1NVPA

Human tfiia/tbp/dna complex
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
180
structure length
180
Chain Sequence
SGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-D(*GP*GP*GP*GP*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*G)-3'
publication title Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Transcription/dna
total genus 45
structure length 180
sequence length 180
ec nomenclature
pdb deposition date 2003-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1nvpA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1nvpA02
1QTSA 1KYDA 1NGMA 4ROEB 3HS9A 1CDWA 2IV9A 2D0BA 1AISA 1YTBA 1VTOA 1QNBA 1QNCA 3OCIA 4WZSD 3HS8A 2D0AA 1B9KA 1W80A 1QN3A 1KYFA 1QN8A 1QN4A 1QN5A 1KY7A 1VOKA 2G30A 3EIKA 5IYBP 4B0AA 1QN9A 4RODB 1R4XA 1NH2A 1E42A 1YTFA 1QNEA 1KYUA 1PCZA 2MJ7A 1C9BB 5IYDP 3OC3C 1TGHA 1VOLB 1QN6A 1PZDA 1MP9A 1VTLE 2Z8UA 1QNAA 1TBAB 1TBPA 1QN7A 3ASMA 1D3UA 1RM1A 2D0CA 1JFIC 2IV8A 3H1ZA 5IYCP 4PY5A 1NVPA 2VJ0A 3VN5A 1QTPA 1KY6A 4ROCB
chains in the Genus database with same CATH superfamily
1LWYA 2V92A 4EJYA 3RSMA 3C04A 1CDWA 2IV9A 2FKMX 5JMVD 1AISA 2NOHA 3I0XA 1VTOA 3PMGA 1V5SA 1QNBA 3OCIA 2D0AA 3BKQX 1LWVA 3CWTA 5EPCA 3SNSA 1P5GX 3ENCA 4B0AA 1HU0A 1QN9A 2NOBA 5F9CA 4EAKA 1C9BB 2FGTA 1TGHA 3NA5A 4EAGA 3CVSA 3F0ZA 1QNAA 3OH9A 2DKDA 4EALA 3CWUA 1N3AA 1QTPA 3CWSA 1KY6A 4QG5A 1M5Q1 1PVSA 2MZ8A 2QR1A 1KYDA 3N89A 1Q9UA 1YQLA 1C47A 2QREA 3HS9A 2QRDA 2H5AX 2Y8QA 2PWWA 2NOZA 1KFQA 5JN5A 1PCMX 1W80A 1XSZA 1P5DX 3OH6A 1LXTA 1QN5A 2NVMA 1VOKA 1QN8A 3ULXA 4DULA 3DPUA 1KO9A 2JOIA 5IYBP 4RODB 2JPIA 2DKCA 2V8QA 1YQRA 3TDHA 3UW2A 3CVTA 1PCZA 1N39A 5BMPA 1QN6A 3D4VA 5BMNA 4D7QA 1QN7A 3KRMA 4HJHA 1JFIC 2H4LX 1PCJX 4IL8A 1VKLA 5IYDP 2R5XA 3OSMA 1N3CA 2NOEA 1QTSA 2HZMA 2Y8LA 1NGMA 2JHNA 3CWAA 1YQKA 2D0BA 1YTBA 3RPJA 2NOIA 4I8OA 1QNCA 2HKPA 2F7LA 3HS8A 3EAYA 1B9KA 2DKAA 4Q11A 2YA3A 1QN3A 1MPGA 2NWVA 1KY7A 1T6AA 3EIKA 2NLVA 1WQAA 2EHBD 1R4XA 2LAEA 1E42A 4WX8A 2HL9A 1QNEA 3CW7A 3I0WA 3OC3C 3IH7A 4MRQA 1VOLB 1MP9A 1PZDA 2V9JA 2Z8UA 1VTLE 4BJUA 2Z0FA 3ENOC 3T4NA 2OOYA 3ASMA 4EAJA 3KTUA 1DIZA 2D0CA 2IV8A 5IYCP 1TUOA 1EBMA 2VJ0A 3F10A 2YH5A 1JDYA 2XHIA 2NOLA 1UT7A 4ROEB 3DPTA 4EJZA 2FKFA 3D7QA 3OGDA 2JHJA 1YQMA 1WJWA 2QRCA 1KFIA 3OLPA 3OSTA 4C7PA 4WZSD 1LWWA 1EUVA 1M3HA 5HSHA 3OSEA 5KL0A 1FN7A 2I5WA 1KYFA 2FUVA 2OOXA 1QN4A 5AN4A 1UT4A 2G30A 4D7RA 2HZSA 2ZFDB 3I3WA 1NH2A 1YTFA 4CFFA 3PDKA 1UL7A 1KYUA 4WXAA 2MJ7A 2O3OA 4EAIA 1K35A 2QLVA 3TE5A 1TBAB 1TBPA 1K2YX 4TPSA 1D3UA 2NOFA 1J3MA 1RM1A 1C4GA 4PY5A 3H1ZA 1NVPA 3VN5A 1M3QA 2HL8A 4ROCB
