4WX8A

Crystal structure of binary complex gon7-pcc1
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
83
structure length
83
Chain Sequence
SLDHTLELKIPFETERQATIATKVLSPDPILKPQDFQVDYSSEKNVMLVQFRSIDDRVLRVGVSSIIDSIKTIVEAMDVLSHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords EKC/KEOPS complex subunit PCC1
publication title Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 19
structure length 83
sequence length 83
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09341 Pcc1 Transcription factor Pcc1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 4wx8A00
5KL0A 3RSMA 1K2YX 3PDKA 4WXAA 4WX8A 3ENOC 2DKAA 5JN5A 1P5GX 2H4LX 1K35A 3C04A 2H5AX 5BMNA 3NA5A 1PCJX 4MRQA 4HJHA 1VKLA 1JDYA 1WJWA 1C4GA 2DKDA 3BKQX 2FKFA 5F9CA 1C47A 4BJUA 3I3WA 1WQAA 1LXTA 2F7LA 2Z0FA 5JMVD 2JPIA 3ENCA 2FKMX 4QG5A 2DKCA 5BMPA 1KFIA 1TUOA 3OLPA 5HSHA 3PMGA 3UW2A 4IL8A 5EPCA 1P5DX 2FUVA 1PCMX 1KFQA
chains in the Genus database with same CATH superfamily
1QN5A 3KRMA 2HZMA 1NH2A 2HL8A 1T6AA 1P5GX 3TDHA 1PVSA 1QNBA 3RPJA 2H5AX 2QRDA 2XHIA 1LWWA 1YQLA 1MPGA 3ULXA 3DPUA 2LAEA 1N39A 1LWYA 2FKFA 1QTSA 3HS9A 3OSTA 3VN5A 1M5Q1 1QTPA 1C47A 1UL7A 2IV8A 2NLVA 2I5WA 2NOBA 2R5XA 1LXTA 3KTUA 2JPIA 1KY6A 3ENCA 2FKMX 3TE5A 1Q9UA 4QG5A 3EAYA 1DIZA 2D0BA 2NOHA 3CWTA 1YTBA 2FGTA 3PMGA 2QRCA 2ZFDB 4TPSA 4ROEB 1JFIC 1M3HA 1P5DX 1PCMX 1KFQA 1QN8A 2V9JA 3OC3C 1K2YX 4WX8A 2NOEA 2V92A 3I0XA 3N89A 2DKAA 4I8OA 2NOLA 2H4LX 2JHNA 2IV9A 3NA5A 1C9BB 1LWVA 3IH7A 4PY5A 1WJWA 3CVTA 2MJ7A 3BKQX 1QN6A 4EAGA 5F9CA 3OGDA 2NVMA 2F7LA 1QNAA 4ROCB 1TBPA 4EAIA 1V5SA 5BMPA 1E42A 1QNCA 1FN7A 1QN3A 1J3MA 3EIKA 4C7PA 4WZSD 3HS8A 1CDWA 2D0AA 4Q11A 4B0AA 1NVPA 5KL0A 2G30A 3RSMA 3PDKA 2PWWA 3ENOC 3SNSA 1YQKA 1UT4A 4CFFA 1K35A 2D0CA 3C04A 1R4XA 5BMNA 1N3CA 1B9KA 1PCZA 1TBAB 1EUVA 3OSEA 1KYFA 2OOXA 4MRQA 5IYCP 3OSMA 1KO9A 4HJHA 2Y8QA 2QLVA 1C4GA 3CVSA 1YQMA 1N3AA 2YH5A 1D3UA 5IYDP 2NOFA 2Y8LA 1UT7A 2QR1A 3I3WA 1QN4A 2Z0FA 1VTLE 1TGHA 2EHBD 1KYUA 5AN4A 4DULA 4EAKA 2NOZA 1VOKA 2V8QA 3CWUA 1AISA 1KFIA 1TUOA 3F10A 3OLPA 3T4NA 5HSHA 1M3QA 1YTFA 3D4VA 2O3OA 1NGMA 4IL8A 2MZ8A 5EPCA 1QNEA 