3OC3C

Crystal structure of the mot1 n-terminal domain in complex with tbp
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
178
structure length
178
Chain Sequence
SGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/transcription
source organism Encephalitozoon cuniculi
publication title Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP.
pubmed doi rcsb
molecule keywords HELICASE MOT1
total genus 42
structure length 178
sequence length 178
chains with identical sequence D
ec nomenclature
pdb deposition date 2010-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 3oc3C01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 3oc3C02
4WZSD 1KY7A 1JFIC 1R4XA 1QNAA 1QNEA 1YTFA 2IV8A 5IYBP 1C9BB 4ROCB 1NH2A 1RM1A 1QN5A 1E42A 4ROEB 1NVPA 4B0AA 1KYDA 2VJ0A 1D3UA 1QTSA 2D0AA 2G30A 1QN8A 1YTBA 1KYFA 1QNCA 3H1ZA 3HS8A 1TBAB 5IYCP 1QN7A 1QN9A 4PY5A 1B9KA 2D0CA 5IYDP 1QNBA 1VTOA 1QN4A 3OCIA 1QN3A 1TGHA 1PCZA 1QTPA 3EIKA 1QN6A 1NGMA 2IV9A 1VOKA 1CDWA 1VTLE 1PZDA 2D0BA 1KY6A 1TBPA 1KYUA 1MP9A 3ASMA 3HS9A 3OC3C 2Z8UA 4RODB 1AISA 2MJ7A 1VOLB 1W80A 3VN5A
chains in the Genus database with same CATH superfamily
4MRQA 4WZSD 2NOHA 4EJYA 1JFIC 3DPUA 1QNAA 2HL8A 1EBMA 2IV8A 5IYBP 4ROCB 1NH2A 1QN5A 5JN5A 3ENCA 4QG5A 1NVPA 2F7LA 2QLVA 4Q11A 3RSMA 3IH7A 1QN8A 1N39A 3N89A 2OOXA 3T4NA 1YTBA 2Y8QA 4EAKA 1TBAB 5IYCP 1QN7A 1QN9A 1PVSA 2NWVA 5HSHA 4WX8A 1TGHA 3OCIA 5KL0A 2DKDA 1YQKA 1C47A 3I0WA 4CFFA 1MP9A 2V92A 2NOBA 2Z8UA 3F0ZA 4RODB 3BKQX 4D7RA 1DIZA 1M5Q1 1T6AA 2HZSA 1LXTA 1QTSA 2NOIA 1M3HA 3PMGA 1KY7A 4HJHA 2V9JA 1R4XA 3CWUA 1QNEA 2NLVA 1YTFA 2NOFA 1N3CA 1KFQA 1E42A 2HL9A 2QREA 4ROEB 1KFIA 2QR1A 1KYDA 2VJ0A 2JOIA 5AN4A 5BMPA 3D4VA 3ENOC 3D7QA 2D0AA 3CWTA 3CW7A 4DULA 4C7PA 1LWYA 3CWAA 4I8OA 2NOEA 2OOYA 4PY5A 1B9KA 3TE5A 1LWWA 1QN3A 1PCZA 2IV9A 2FUVA 4WXAA 1VTLE 1C4GA 1EUVA 3OC3C 3I0XA 1JDYA 3HS9A 3OSMA 4IL8A 1UL7A 1XSZA 2MJ7A 3KTUA 2XHIA 3UW2A 1W80A 1N3AA 3VN5A 1YQRA 5F9CA 1YQMA 2QRDA 4BJUA 3PDKA 4EJZA 3I3WA 2H4LX 2PWWA 3F10A 2I5WA 3CVSA 4B0AA 3KRMA 1K2YX 1D3UA 1WJWA 2V8QA 2G30A 2HKPA 3OH6A 1Q9UA 2FKFA 3H1ZA 3HS8A 3OLPA 1UT7A 4EALA 3OSEA 2D0CA 1M3QA 1QNBA 1QN4A 5EPCA 3OSTA 1J3MA 2ZFDB 3EIKA 3NA5A 2EHBD 1PCMX 3ULXA 1KO9A 1VOKA 3C04A 3CVTA 2LAEA 3OH9A 1PZDA 2YA3A 1TBPA 3ASMA 1KYUA 2JHJA 1TUOA 1FN7A 1VOLB 3CWSA 2NOLA 2NOZA 2MZ8A 3RPJA 2FGTA 1PCJX 2Y8LA 2QRCA 2NVMA 1UT4A 2O3OA 4EAJA 1C9BB 1HU0A 3TDHA 1MPGA 1RM1A 1P5DX 1K35A 2YH5A 1YQLA 2JHNA 2FKMX 1KYFA 5BMNA 1QNCA 1P5GX 3OGDA 5JMVD 2DKCA 5IYDP 1VTOA 4EAIA 1QTPA 1QN6A 1NGMA 2HZMA 3DPTA 1CDWA 2R5XA 4EAGA 1V5SA 2D0BA 1KY6A 2H5AX 2DKAA 2JPIA 4TPSA 1AISA 1WQAA 2Z0FA 3SNSA 1VKLA 4D7QA 3EAYA 1LWVA