chains in the Genus database with same CATH topology
1LWYA 4EJYA 1CDWA 2IV9A 1AISA 2NOHA 3I0XA 1VTOA 1QNBA 3OCIA 2D0AA 1LWVA 3SNSA 4B0AA 1HU0A 1QN9A 2NOBA 1C9BB 2FGTA 1TGHA 3F0ZA 1QNAA 1N3AA 1QTPA 1KY6A 2MZ8A 1KYDA 3N89A 1YQLA 3HS9A 2NOZA 1W80A 1QN8A 1QN5A 1VOKA 4DULA 3ULXA 3DPUA 1KO9A 2JOIA 5IYBP 4RODB 1YQRA 1PCZA 1N39A 1QN6A 1QN7A 3KRMA 1JFIC 5IYDP 3OSMA 1N3CA 2NOEA 1QTSA 2HZMA 1NGMA 1YQKA 2D0BA 1YTBA 3RPJA 2NOIA 4I8OA 1QNCA 3HS8A 1B9KA 4Q11A 1QN3A 1KY7A 3EIKA 1R4XA 2LAEA 1E42A 1QNEA 3I0WA 3OC3C 3IH7A 1VOLB 1PZDA 1MP9A 1VTLE 2Z8UA 3KTUA 3ASMA 2D0CA 2IV8A 5IYCP 1EBMA 2VJ0A 3F10A 2YH5A 2XHIA 2NOLA 1UT7A 4ROEB 3DPTA 4EJZA 1YQMA 1LWWA 3OSTA 4WZSD 1M3HA 1FN7A 2I5WA 1KYFA 1QN4A 5AN4A 1UT4A 2G30A 2HZSA 1NH2A 1YTFA 1KYUA 2MJ7A 2O3OA 1TBAB 1TBPA 4TPSA 1D3UA 2NOFA 1RM1A 4PY5A 3H1ZA 1NVPA 3VN5A 1M3QA 4ROCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QTS A;  1KYD A;  1NGM A;  4ROE B;  3HS9 A;  1CDW A;  2IV9 A;  2D0B A;  1AIS A;  1YTB A;  1VTO A;  1QNB A;  1QNC A;  3OCI A;  4WZS D;  3HS8 A;  2D0A A;  1B9K A;  1W80 A;  1QN3 A;  1KYF A;  1QN8 A;  1QN4 A;  1QN5 A;  1KY7 A;  1VOK A;  2G30 A;  3EIK A;  5IYB P;  4B0A A;  1QN9 A;  4ROD B;  1R4X A;  1NH2 A;  1E42 A;  1YTF A;  1QNE A;  1KYU A;  1PCZ A;  2MJ7 A;  1C9B B;  5IYD P;  3OC3 C;  1TGH A;  1VOL B;  1QN6 A;  1PZD A;  1MP9 A;  1VTL E;  2Z8U A;  1QNA A;  1TBA B;  1TBP A;  1QN7 A;  3ASM A;  1D3U A;  1RM1 A;  2D0C A;  1JFI C;  2IV8 A;  3H1Z A;  5IYC P;  4PY5 A;  1NVP A;  2VJ0 A;  3VN5 A;  1QTP A;  1KY6 A;  4ROC B; 
#chains in the Genus database with same CATH topology
 1LWY A;  2V92 A;  4EJY A;  3RSM A;  3C04 A;  1CDW A;  2IV9 A;  2FKM X;  5JMV D;  1AIS A;  2NOH A;  3I0X A;  1VTO A;  3PMG A;  1V5S A;  1QNB A;  3OCI A;  2D0A A;  3BKQ X;  1LWV A;  3CWT A;  5EPC A;  3SNS A;  1P5G X;  3ENC A;  4B0A A;  1HU0 A;  1QN9 A;  2NOB A;  5F9C A;  4EAK A;  1C9B B;  2FGT A;  1TGH A;  3NA5 A;  4EAG A;  3CVS A;  3F0Z A;  1QNA A;  3OH9 A;  2DKD A;  4EAL A;  3CWU A;  1N3A A;  1QTP A;  3CWS A;  1KY6 A;  4QG5 A;  1M5Q 1;  1PVS A;  2MZ8 A;  2QR1 A;  1KYD A;  3N89 A;  1Q9U A;  1YQL A;  1C47 A;  2QRE A;  3HS9 A;  2QRD A;  2H5A X;  2Y8Q A;  2PWW A;  2NOZ A;  1KFQ A;  5JN5 A;  1PCM X;  1W80 A;  1XSZ A;  1P5D X;  3OH6 A;  1LXT A;  1QN5 A;  2NVM A;  1VOK A;  1QN8 A;  3ULX A;  4DUL A;  3DPU A;  1KO9 A;  2JOI A;  5IYB P;  4ROD B;  2JPI A;  2DKC A;  2V8Q A;  1YQR A;  3TDH A;  3UW2 A;  3CVT A;  1PCZ A;  1N39 A;  5BMP A;  1QN6 A;  3D4V A;  5BMN A;  4D7Q A;  1QN7 A;  3KRM A;  4HJH A;  1JFI C;  2H4L X;  1PCJ X;  4IL8 A;  1VKL A;  5IYD P;  2R5X A;  3OSM