3H1ZA 3CWSA 2FUVA 2JHJA 2HKPA 4EALA 2YA3A 4EJYA 4EJZA 4WXAA 1MP9A 4EAJA 4D7QA 5IYBP 5JN5A 3DPTA 1RM1A 1VOLB 2JOIA 2VJ0A 2QREA 1PCJX 3D7QA 3F0ZA 4RODB 1VKLA 1JDYA 2DKDA 1QN9A 2OOYA 3ASMA 4BJUA 2HL9A 3I0WA 1WQAA 3CWAA 2NWVA 4D7RA 1KYDA 5JMVD 1XSZA 3OCIA 1YQRA 1PZDA 1W80A 2DKCA 3CW7A 2HZSA 3OH9A 1EBMA 1HU0A 2Z8UA 3UW2A 1KY7A 1QN7A 3OH6A 1VTOA 2NOIA
chains in the Genus database with same CATH topology
5KL0A 3RSMA 1K2YX 3PDKA 4WXAA 4WX8A 3ENOC 2DKAA 5JN5A 1P5GX 2H4LX 1K35A 3C04A 2H5AX 5BMNA 3NA5A 1PCJX 4MRQA 4HJHA 1VKLA 1JDYA 1WJWA 1C4GA 2DKDA 3BKQX 2FKFA 5F9CA 1C47A 4BJUA 3I3WA 1WQAA 1LXTA 2F7LA 2Z0FA 5JMVD 2JPIA 3ENCA 2FKMX 4QG5A 2DKCA 5BMPA 1KFIA 1TUOA 3OLPA 5HSHA 3PMGA 3UW2A 4IL8A 5EPCA 1P5DX 2FUVA 1PCMX 1KFQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KL0 A;  3RSM A;  1K2Y X;  3PDK A;  4WXA A;  4WX8 A;  3ENO C;  2DKA A;  5JN5 A;  1P5G X;  2H4L X;  1K35 A;  3C04 A;  2H5A X;  5BMN A;  3NA5 A;  1PCJ X;  4MRQ A;  4HJH A;  1VKL A;  1JDY A;  1WJW A;  1C4G A;  2DKD A;  3BKQ X;  2FKF A;  5F9C A;  1C47 A;  4BJU A;  3I3W A;  1WQA A;  1LXT A;  2F7L A;  2Z0F A;  5JMV D;  2JPI A;  3ENC A;  2FKM X;  4QG5 A;  2DKC A;  5BMP A;  1KFI A;  1TUO A;  3OLP A;  5HSH A;  3PMG A;  3UW2 A;  4IL8 A;  5EPC A;  1P5D X;  2FUV A;  1PCM X;  1KFQ A; 
#chains in the Genus database with same CATH topology
 1QN5 A;  3KRM A;  2HZM A;  1NH2 A;  2HL8 A;  1T6A A;  1P5G X;  3TDH A;  1PVS A;  1QNB A;  3RPJ A;  2H5A X;  2QRD A;  2XHI A;  1LWW A;  1YQL A;  1MPG A;  3ULX A;  3DPU A;  2LAE A;  1N39 A;  1LWY A;  2FKF A;  1QTS A;  3HS9 A;  3OST A;  3VN5 A;  1M5Q 1;  1QTP A;  1C47 A;  1UL7 A;  2IV8 A;  2NLV A;  2I5W A;  2NOB A;  2R5X A;  1LXT A;  3KTU A;  2JPI A;  1KY6 A;  3ENC A;  2FKM X;  3TE5 A;  1Q9U A;  4QG5 A;  3EAY A;  1DIZ A;  2D0B A;  2NOH A;  3CWT A;  1YTB A;  2FGT A;  3PMG A;  2QRC A;  2ZFD B;  4TPS A;  4ROE B;  1JFI C;  1M3H A;  1P5D X;  1PCM X;  1KFQ A;  1QN8 A;  2V9J A;  3OC3 C;  1K2Y X;  4WX8 A;  2NOE A;  2V92 A;  3I0X A;  3N89 A;  2DKA A;  4I8O A;  2NOL A;  2H4L X;  2JHN A;  2IV9 A;  3NA5 A;  1C9B B;  1LWV A;  3IH7 A;  4PY5 A;  1WJW A;  3CVT