chains in the Genus database with same CATH topology
4WZSD 2NOHA 4EJYA 1JFIC 3DPUA 1QNAA 1EBMA 2IV8A 5IYBP 4ROCB 1NH2A 1QN5A 1NVPA 4Q11A 3IH7A 1QN8A 1N39A 3N89A 1YTBA 1TBAB 5IYCP 1QN7A 1QN9A 1TGHA 3OCIA 1YQKA 3I0WA 1MP9A 2NOBA 2Z8UA 3F0ZA 4RODB 2HZSA 1QTSA 2NOIA 1M3HA 1KY7A 1R4XA 1QNEA 1YTFA 2NOFA 1N3CA 1E42A 4ROEB 1KYDA 2VJ0A 2JOIA 5AN4A 2D0AA 4DULA 1LWYA 4I8OA 2NOEA 4PY5A 1B9KA 1LWWA 1QN3A 1PCZA 2IV9A 1VTLE 3I0XA 3OC3C 3HS9A 3OSMA 2MJ7A 3KTUA 2XHIA 1W80A 1N3AA 3VN5A 1YQRA 1YQMA 4EJZA 3F10A 2I5WA 4B0AA 3KRMA 1D3UA 2G30A 3H1ZA 3HS8A 1UT7A 2D0CA 1M3QA 1QNBA 1QN4A 3OSTA 3EIKA 3ULXA 1VOKA 1KO9A 2LAEA 1PZDA 1TBPA 3ASMA 1KYUA 1FN7A 1VOLB 2NOZA 2NOLA 2MZ8A 3RPJA 2FGTA 1UT4A 2O3OA 1C9BB 1HU0A 1RM1A 2YH5A 1YQLA 1KYFA 1QNCA 5IYDP 1VTOA 1QTPA 1QN6A 1NGMA 2HZMA 3DPTA 1CDWA 2D0BA 1KY6A 4TPSA 1AISA 3SNSA 1LWVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WZS D;  1KY7 A;  1JFI C;  1R4X A;  1QNA A;  1QNE A;  1YTF A;  2IV8 A;  5IYB P;  1C9B B;  4ROC B;  1NH2 A;  1RM1 A;  1QN5 A;  1E42 A;  4ROE B;  1NVP A;  4B0A A;  1KYD A;  2VJ0 A;  1D3U A;  1QTS A;  2D0A A;  2G30 A;  1QN8 A;  1YTB A;  1KYF A;  1QNC A;  3H1Z A;  3HS8 A;  1TBA B;  5IYC P;  1QN7 A;  1QN9 A;  4PY5 A;  1B9K A;  2D0C A;  5IYD P;  1QNB A;  1VTO A;  1QN4 A;  3OCI A;  1QN3 A;  1TGH A;  1PCZ A;  1QTP A;  3EIK A;  1QN6 A;  1NGM A;  2IV9 A;  1VOK A;  1CDW A;  1VTL E;  1PZD A;  2D0B A;  1KY6 A;  1TBP A;  1KYU A;  1MP9 A;  3ASM A;  3HS9 A;  3OC3 C;  2Z8U A;  4ROD B;  1AIS A;  2MJ7 A;  1VOL B;  1W80 A;  3VN5 A; 
#chains in the Genus database with same CATH topology
 4MRQ A;  4WZS D;  2NOH A;  4EJY A;  1JFI C;  3DPU A;  1QNA A;  2HL8 A;  1EBM A;  2IV8 A;  5IYB P;  4ROC B;  1NH2 A;  1QN5 A;  5JN5 A;  3ENC A;  4QG5 A;  1NVP A;  2F7L A;  2QLV A;  4Q11 A;  3RSM A;  3IH7 A;  1QN8 A;  1N39 A;  3N89 A;  2OOX A;  3T4N A;  1YTB A;  2Y8Q A;  4EAK A;  1TBA B;  5IYC P;  1QN7 A;  1QN9 A;  1PVS A;  2NWV A;  5HSH A;  4WX8 A;  1TGH A;  3OCI A;  5KL0 A;  2DKD A;  1YQK A;  1C47 A;  3I0W A;  4CFF A;  1MP9 A;  2V92 A;  2NOB A;  2Z8U A;  3F0Z A;  4ROD B;  3BKQ X;  4D7R A;  1DIZ A;  1M5Q 1;  1T6A A;  2HZS A;  1LXT A;  1QTS A;  2NOI A;  1M3H A;  3PMG A;  1KY7 A;  4HJH A;  2V9J A;  1R4X A;  3CWU A;  1QNE A;  2NLV A;  1YTF A;  2NOF A;  1N3C A;  1KFQ A;  1E42 A;  2HL9 A;  2QRE A;  4ROE B;  1KFI A;  2QR1 A;  1KYD A;  2VJ0 A;  2JOI A;  5AN4 A;  5BMP A;  3D4V A;  3ENO C;  3D7Q A;  2D0A A;  3CWT A;  3CW7 A;  4DUL A;  4C7P A;  1LWY A;  3CWA A;  4I8O A;  2NOE A;  2OOY A;  4PY5 A;  1B9K A;  3TE5 A;  1LWW A;  1QN3 A;  