1D3UA

Tata-binding protein/transcription factor (ii)b/bre+tata-box complex from pyrococcus woesei
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
181
structure length
181
Chain Sequence
MVDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA 24-MER: BRE+TATA-BOX
publication title The structural basis for the oriented assembly of a TBP/TFB/promoter complex.
pubmed doi rcsb
source organism Pyrococcus woesei
molecule tags Gene regulation/dna
total genus 42
structure length 181
sequence length 181
ec nomenclature
pdb deposition date 1999-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1d3uA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1d3uA02
4PY5A 1TGHA 1QN6A 2MJ7A 1QTPA 1TBPA 1QN8A 1QTSA 1MP9A 2D0BA 3ASMA 4WZSD 1KY6A 1QN7A 5IYCP 1B9KA 1NGMA 1QN9A 1QNAA 5IYDP 1NH2A 1VOKA 2D0AA 4RODB 4B0AA 4ROEB 2IV9A 1JFIC 1KY7A 3HS8A 1AISA 1CDWA 1D3UA 1NVPA 4ROCB 1VOLB 2Z8UA 1E42A 1KYUA 1RM1A 1R4XA 2IV8A 3OC3C 3H1ZA 2D0CA 1QNCA 1TBAB 3HS9A 1QNBA 1VTOA 1QN4A 3EIKA 1KYDA 1VTLE 1QN5A 1QNEA 2G30A 3VN5A 1KYFA 2VJ0A 3OCIA 1W80A 1C9BB 1QN3A 1YTFA 1PCZA 1YTBA 1PZDA 5IYBP
chains in the Genus database with same CATH superfamily
4TPSA 5JN5A 1KFQA 2PWWA 1WJWA 1MP9A 2D0BA 3ASMA 2NOIA 1KY6A 2DKDA 2Z0FA 5IYCP 2NOLA 1NGMA 1QN9A 3OSTA 5JMVD 1NH2A 1VOKA 2V9JA 4BJUA 3HS8A 1PCJX 1P5DX 4Q11A 1LWYA 4ROCB 2Z8UA 1EBMA 2EHBD 4I8OA 2NOBA 4QG5A 4D7QA 2IV8A 2OOXA 3CWUA 4WX8A 2V8QA 1LXTA 1J3MA 2O3OA 1UT7A 3F10A 2NOFA 3T4NA 1QNEA 2G30A 1MPGA 3I0WA 1P5GX 3TDHA 3BKQX 1KYFA 2QREA 3D7QA 5EPCA 3ULXA 1C9BB 1W80A 1PCMX 1PZDA 4PY5A 2MJ7A 2QLVA 2Y8LA 4EAIA 3PMGA 3KTUA 4WZSD 1T6AA 4EJZA 2HKPA 2NOEA 5KL0A 1CDWA 1M3HA 2IV9A 1AISA 1D3UA 5AN4A 4WXAA 1NVPA 4CFFA 3CVTA 1E42A 3DPUA 1WQAA 2HZSA 1V5SA 3H1ZA 3OSEA 1UT4A 4IL8A 1QNCA 3OH9A 3CWSA 1HU0A 3DPTA 1EUVA 1C47A 1YQRA 2JHJA 1KYDA 1VTLE 3I0XA 5HSHA 1JDYA 2HL9A 2QRDA 2I5WA 1PVSA 3OCIA 4D7RA 3OGDA 1YQMA 2JHNA 1N3CA 4EALA 1PCZA 1FN7A 2YA3A 3RPJA 1YTBA 2NOHA 5IYBP 1TGHA 5BMPA 2FUVA 1QTPA 2DKCA 1QN8A 2MZ8A 3CW7A 5IYDP 1QNAA 3TE5A 1YTFA 2D0AA 2NOZA 1UL7A 2R5XA 2ZFDB 4HJHA 1KY7A 4ROEB 3IH7A 1XSZA 1N39A 2H5AX 3CWTA 4EAKA 1YQLA 2LAEA 1KYUA 1K35A 1KFIA 3ENCA 1R4XA 3OC3C 3F0ZA 3OLPA 3UW2A 2H4LX 1RM1A 1LWVA 3OSMA 2FKFA 4EAGA 3CVSA 2D0CA 2JOIA 3N89A 3C04A 2HZMA 2NVMA 1VTOA 1QN4A 1QN5A 2QR1A 3OH6A 2JPIA 1LWWA 1C4GA 1VKLA 2FKMX 3VN5A 1K2YX 1DIZA 2Y8QA 1QN3A 2OOYA 2QRCA 1N3AA 1QN6A 1TBPA 3SNSA 3D4VA 3RSMA 1QTSA 3CWAA 1QN7A 2F7LA 2V92A 1B9KA 1M3QA 5BMNA 4B0AA 3NA5A 4RODB 1JFIC 4C7PA 2NWVA 3EAYA 4EJYA 1YQKA 1KO9A 2FGTA 2NLVA 2YH5A 1TUOA 1VOLB 4MRQA 2HL8A 3PDKA 4DULA 1TBAB 1Q9UA 3HS9A 3I3WA 1QNBA 3EIKA 3KRMA 4EAJA 2VJ0A 2XHIA 3ENOC 2DKAA 1M5Q1 5F9CA
