1NVPA

Human tfiia/tbp/dna complex
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
180
structure length
180
Chain Sequence
SGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
source organism Homo sapiens
publication title Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes.
pubmed doi rcsb
molecule keywords 5'-D(*GP*GP*GP*GP*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*G)-3'
total genus 45
structure length 180
sequence length 180
ec nomenclature
pdb deposition date 2003-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1nvpA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1nvpA02
1QN6A 2VJ0A 1PZDA 3H1ZA 4RODB 1QNBA 1QTSA 5IYDP 1E42A 1B9KA 1QNCA 2D0BA 2IV9A 4B0AA 1CDWA 1D3UA 1YTBA 4WZSD 4PY5A 2D0AA 4ROEB 1RM1A 1VTOA 1QN5A 1QN3A 3ASMA 4ROCB 1NVPA 3OCIA 2D0CA 3HS8A 3OC3C 1QTPA 3HS9A 5IYCP 1PCZA 1TBAB 1VTLE 1KYDA 1KYUA 1KYFA 1QNEA 5IYBP 3VN5A 1QN9A 1VOLB 1KY7A 1QNAA 1VOKA 2MJ7A 1NH2A 1AISA 1NGMA 1R4XA 2G30A 2IV8A 1YTFA 1W80A 1C9BB 1QN8A 1KY6A 1QN4A 1QN7A 1MP9A 1TGHA 2Z8UA 1JFIC 3EIKA 1TBPA
chains in the Genus database with same CATH superfamily
3NA5A 4BJUA 3H1ZA 2NVMA 1P5GX 1QTSA 3OSEA 5IYDP 1B9KA 2V92A 2QRDA 2V8QA 2D0BA 2IV9A 4EAJA 2XHIA 4B0AA 1JDYA 2JOIA 3D7QA 3OSTA 3I0WA 1YTBA 4PY5A 3F0ZA 3RPJA 3BKQX 2ZFDB 1MPGA 4C7PA 4D7RA 1RM1A 5JN5A 1VTOA 4HJHA 1C4GA 1NVPA 3HS8A 3IH7A 5BMPA 1N39A 1PCZA 2NLVA 1KYDA 1YQMA 3D4VA 1WJWA 1KYFA 3ENOC 3RSMA 3VN5A 3KTUA 1DIZA 5F9CA 4EJZA 2HZMA 2YA3A 3KRMA 2JPIA 1KFIA 2G30A 2QREA 1YQLA 1P5DX 2NOIA 2FUVA 1W80A 1K35A 1K2YX 3DPTA 5EPCA 3SNSA 1C9BB 4TPSA 1QN7A 2NWVA 1TGHA 1VKLA 3EIKA 4EAKA 3CWSA 3I0XA 1QNCA 2QR1A 2F7LA 1PCJX 3CVTA 3CWAA 3CWUA 4D7QA 1QN5A 1LWVA 2DKDA 3ASMA 2YH5A 1VTLE 1LWYA 3F10A 3ULXA 2H5AX 3ENCA 1TBAB 2NOBA 1KYUA 1M3QA 2QRCA 2EHBD 1YQRA 3OLPA 1VOKA 2H4LX 2MJ7A 2Z0FA 3CVSA 2HL8A 4DULA 1UT4A 4IL8A 2Y8LA 1LWWA 3N89A 1KY6A 1M3HA 1EBMA 3PDKA 4CFFA 4EJYA 1QN6A 2VJ0A 2NOFA 4RODB 1YQKA 1QNBA 1E42A 1EUVA 3TDHA 2OOYA 1CDWA 3CWTA 1D3UA 3OGDA 3PMGA 4WZSD 2D0AA 2HKPA 4QG5A 4EAGA 4ROEB 1V5SA 2NOZA 1XSZA 3UW2A 2D0CA 1T6AA 1PVSA 1UT7A 2MZ8A 2Y8QA 2JHNA 5HSHA 2DKAA 1QNEA 5IYBP 3TE5A 3OH9A 1TUOA 1KY7A 4I8OA 1QN9A 1AISA 2I5WA 2NOEA 1N3AA 4MRQA 1LXTA 2DKCA 5JMVD 1QN8A 1QN4A 1FN7A 4EALA 4WXAA 2JHJA 1MP9A 1NH2A 2Z8UA 3DPUA 2LAEA 1TBPA 2V9JA 5KL0A 2FKFA 5BMNA 1Q9UA 1PZDA 1N3CA 4EAIA 1PCMX 1M5Q1 2R5XA 2O3OA 1HU0A 2HL9A 2HZSA 1KO9A 1KFQA 2QLVA 3I3WA 2NOHA 1QN3A 4ROCB 3OCIA 3OC3C 3CW7A 1WQAA 1QTPA 1J3MA 3C04A 3HS9A 5IYCP 2NOLA 2OOXA 1VOLB 3OSMA 4Q11A 1QNAA 1NGMA 1R4XA 2IV8A 2FKMX 5AN4A 1UL7A 1YTFA 2PWWA 3OH6A 4WX8A 1C47A 3EAYA 2FGTA 1JFIC 3T4NA