A;  1N3C A;  2NOE A;  1QTS A;  2HZM A;  2Y8L A;  1NGM A;  2JHN A;  3CWA A;  1YQK A;  2D0B A;  1YTB A;  3RPJ A;  2NOI A;  4I8O A;  1QNC A;  2HKP A;  2F7L A;  3HS8 A;  3EAY A;  1B9K A;  2DKA A;  4Q11 A;  2YA3 A;  1QN3 A;  1MPG A;  2NWV A;  1KY7 A;  1T6A A;  3EIK A;  2NLV A;  1WQA A;  2EHB D;  1R4X A;  2LAE A;  1E42 A;  4WX8 A;  2HL9 A;  1QNE A;  3CW7 A;  3I0W A;  3OC3 C;  3IH7 A;  4MRQ A;  1VOL B;  1MP9 A;  1PZD A;  2V9J A;  2Z8U A;  1VTL E;  4BJU A;  2Z0F A;  3ENO C;  3T4N A;  2OOY A;  3ASM A;  4EAJ A;  3KTU A;  1DIZ A;  2D0C A;  2IV8 A;  5IYC P;  1TUO A;  1EBM A;  2VJ0 A;  3F10 A;  2YH5 A;  1JDY A;  2XHI A;  2NOL A;  1UT7 A;  4ROE B;  3DPT A;  4EJZ A;  2FKF A;  3D7Q A;  3OGD A;  2JHJ A;  1YQM A;  1WJW A;  2QRC A;  1KFI A;  3OLP A;  3OST A;  4C7P A;  4WZS D;  1LWW A;  1EUV A;  1M3H A;  5HSH A;  3OSE A;  5KL0 A;  1FN7 A;  2I5W A;  1KYF A;  2FUV A;  2OOX A;  1QN4 A;  5AN4 A;  1UT4 A;  2G30 A;  4D7R A;  2HZS A;  2ZFD B;  3I3W A;  1NH2 A;  1YTF A;  4CFF A;  3PDK A;  1UL7 A;  1KYU A;  4WXA A;  2MJ7 A;  2O3O A;  4EAI A;  1K35 A;  2QLV A;  3TE5 A;  1TBA B;  1TBP A;  1K2Y X;  4TPS A;  1D3U A;  2NOF A;  1J3M A;  1RM1 A;  1C4G A;  4PY5 A;  3H1Z A;  1NVP A;  3VN5 A;  1M3Q A;  2HL8 A;  4ROC B; 
#chains in the Genus database with same CATH homology
 1LWY A;  4EJY A;  1CDW A;  2IV9 A;  1AIS A;  2NOH A;  3I0X A;  1VTO A;  1QNB A;  3OCI A;  2D0A A;  1LWV A;  3SNS A;  4B0A A;  1HU0 A;  1QN9 A;  2NOB A;  1C9B B;  2FGT A;  1TGH A;  3F0Z A;  1QNA A;  1N3A A;  1QTP A;  1KY6 A;  2MZ8 A;  1KYD A;  3N89 A;  1YQL A;  3HS9 A;  2NOZ A;  1W80 A;  1QN8 A;  1QN5 A;  1VOK A;  4DUL A;  3ULX A;  3DPU A;  1KO9 A;  2JOI A;  5IYB P;  4ROD B;  1YQR A;  1PCZ A;  1N39 A;  1QN6 A;  1QN7 A;  3KRM A;  1JFI C;  5IYD P;  3OSM A;  1N3C A;  2NOE A;  1QTS A;  2HZM A;  1NGM A;  1YQK A;  2D0B A;  1YTB A;  3RPJ A;  2NOI A;  4I8O A;  1QNC A;  3HS8 A;  1B9K A;  4Q11 A;  1QN3 A;  1KY7 A;  3EIK A;  1R4X A;  2LAE A;  1E42 A;  1QNE A;  3I0W A;  3OC3 C;  3IH7 A;  1VOL B;  1PZD A;  1MP9 A;  1VTL E;  2Z8U A;  3KTU A;  3ASM A;  2D0C A;  2IV8 A;  5IYC P;  1EBM A;  2VJ0 A;  3F10 A;  2YH5 A;  2XHI A;  2NOL A;  1UT7 A;  4ROE B;  3DPT A;  4EJZ A;  1YQM A;  1LWW A;  3OST A;  4WZS D;  1M3H A;  1FN7 A;  2I5W A;  1KYF A;  1QN4 A;  5AN4 A;  1UT4 A;  2G30 A;  2HZS A;  1NH2 A;  1YTF A;  1KYU A;  2MJ7 A;  2O3O A;  1TBA B;  1TBP A;  4TPS A;  1D3U A;  2NOF A;  1RM1 A;  4PY5 A;  3H1Z A;  1NVP A;  3VN5 A;  1M3Q A;  4ROC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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