chains in the Genus database with same CATH topology
4TPSA 1MP9A 2D0BA 3ASMA 2NOIA 1KY6A 2NOLA 5IYCP 1NGMA 1QN9A 3OSTA 1NH2A 1VOKA 3HS8A 4Q11A 1LWYA 4ROCB 2Z8UA 1EBMA 4I8OA 2NOBA 2IV8A 2O3OA 1UT7A 3F10A 2NOFA 1QNEA 2G30A 3I0WA 1KYFA 3ULXA 1C9BB 1W80A 1PZDA 4PY5A 2MJ7A 3KTUA 4WZSD 4EJZA 2NOEA 1CDWA 1M3HA 2IV9A 1AISA 1D3UA 5AN4A 1NVPA 1E42A 3DPUA 2HZSA 3H1ZA 1UT4A 1QNCA 1HU0A 3DPTA 1YQRA 1VTLE 1KYDA 3I0XA 2I5WA 3OCIA 1YQMA 1N3CA 1PCZA 1FN7A 3RPJA 1YTBA 2NOHA 5IYBP 1TGHA 1QTPA 1QN8A 2MZ8A 5IYDP 1QNAA 1YTFA 2D0AA 2NOZA 4ROEB 3IH7A 1KY7A 1N39A 1YQLA 2LAEA 1KYUA 1RM1A 1R4XA 3OC3C 3F0ZA 1LWVA 3OSMA 2D0CA 2JOIA 3N89A 2HZMA 1QN5A 1VTOA 1QN4A 1LWWA 3VN5A 1QN3A 1N3AA 1QN6A 1TBPA 3SNSA 1QTSA 1QN7A 1B9KA 1M3QA 4B0AA 1JFIC 4RODB 4EJYA 1YQKA 1KO9A 2FGTA 2YH5A 1VOLB 4DULA 1TBAB 3HS9A 1QNBA 3EIKA 3KRMA 2VJ0A 2XHIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PY5 A;  1TGH A;  1QN6 A;  2MJ7 A;  1QTP A;  1TBP A;  1QN8 A;  1QTS A;  1MP9 A;  2D0B A;  3ASM A;  4WZS D;  1KY6 A;  1QN7 A;  5IYC P;  1B9K A;  1NGM A;  1QN9 A;  1QNA A;  5IYD P;  1NH2 A;  1VOK A;  2D0A A;  4ROD B;  4B0A A;  4ROE B;  2IV9 A;  1JFI C;  1KY7 A;  3HS8 A;  1AIS A;  1CDW A;  1D3U A;  1NVP A;  4ROC B;  1VOL B;  2Z8U A;  1E42 A;  1KYU A;  1RM1 A;  1R4X A;  2IV8 A;  3OC3 C;  3H1Z A;  2D0C A;  1QNC A;  1TBA B;  3HS9 A;  1QNB A;  1VTO A;  1QN4 A;  3EIK A;  1KYD A;  1VTL E;  1QN5 A;  1QNE A;  2G30 A;  3VN5 A;  1KYF A;  2VJ0 A;  3OCI A;  1W80 A;  1C9B B;  1QN3 A;  1YTF A;  1PCZ A;  1YTB A;  1PZD A;  5IYB P; 
#chains in the Genus database with same CATH topology
 4TPS A;  5JN5 A;  1KFQ A;  2PWW A;  1WJW A;  1MP9 A;  2D0B A;  3ASM A;  2NOI A;  1KY6 A;  2DKD A;  2Z0F A;  5IYC P;  2NOL A;  1NGM A;  1QN9 A;  3OST A;  5JMV D;  1NH2 A;  1VOK A;  2V9J A;  4BJU A;  3HS8 A;  1PCJ X;  1P5D X;  4Q11 A;  1LWY A;  4ROC B;  2Z8U A;  1EBM A;  2EHB D;  4I8O A;  2NOB A;  4QG5 A;  4D7Q A;  2IV8 A;  2OOX A;  3CWU A;  4WX8 A;  2V8Q A;  1LXT A;  1J3M A;  2O3O A;  1UT7 A;  3F10 A;  2NOF A;  3T4N A;  1QNE A;  2G30 A;  1MPG A;  3I0W A;  1P5G X;  3TDH A;  3BKQ X;  1KYF A;  2QRE A;  3D7Q A;  5EPC A;  3ULX A;  1C9B B;  1W80 A;  1PCM X;  1PZD A;  4PY5 A;  2MJ7 A;  2QLV A;  2Y8L A;  4EAI A;  3PMG A;  3KTU A;  4WZS D;  1T6A A;  4EJZ A;  2HKP A;  2NOE A;  5KL0 A;  1CDW A;  1M3H A;  2IV9 A;  1AIS A;  1D3U A;  5AN4 A;  4WXA A;  1NVP A;  4CFF A;  3CVT A;  1E42 A;  3DPU A;  1WQA A;  2HZS A;  1V5S A;  3H1Z A;  3OSE A;  1UT4 A;  4IL8 A;  1QNC A;  3OH9 A;  3CWS A;  1HU0 A;  3DPT A;  1EUV A;  1C47 A;  1YQR A;  2JHJ A;  1KYD A;  1VTL E;  3I0X A;  5HSH A;  1JDY A;  2HL9 A;  2QRD A;  2I5W A;  1PVS A;  3OCI A;  4D7R A;  3OGD A;  1YQM A;  2JHN A;  1N3C A;  4EAL A;  1PCZ A;  1FN7 A;  2YA3 A;  3RPJ A;  1YTB A;  2NOH A;  5IYB P;  1TGH A;  5BMP A;  2FUV A;  1QTP A;  2DKC A;  1QN8 A;  2MZ8 A;  3CW7 A;  5IYD P;  1QNA A;  3TE5 A;  1YTF A;  2D0A A;  2NOZ A;  1UL7 A;  2R5X A;  2ZFD B;  4HJH A;  1KY7 A;  4ROE B;  3IH7 A;  1XSZ A;  1N39 A;  2H5A X;  3CWT A;  4EAK A;  1YQL A;  2LAE A;  1KYU A;  1K35 A;  1KFI A;  3ENC A;  1R4X A;  3OC3 C;  3F0Z A;  3OLP A;  3UW2 A;  2H4L X;  1RM1 A;  1LWV A;  3OSM A;  2FKF A;  4EAG A;  3CVS A;  2D0C A;  2JOI A;  3N89 A;  3C04 A;  2HZM A;  2NVM A;  1VTO A;  1QN4 A;  1QN5 A;  2QR1 A;  3OH6 A;  2JPI A;  1LWW A;  1C4G A;  1VKL A;  2FKM X;  3VN5 A;  1K2Y X;  1DIZ A;  2Y8Q A;  1QN3 A;  2OOY A;  2QRC A;  1N3A A;  1QN6 A;  1TBP A;  3SNS A;  3D4V A;  3RSM A;  1QTS A;  3CWA A;  1QN7 A;  2F7L A;  2V92 A;  1B9K A;  1M3Q A;  5BMN A;  4B0A A;  3NA5 A;  4ROD B;  1JFI C;  4C7P A;  2NWV A;  3EAY A;  4EJY A;  1YQK A;  1KO9 A;  2FGT A;  2NLV A;  2YH5 A;  1TUO A;  1VOL B;  4MRQ A;  2HL8 A;  3PDK A;  4DUL A;  1TBA B;  1Q9U A;  3HS9 A;  3I3W A;  1QNB A;  3EIK A;  3KRM A;  4EAJ A;  2VJ0 A;  2XHI A;  3ENO C;  2DKA A;  1M5Q 1;  5F9C A; 
#chains in the Genus database with same CATH homology
 4TPS A;  1MP9 A;  2D0B A;  3ASM A;  2NOI A;  1KY6 A;  2NOL A;  5IYC P;  1NGM A;  1QN9 A;  3OST A;  1NH2 A;  1VOK A;  3HS8 A;  4Q11 A;  1LWY A;  4ROC B;  2Z8U A;  1EBM A;  4I8O A;  2NOB A;  2IV8 A;  2O3O A;  1UT7 A;  3F10 A;  2NOF A;  1QNE A;  2G30 A;  3I0W A;  1KYF A;  3ULX A;  1C9B B;  1W80 A;  1PZD A;  4PY5 A;  2MJ7 A;  3KTU A;  4WZS D;  4EJZ A;  2NOE A;  1CDW A;  1M3H A;  2IV9 A;  1AIS A;  1D3U A;  5AN4 A;  1NVP A;  1E42 A;  3DPU A;  2HZS A;  3H1Z A;  1UT4 A;  1QNC A;  1HU0 A;  3DPT A;  1YQR A;  1VTL E;  1KYD A;  3I0X A;  2I5W A;  3OCI A;  1YQM A;  1N3C A;  1PCZ A;  1FN7 A;  3RPJ A;  1YTB A;  2NOH A;  5IYB P;  1TGH A;  1QTP A;  1QN8 A;  2MZ8 A;  5IYD P;  1QNA A;  1YTF A;  2D0A A;  2NOZ A;  4ROE B;  3IH7 A;  1KY7 A;  1N39 A;  1YQL A;  2LAE A;  1KYU A;  1RM1 A;  1R4X A;  3OC3 C;  3F0Z A;  1LWV A;  3OSM A;  2D0C A;  2JOI A;  3N89 A;  2HZM A;  1QN5 A;  1VTO A;  1QN4 A;  1LWW A;  3VN5 A;  1QN3 A;  1N3A A;  1QN6 A;  1TBP A;  3SNS A;  1QTS A;  1QN7 A;  1B9K A;  1M3Q A;  4B0A A;  1JFI C;  4ROD B;  4EJY A;  1YQK A;  1KO9 A;  2FGT A;  2YH5 A;  1VOL B;  4DUL A;  1TBA B;  3HS9 A;  1QNB A;  3EIK A;  3KRM A;  2VJ0 A;  2XHI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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