1PCZ A;  2IV9 A;  2FUV A;  4WXA A;  1VTL E;  1C4G A;  1EUV A;  3OC3 C;  3I0X A;  1JDY A;  3HS9 A;  3OSM A;  4IL8 A;  1UL7 A;  1XSZ A;  2MJ7 A;  3KTU A;  2XHI A;  3UW2 A;  1W80 A;  1N3A A;  3VN5 A;  1YQR A;  5F9C A;  1YQM A;  2QRD A;  4BJU A;  3PDK A;  4EJZ A;  3I3W A;  2H4L X;  2PWW A;  3F10 A;  2I5W A;  3CVS A;  4B0A A;  3KRM A;  1K2Y X;  1D3U A;  1WJW A;  2V8Q A;  2G30 A;  2HKP A;  3OH6 A;  1Q9U A;  2FKF A;  3H1Z A;  3HS8 A;  3OLP A;  1UT7 A;  4EAL A;  3OSE A;  2D0C A;  1M3Q A;  1QNB A;  1QN4 A;  5EPC A;  3OST A;  1J3M A;  2ZFD B;  3EIK A;  3NA5 A;  2EHB D;  1PCM X;  3ULX A;  1KO9 A;  1VOK A;  3C04 A;  3CVT A;  2LAE A;  3OH9 A;  1PZD A;  2YA3 A;  1TBP A;  3ASM A;  1KYU A;  2JHJ A;  1TUO A;  1FN7 A;  1VOL B;  3CWS A;  2NOL A;  2NOZ A;  2MZ8 A;  3RPJ A;  2FGT A;  1PCJ X;  2Y8L A;  2QRC A;  2NVM A;  1UT4 A;  2O3O A;  4EAJ A;  1C9B B;  1HU0 A;  3TDH A;  1MPG A;  1RM1 A;  1P5D X;  1K35 A;  2YH5 A;  1YQL A;  2JHN A;  2FKM X;  1KYF A;  5BMN A;  1QNC A;  1P5G X;  3OGD A;  5JMV D;  2DKC A;  5IYD P;  1VTO A;  4EAI A;  1QTP A;  1QN6 A;  1NGM A;  2HZM A;  3DPT A;  1CDW A;  2R5X A;  4EAG A;  1V5S A;  2D0B A;  1KY6 A;  2H5A X;  2DKA A;  2JPI A;  4TPS A;  1AIS A;  1WQA A;  2Z0F A;  3SNS A;  1VKL A;  4D7Q A;  3EAY A;  1LWV A; 
#chains in the Genus database with same CATH homology
 4WZS D;  2NOH A;  4EJY A;  1JFI C;  3DPU A;  1QNA A;  1EBM A;  2IV8 A;  5IYB P;  4ROC B;  1NH2 A;  1QN5 A;  1NVP A;  4Q11 A;  3IH7 A;  1QN8 A;  1N39 A;  3N89 A;  1YTB A;  1TBA B;  5IYC P;  1QN7 A;  1QN9 A;  1TGH A;  3OCI A;  1YQK A;  3I0W A;  1MP9 A;  2NOB A;  2Z8U A;  3F0Z A;  4ROD B;  2HZS A;  1QTS A;  2NOI A;  1M3H A;  1KY7 A;  1R4X A;  1QNE A;  1YTF A;  2NOF A;  1N3C A;  1E42 A;  4ROE B;  1KYD A;  2VJ0 A;  2JOI A;  5AN4 A;  2D0A A;  4DUL A;  1LWY A;  4I8O A;  2NOE A;  4PY5 A;  1B9K A;  1LWW A;  1QN3 A;  1PCZ A;  2IV9 A;  1VTL E;  3I0X A;  3OC3 C;  3HS9 A;  3OSM A;  2MJ7 A;  3KTU A;  2XHI A;  1W80 A;  1N3A A;  3VN5 A;  1YQR A;  1YQM A;  4EJZ A;  3F10 A;  2I5W A;  4B0A A;  3KRM A;  1D3U A;  2G30 A;  3H1Z A;  3HS8 A;  1UT7 A;  2D0C A;  1M3Q A;  1QNB A;  1QN4 A;  3OST A;  3EIK A;  3ULX A;  1VOK A;  1KO9 A;  2LAE A;  1PZD A;  1TBP A;  3ASM A;  1KYU A;  1FN7 A;  1VOL B;  2NOZ A;  2NOL A;  2MZ8 A;  3RPJ A;  2FGT A;  1UT4 A;  2O3O A;  1C9B B;  1HU0 A;  1RM1 A;  2YH5 A;  1YQL A;  1KYF A;  1QNC A;  5IYD P;  1VTO A;  1QTP A;  1QN6 A;  1NGM A;  2HZM A;  3DPT A;  1CDW A;  2D0B A;  1KY6 A;  4TPS A;  1AIS A;  3SNS A;  1LWV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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