A;  2MJ7 A;  3BKQ X;  1QN6 A;  4EAG A;  5F9C A;  3OGD A;  2NVM A;  2F7L A;  1QNA A;  4ROC B;  1TBP A;  4EAI A;  1V5S A;  5BMP A;  1E42 A;  1QNC A;  1FN7 A;  1QN3 A;  1J3M A;  3EIK A;  4C7P A;  4WZS D;  3HS8 A;  1CDW A;  2D0A A;  4Q11 A;  4B0A A;  1NVP A;  5KL0 A;  2G30 A;  3RSM A;  3PDK A;  2PWW A;  3ENO C;  3SNS A;  1YQK A;  1UT4 A;  4CFF A;  1K35 A;  2D0C A;  3C04 A;  1R4X A;  5BMN A;  1N3C A;  1B9K A;  1PCZ A;  1TBA B;  1EUV A;  3OSE A;  1KYF A;  2OOX A;  4MRQ A;  5IYC P;  3OSM A;  1KO9 A;  4HJH A;  2Y8Q A;  2QLV A;  1C4G A;  3CVS A;  1YQM A;  1N3A A;  2YH5 A;  1D3U A;  5IYD P;  2NOF A;  2Y8L A;  1UT7 A;  2QR1 A;  3I3W A;  1QN4 A;  2Z0F A;  1VTL E;  1TGH A;  2EHB D;  1KYU A;  5AN4 A;  4DUL A;  4EAK A;  2NOZ A;  1VOK A;  2V8Q A;  3CWU A;  1AIS A;  1KFI A;  1TUO A;  3F10 A;  3OLP A;  3T4N A;  5HSH A;  1M3Q A;  1YTF A;  3D4V A;  2O3O A;  1NGM A;  4IL8 A;  2MZ8 A;  5EPC A;  1QNE A;  3H1Z A;  3CWS A;  2FUV A;  2JHJ A;  2HKP A;  4EAL A;  2YA3 A;  4EJY A;  4EJZ A;  4WXA A;  1MP9 A;  4EAJ A;  4D7Q A;  5IYB P;  5JN5 A;  3DPT A;  1RM1 A;  1VOL B;  2JOI A;  2VJ0 A;  2QRE A;  1PCJ X;  3D7Q A;  3F0Z A;  4ROD B;  1VKL A;  1JDY A;  2DKD A;  1QN9 A;  2OOY A;  3ASM A;  4BJU A;  2HL9 A;  3I0W A;  1WQA A;  3CWA A;  2NWV A;  4D7R A;  1KYD A;  5JMV D;  1XSZ A;  3OCI A;  1YQR A;  1PZD A;  1W80 A;  2DKC A;  3CW7 A;  2HZS A;  3OH9 A;  1EBM A;  1HU0 A;  2Z8U A;  3UW2 A;  1KY7 A;  1QN7 A;  3OH6 A;  1VTO A;  2NOI A; 
#chains in the Genus database with same CATH homology
 5KL0 A;  3RSM A;  1K2Y X;  3PDK A;  4WXA A;  4WX8 A;  3ENO C;  2DKA A;  5JN5 A;  1P5G X;  2H4L X;  1K35 A;  3C04 A;  2H5A X;  5BMN A;  3NA5 A;  1PCJ X;  4MRQ A;  4HJH A;  1VKL A;  1JDY A;  1WJW A;  1C4G A;  2DKD A;  3BKQ X;  2FKF A;  5F9C A;  1C47 A;  4BJU A;  3I3W A;  1WQA A;  1LXT A;  2F7L A;  2Z0F A;  5JMV D;  2JPI A;  3ENC A;  2FKM X;  4QG5 A;  2DKC A;  5BMP A;  1KFI A;  1TUO A;  3OLP A;  5HSH A;  3PMG A;  3UW2 A;  4IL8 A;  5EPC A;  1P5D X;  2FUV A;  1PCM X;  1KFQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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