1D3UA

Tata-binding protein/transcription factor (ii)b/bre+tata-box complex from pyrococcus woesei
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
181
structure length
181
Chain Sequence
MVDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation/dna
molecule keywords DNA 24-MER: BRE+TATA-BOX
publication title The structural basis for the oriented assembly of a TBP/TFB/promoter complex.
pubmed doi rcsb
source organism Pyrococcus woesei
total genus 42
structure length 181
sequence length 181
ec nomenclature
pdb deposition date 1999-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1d3uA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1d3uA02
2D0AA 1PZDA 3EIKA 1KYUA 1E42A 1NGMA 1QN4A 1QN7A 1KYFA 1VTLE 1NH2A 1YTBA 2D0BA 4ROEB 3VN5A 1RM1A 1CDWA 1KY7A 1W80A 1QNAA 1TGHA 1PCZA 1QNEA 1QTPA 4ROCB 1D3UA 4PY5A 4B0AA 1QN3A 3HS9A 5IYCP 1NVPA 1QNBA 2IV8A 3H1ZA 1VTOA 4WZSD 1TBAB 3OCIA 1KYDA 2Z8UA 4RODB 3HS8A 1KY6A 1VOKA 1QN6A 1TBPA 1B9KA 3ASMA 3OC3C 1AISA 2IV9A 2D0CA 2MJ7A 1QN9A 1QNCA 5IYBP 2VJ0A 1JFIC 1QN5A 1R4XA 1C9BB 1YTFA 1QTSA 1VOLB 1QN8A 2G30A 1MP9A 5IYDP
chains in the Genus database with same CATH superfamily
3CVSA 2D0AA 2QRDA 3TE5A 3TDHA 4WX8A 1P5GX 1TUOA 2NOZA 1CDWA 1TGHA 1QNAA 4EAKA 2HL9A 4ROCB 4TPSA 4PY5A 2YA3A 1QN3A 3C04A 1PCMX 2OOYA 2V8QA 1QNBA 4EJYA 3H1ZA 1VTOA 2HZMA 4WZSD 2ZFDB 2FUVA 3CWTA 3CWSA 1JDYA 1KYDA 2Z8UA 3HS8A 1N3CA 1C4GA 2DKDA 5JMVD 1PCJX 3OH9A 5JN5A 2FKFA 1R4XA 2YH5A 3RPJA 1M3QA 2FKMX 2V9JA 5AN4A 1VOLB 4EAGA 3OH6A 4EAJA 1K2YX 1UL7A 3RSMA 1NGMA 3UW2A 1KYFA 4I8OA 1MPGA 5BMPA 1VKLA 2QLVA 1RM1A 1T6AA 1PCZA 4WXAA 3N89A 2HKPA 3SNSA 3HS9A 1NVPA 1FN7A 2I5WA 5EPCA 3F10A 1WJWA 1KFQA 3ENOC 5KL0A 4CFFA 5HSHA 3D4VA 3F0ZA 4BJUA 3CWUA 2JOIA 2NWVA 2NOBA 2JPIA 3DPUA 1TBPA 2QREA 3ASMA 2HL8A 4EAIA 4EALA 2PWWA 3PMGA 1QN9A 1YQLA 1V5SA 4Q11A 1C9BB 2NOIA 2R5XA 2G30A 1M3HA 2JHNA 1YQRA 1PZDA 2QR1A 1QN7A 2V92A 3NA5A 1P5DX 3T4NA 3IH7A 1NH2A 1YTBA 4ROEB 3OGDA 3VN5A 1LWYA 2JHJA 4EJZA 1K35A 1D3UA 2EHBD 4B0AA 3KRMA 1DIZA 3DPTA 5IYCP 1LXTA 4D7RA 3KTUA 1YQKA 1LWVA 2FGTA 1EBMA 2HZSA 1YQMA 3CW7A 3OCIA 3I0WA 2LAEA 4C7PA 1J3MA 2XHIA 1KY6A 4IL8A 1QN6A 1B9KA 1Q9UA 2H5AX 2O3OA 3OC3C 2IV9A 2NVMA 3OSMA 3I0XA 2VJ0A 1JFIC 1QN5A 5F9CA 1YTFA 1N3AA 2Z0FA 4QG5A 1MP9A 1KO9A 1WQAA 1M5Q1 5BMNA 2Y8QA 3EIKA 1QN4A 1KYUA 1E42A 2OOXA 1KFIA 2MZ8A 3PDKA 1VTLE 2D0BA 3ENCA 3ULXA 3BKQX 2H4LX 4DULA 1KY7A 1W80A 2Y8LA 2NOEA 2NOHA 1QTPA 3CWAA 2NOFA 1EUVA 1N39A 2QRCA 3OSEA 1XSZA 3CVTA 1C47A 2F7LA 2IV8A 3OSTA 3OLPA 1TBAB 1PVSA 1UT7A 4MRQA 4HJHA 4RODB 3D7QA 1VOKA 1AISA 2D0CA 2MJ7A 1HU0A 1QNCA 5IYBP 3EAYA 4D7QA 1QTSA 1UT4A 2DKCA 3I3WA 5IYDP 1QN8A 2DKAA 2NLVA 1QNEA 1LWWA 2NOLA