chains in the Genus database with same CATH topology
3H1ZA 1QTSA 5IYDP 1B9KA 2D0BA 2IV9A 2XHIA 4B0AA 2JOIA 3OSTA 3I0WA 1YTBA 4PY5A 3F0ZA 3RPJA 1RM1A 1VTOA 1NVPA 3HS8A 3IH7A 1N39A 1PCZA 1KYDA 1YQMA 1KYFA 3VN5A 3KTUA 4EJZA 2HZMA 3KRMA 2G30A 1YQLA 2NOIA 3DPTA 1W80A 3SNSA 1C9BB 4TPSA 1QN7A 1TGHA 3EIKA 3I0XA 1QNCA 1QN5A 1LWVA 3ASMA 2YH5A 1VTLE 1LWYA 3F10A 3ULXA 1TBAB 2NOBA 1KYUA 1M3QA 1YQRA 1VOKA 2MJ7A 4DULA 1UT4A 1LWWA 3N89A 1KY6A 1M3HA 1EBMA 4EJYA 1QN6A 2VJ0A 2NOFA 4RODB 1YQKA 1QNBA 1E42A 1CDWA 1D3UA 4WZSD 2D0AA 4ROEB 2NOZA 2D0CA 1UT7A 2MZ8A 1QNEA 5IYBP 1QN9A 2NOEA 4I8OA 1KY7A 2I5WA 1AISA 1N3AA 1QN8A 1QN4A 1FN7A 1MP9A 1NH2A 2Z8UA 3DPUA 2LAEA 1TBPA 1PZDA 1N3CA 2O3OA 1HU0A 2HZSA 1KO9A 2NOHA 1QN3A 4ROCB 3OCIA 3OC3C 1QTPA 3HS9A 5IYCP 2NOLA 1VOLB 3OSMA 4Q11A 1QNAA 1NGMA 1R4XA 2IV8A 5AN4A 1YTFA 2FGTA 1JFIC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QN6 A;  2VJ0 A;  1PZD A;  3H1Z A;  4ROD B;  1QNB A;  1QTS A;  5IYD P;  1E42 A;  1B9K A;  1QNC A;  2D0B A;  2IV9 A;  4B0A A;  1CDW A;  1D3U A;  1YTB A;  4WZS D;  4PY5 A;  2D0A A;  4ROE B;  1RM1 A;  1VTO A;  1QN5 A;  1QN3 A;  3ASM A;  4ROC B;  1NVP A;  3OCI A;  2D0C A;  3HS8 A;  3OC3 C;  1QTP A;  3HS9 A;  5IYC P;  1PCZ A;  1TBA B;  1VTL E;  1KYD A;  1KYU A;  1KYF A;  1QNE A;  5IYB P;  3VN5 A;  1QN9 A;  1VOL B;  1KY7 A;  1QNA A;  1VOK A;  2MJ7 A;  1NH2 A;  1AIS A;  1NGM A;  1R4X A;  2G30 A;  2IV8 A;  1YTF A;  1W80 A;  1C9B B;  1QN8 A;  1KY6 A;  1QN4 A;  1QN7 A;  1MP9 A;  1TGH A;  2Z8U A;  1JFI C;  3EIK A;  1TBP A; 
#chains in the Genus database with same CATH topology
 3NA5 A;  4BJU A;  3H1Z A;  2NVM A;  1P5G X;  1QTS A;  3OSE A;  5IYD P;  1B9K A;  2V92 A;  2QRD A;  2V8Q A;  2D0B A;  2IV9 A;  4EAJ A;  2XHI A;  4B0A A;  1JDY A;  2JOI A;  3D7Q A;  3OST A;  3I0W A;  1YTB A;  4PY5 A;  3F0Z A;  3RPJ A;  3BKQ X;  2ZFD B;  1MPG A;  4C7P A;  4D7R A;  1RM1 A;  5JN5 A;  1VTO A;  4HJH A;  1C4G A;  1NVP A;  3HS8 A;  3IH7 A;  5BMP A;  1N39 A;  1PCZ A;  2NLV A;  1KYD A;  1YQM A;  3D4V A;  1WJW A;  1KYF A;  3ENO C;  3RSM A;  3VN5 A;  3KTU A;  1DIZ A;  5F9C A;  4EJZ A;  2HZM A;  2YA3 A;  3KRM A;  2JPI A;  1KFI A;  2G30 A;  2QRE A;  1YQL A;  1P5D X;  2NOI A;  2FUV A;  1W80 A;  1K35 A;  1K2Y X;  3DPT A;  5EPC A;  3SNS A;  1C9B B;  4TPS A;  1QN7 A;  2NWV A;  1TGH A;  1VKL A;  3EIK A;  4EAK A;  3CWS A;  3I0X A;  1QNC A;  2QR1 A;  2F7L A;  1PCJ X;  3CVT A;  3CWA A;  3CWU A;  4D7Q A;  1QN5 A;  1LWV A;  2DKD A;  3ASM A;  2YH5 A;  1VTL E;  1LWY A;  3F10 A;  3ULX A;  2H5A X;  3ENC A;  1TBA B;  2NOB A;  1KYU A;  1M3Q A;  2QRC A;  2EHB D;  1YQR A;  3OLP A;  1VOK A;  2H4L X;  2MJ7 A;  2Z0F A;  3CVS A;  2HL8 A;  4DUL A;  1UT4 A;  4IL8 A;  2Y8L A;  1LWW A;  3N89 A;  1KY6 A;  1M3H A;  1EBM A;  3PDK A;  4CFF A;  4EJY A;  1QN6 A;  2VJ0 A;  2NOF A;  4ROD B;  1YQK A;  1QNB A;  1E42 A;  1EUV A;  3TDH A;  2OOY A;  1CDW A;  3CWT A;  1D3U A;  3OGD A;  3PMG A;  4WZS D;  2D0A A;  2HKP A;  4QG5 A;  4EAG A;  4ROE B;  1V5S A;  2NOZ A;  1XSZ A;  3UW2 A;  2D0C A;  1T6A A;  1PVS A;  1UT7 A;  2MZ8 A;  2Y8Q A;  2JHN A;  5HSH A;  2DKA A;  1QNE A;  5IYB P;  3TE5 A;  3OH9 A;  1TUO A;  1KY7 A;  4I8O A;  1QN9 A;  1AIS A;  2I5W A;  2NOE A;  1N3A A;  4MRQ A;  1LXT A;  2DKC A;  5JMV D;  1QN8 A;  1QN4 A;  1FN7 A;  4EAL A;  4WXA A;  2JHJ A;  1MP9 A;  1NH2 A;  2Z8U A;  3DPU A;  2LAE A;  1TBP A;  2V9J A;  5KL0 A;  2FKF A;  5BMN A;  1Q9U A;  1PZD A;  1N3C A;  4EAI A;  1PCM X;  1M5Q 1;  2R5X A;  2O3O A;  1HU0 A;  2HL9 A;  2HZS A;  1KO9 A;  1KFQ A;  2QLV A;  3I3W A;  2NOH A;  1QN3 A;  4ROC B;  3OCI A;  3OC3 C;  3CW7 A;  1WQA A;  1QTP A;  1J3M A;  3C04 A;  3HS9 A;  5IYC P;  2NOL A;  2OOX A;  1VOL B;  3OSM A;  4Q11 A;  1QNA A;  1NGM A;  1R4X A;  2IV8 A;  2FKM X;  5AN4 A;  1UL7 A;  1YTF A;  2PWW A;  3OH6 A;  4WX8 A;  1C47 A;  3EAY A;  2FGT A;  1JFI C;  3T4N A; 
#chains in the Genus database with same CATH homology
 3H1Z A;  1QTS A;  5IYD P;  1B9K A;  2D0B A;  2IV9 A;  2XHI A;  4B0A A;  2JOI A;  3OST A;  3I0W A;  1YTB A;  4PY5 A;  3F0Z A;  3RPJ A;  1RM1 A;  1VTO A;  1NVP A;  3HS8 A;  3IH7 A;  1N39 A;  1PCZ A;  1KYD A;  1YQM A;  1KYF A;  3VN5 A;  3KTU A;  4EJZ A;  2HZM A;  3KRM A;  2G30 A;  1YQL A;  2NOI A;  3DPT A;  1W80 A;  3SNS A;  1C9B B;  4TPS A;  1QN7 A;  1TGH A;  3EIK A;  3I0X A;  1QNC A;  1QN5 A;  1LWV A;  3ASM A;  2YH5 A;  1VTL E;  1LWY A;  3F10 A;  3ULX A;  1TBA B;  2NOB A;  1KYU A;  1M3Q A;  1YQR A;  1VOK A;  2MJ7 A;  4DUL A;  1UT4 A;  1LWW A;  3N89 A;  1KY6 A;  1M3H A;  1EBM A;  4EJY A;  1QN6 A;  2VJ0 A;  2NOF A;  4ROD B;  1YQK A;  1QNB A;  1E42 A;  1CDW A;  1D3U A;  4WZS D;  2D0A A;  4ROE B;  2NOZ A;  2D0C A;  1UT7 A;  2MZ8 A;  1QNE A;  5IYB P;  1QN9 A;  2NOE A;  4I8O A;  1KY7 A;  2I5W A;  1AIS A;  1N3A A;  1QN8 A;  1QN4 A;  1FN7 A;  1MP9 A;  1NH2 A;  2Z8U A;  3DPU A;  2LAE A;  1TBP A;  1PZD A;  1N3C A;  2O3O A;  1HU0 A;  2HZS A;  1KO9 A;  2NOH A;  1QN3 A;  4ROC B;  3OCI A;  3OC3 C;  1QTP A;  3HS9 A;  5IYC P;  2NOL A;  1VOL B;  3OSM A;  4Q11 A;  1QNA A;  1NGM A;  1R4X A;  2IV8 A;  5AN4 A;  1YTF A;  2FGT A;  1JFI C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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