVS A;  3D4V A;  2V9J A;  2PWW A;  2Z8U A;  4D7R A;  1KFI A;  4Q11 A;  4EAI A;  1W80 A;  4D7Q A;  4WXA A;  1QN5 A;  1QN6 A;  2NVM A;  2D0B A;  2F7L A;  4PY5 A;  1UT4 A;  1LXT A;  2HZS A;  3D7Q A;  3EAY A;  4EJY A;  1J3M A;  2HL9 A;  2QRD A;  2DKC A;  3OGD A;  3OH9 A;  1UT7 A;  4B0A A;  1QN9 A;  3T4N A;  4ROD B;  2NOH A;  2NOI A;  4IL8 A;  1QN3 A;  2NOB A;  2Y8L A;  1HU0 A;  2NOL A;  4QG5 A;  4MRQ A;  3RSM A;  2NWV A;  3EIK A;  1P5G X;  3H1Z A;  3F0Z A;  1TUO A;  2JHJ A;  2QRC A;  3BKQ X;  3KRM A;  1TGH A;  2JOI A;  2ZFD B;  1YQL A;  1LWW A;  4EJZ A;  1VTO A;  4BJU A;  1T6A A;  2FUV A;  2QLV A;  3PDK A;  3HS9 A;  2NOZ A;  1LWV A;  3CVT A;  2NOF A;  1MP9 A;  1Q9U A;  2R5X A;  5EPC A;  1K35 A;  2MJ7 A;  3OCI A;  2VJ0 A;  3ULX A;  3DPT A;  3OC3 C;  1N3A A;  2QRE A;  1PZD A;  3CW7 A;  3OLP A;  2NOE A;  1KYF A;  1YQM A;  2HKP A;  1QNB A;  2QR1 A;  4EAJ A;  3UW2 A;  1M3H A;  2D0C A;  1AIS A;  2FKM X;  1PCJ X;  4ROE B;  1NVP A;  2HL8 A;  2O3O A;  1NGM A;  1QNA A;  2I5W A;  3SNS A;  1QNE A;  1QN8 A;  1QN7 A;  1VTL E;  1YQK A;  1C4G A;  3HS8 A;  1M5Q 1;  1YTB A;  1MPG A;  3OSM A;  1EBM A;  1QTP A; 
#chains in the Genus database with same CATH homology
 1KFI A;  1P5D X;  3C04 A;  3NA5 A;  3I3W A;  4WXA A;  4BJU A;  2FUV A;  5BMN A;  3PDK A;  1WJW A;  5JMV D;  2F7L A;  3ENO C;  5KL0 A;  2Z0F A;  5EPC A;  1LXT A;  1K35 A;  5BMP A;  1C47 A;  4WX8 A;  3PMG A;  2DKC A;  2JPI A;  1KFQ A;  3OLP A;  2DKA A;  5HSH A;  5F9C A;  1K2Y X;  3UW2 A;  5JN5 A;  4IL8 A;  1JDY A;  1WQA A;  2FKM X;  1PCJ X;  1VKL A;  2H5A X;  4QG5 A;  4HJH A;  2H4L X;  3ENC A;  4MRQ A;  3RSM A;  2DKD A;  1P5G X;  2FKF A;  1C4G A;  1PCM X;  1TUO A;  3BKQ X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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