chains in the Genus database with same CATH topology
2D0AA 2NOZA 1CDWA 1TGHA 1QNAA 4ROCB 4TPSA 4PY5A 1QN3A 1QNBA 4EJYA 3H1ZA 1VTOA 2HZMA 4WZSD 1KYDA 2Z8UA 3HS8A 1N3CA 1R4XA 2YH5A 3RPJA 1M3QA 5AN4A 1VOLB 1NGMA 1KYFA 4I8OA 1RM1A 1PCZA 3N89A 3SNSA 3HS9A 1NVPA 1FN7A 2I5WA 3F10A 3F0ZA 2JOIA 2NOBA 3DPUA 1TBPA 3ASMA 1QN9A 1YQLA 4Q11A 1C9BB 2NOIA 2G30A 1M3HA 1YQRA 1PZDA 1QN7A 1YTBA 3IH7A 1NH2A 4ROEB 3VN5A 1LWYA 4EJZA 1D3UA 4B0AA 3KRMA 3DPTA 5IYCP 3KTUA 1YQKA 1LWVA 1EBMA 2FGTA 2HZSA 1YQMA 3OCIA 3I0WA 2LAEA 2XHIA 1KY6A 1QN6A 1B9KA 2O3OA 3OC3C 2IV9A 3I0XA 3OSMA 2VJ0A 1JFIC 1QN5A 1YTFA 1N3AA 1KO9A 1MP9A 3EIKA 1QN4A 1KYUA 1E42A 2MZ8A 1VTLE 2D0BA 3ULXA 4DULA 1KY7A 1W80A 2NOEA 2NOHA 1QTPA 2NOFA 1N39A 2IV8A 3OSTA 1TBAB 1UT7A 4RODB 1VOKA 1AISA 2D0CA 2MJ7A 1HU0A 1QNCA 5IYBP 1QTSA 1UT4A 5IYDP 1QN8A 1QNEA 1LWWA 2NOLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D0A A;  1PZD A;  3EIK A;  1KYU A;  1E42 A;  1NGM A;  1QN4 A;  1QN7 A;  1KYF A;  1VTL E;  1NH2 A;  1YTB A;  2D0B A;  4ROE B;  3VN5 A;  1RM1 A;  1CDW A;  1KY7 A;  1W80 A;  1QNA A;  1TGH A;  1PCZ A;  1QNE A;  1QTP A;  4ROC B;  1D3U A;  4PY5 A;  4B0A A;  1QN3 A;  3HS9 A;  5IYC P;  1NVP A;  1QNB A;  2IV8 A;  3H1Z A;  1VTO A;  4WZS D;  1TBA B;  3OCI A;  1KYD A;  2Z8U A;  4ROD B;  3HS8 A;  1KY6 A;  1VOK A;  1QN6 A;  1TBP A;  1B9K A;  3ASM A;  3OC3 C;  1AIS A;  2IV9 A;  2D0C A;  2MJ7 A;  1QN9 A;  1QNC A;  5IYB P;  2VJ0 A;  1JFI C;  1QN5 A;  1R4X A;  1C9B B;  1YTF A;  1QTS A;  1VOL B;  1QN8 A;  2G30 A;  1MP9 A;  5IYD P; 
#chains in the Genus database with same CATH topology
 3CVS A;  2D0A A;  2QRD A;  3TE5 A;  3TDH A;  4WX8 A;  1P5G X;  1TUO A;  2NOZ A;  1CDW A;  1TGH A;  1QNA A;  4EAK A;  2HL9 A;  4ROC B;  4TPS A;  4PY5 A;  2YA3 A;  1QN3 A;  3C04 A;  1PCM X;  2OOY A;  2V8Q A;  1QNB A;  4EJY A;  3H1Z A;  1VTO A;  2HZM A;  4WZS D;  2ZFD B;  2FUV A;  3CWT A;  3CWS A;  1JDY A;  1KYD A;  2Z8U A;  3HS8 A;  1N3C A;  1C4G A;  2DKD A;  5JMV D;  1PCJ X;  3OH9 A;  5JN5 A;  2FKF A;  1R4X A;  2YH5 A;  3RPJ A;  1M3Q A;  2FKM X;  2V9J A;  5AN4 A;  1VOL B;  4EAG A;  3OH6 A;  4EAJ A;  1K2Y X;  1UL7 A;  3RSM A;  1NGM A;  3UW2 A;  1KYF A;  4I8O A;  1MPG A;  5BMP A;  1VKL A;  2QLV A;  1RM1 A;  1T6A A;  1PCZ A;  4WXA A;  3N89 A;  2HKP A;  3SNS A;  3HS9 A;  1NVP A;  1FN7 A;  2I5W A;  5EPC A;  3F10 A;  1WJW A;  1KFQ A;  3ENO C;  5KL0 A;  4CFF A;  5HSH A;  3D4V A;  3F0Z A;  4BJU A;  3CWU A;  2JOI A;  2NWV A;  2NOB A;  2JPI A;  3DPU A;  1TBP A;  2QRE A;  3ASM A;  2HL8 A;  4EAI A;  4EAL A;  2PWW A;  3PMG A;  1QN9 A;  1YQL A;  1V5S A;  4Q11 A;  1C9B B;  2NOI A;  2R5X A;  2G30 A;  1M3H A;  2JHN A;  1YQR A;  1PZD A;  2QR1 A;  1QN7 A;  2V92 A;  3NA5 A;  1P5D X;  3T4N A;  3IH7 A;  1NH2 A;  1YTB A;  4ROE B;  3OGD A;  3VN5 A;  1LWY A;  2JHJ A;  4EJZ A;  1K35 A;  1D3U A;  2EHB D;  4B0A A;  3KRM A;  1DIZ A;  3DPT A;  5IYC P;  1LXT A;  4D7R A;  3KTU A;  1YQK A;  1LWV A;  2FGT A;  1EBM A;  2HZS A;  1YQM A;  3CW7 A;  3OCI A;  3I0W A;  2LAE A;  4C7P A;  1J3M A;  2XHI A;  1KY6 A;  4IL8 A;  1QN6 A;  1B9K A;  1Q9U A;  2H5A X;  2O3O A;  3OC3 C;  2IV9 A;  2NVM A;  3OSM A;  3I0X A;  2VJ0 A;  1JFI C;  1QN5 A;  5F9C A;  1YTF A;  1N3A A;  2Z0F A;  4QG5 A;  1MP9 A;  1KO9 A;  1WQA A;  1M5Q 1;  5BMN A;  2Y8Q A;  3EIK A;  1QN4 A;  1KYU A;  1E42 A;  2OOX A;  1KFI A;  2MZ8 A;  3PDK A;  1VTL E;  2D0B A;  3ENC A;  3ULX A;  3BKQ X;  2H4L X;  4DUL A;  1KY7 A;  1W80 A;  2Y8L A;  2NOE A;  2NOH A;  1QTP A;  3CWA A;  2NOF A;  1EUV A;  1N39 A;  2QRC A;  3OSE A;  1XSZ A;  3CVT A;  1C47 A;  2F7L A;  2IV8 A;  3OST A;  3OLP A;  1TBA B;  1PVS A;  1UT7 A;  4MRQ A;  4HJH A;  4ROD B;  3D7Q A;  1VOK A;  1AIS A;  2D0C A;  2MJ7 A;  1HU0 A;  1QNC A;  5IYB P;  3EAY A;  4D7Q A;  1QTS A;  1UT4 A;  2DKC A;  3I3W A;  5IYD P;  1QN8 A;  2DKA A;  2NLV A;  1QNE A;  1LWW A;  2NOL A; 
#chains in the Genus database with same CATH homology
 2D0A A;  2NOZ A;  1CDW A;  1TGH A;  1QNA A;  4ROC B;  4TPS A;  4PY5 A;  1QN3 A;  1QNB A;  4EJY A;  3H1Z A;  1VTO A;  2HZM A;  4WZS D;  1KYD A;  2Z8U A;  3HS8 A;  1N3C A;  1R4X A;  2YH5 A;  3RPJ A;  1M3Q A;  5AN4 A;  1VOL B;  1NGM A;  1KYF A;  4I8O A;  1RM1 A;  1PCZ A;  3N89 A;  3SNS A;  3HS9 A;  1NVP A;  1FN7 A;  2I5W A;  3F10 A;  3F0Z A;  2JOI A;  2NOB A;  3DPU A;  1TBP A;  3ASM A;  1QN9 A;  1YQL A;  4Q11 A;  1C9B B;  2NOI A;  2G30 A;  1M3H A;  1YQR A;  1PZD A;  1QN7 A;  1YTB A;  3IH7 A;  1NH2 A;  4ROE B;  3VN5 A;  1LWY A;  4EJZ A;  1D3U A;  4B0A A;  3KRM A;  3DPT A;  5IYC P;  3KTU A;  1YQK A;  1LWV A;  1EBM A;  2FGT A;  2HZS A;  1YQM A;  3OCI A;  3I0W A;  2LAE A;  2XHI A;  1KY6 A;  1QN6 A;  1B9K A;  2O3O A;  3OC3 C;  2IV9 A;  3I0X A;  3OSM A;  2VJ0 A;  1JFI C;  1QN5 A;  1YTF A;  1N3A A;  1KO9 A;  1MP9 A;  3EIK A;  1QN4 A;  1KYU A;  1E42 A;  2MZ8 A;  1VTL E;  2D0B A;  3ULX A;  4DUL A;  1KY7 A;  1W80 A;  2NOE A;  2NOH A;  1QTP A;  2NOF A;  1N39 A;  2IV8 A;  3OST A;  1TBA B;  1UT7 A;  4ROD B;  1VOK A;  1AIS A;  2D0C A;  2MJ7 A;  1HU0 A;  1QNC A;  5IYB P;  1QTS A;  1UT4 A;  5IYD P;  1QN8 A;  1QNE A;  1LWW A;  2NOL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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