2V8QA

Crystal structure of the regulatory fragment of mammalian ampk in complexes with amp
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
156
structure length
102
Chain Sequence
SMAWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRTYLLDFRSIDDEVAPRPGSHTIEFFEMCANLIKILAQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Rattus norvegicus
publication title Structural Basis for AMP Binding to Mammalian AMP-Activated Protein Kinase
pubmed doi rcsb
molecule keywords 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1
total genus 23
structure length 102
sequence length 156
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2007-08-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.80 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Kinase associated domain 1, KA1 2v8qA01
2QRCA 2OOYA 2Y8QA 2V9JA 2QRDA 2ZFDB 4CFFA 2QLVA 3TDHA 4EALA 1UL7A 2OOXA 2QREA 4EAIA 2QR1A 2EHBD 2Y8LA 3OSEA 4EAKA 4EAGA 2V92A 4EAJA 1V5SA 2YA3A 3TE5A 2V8QA 3T4NA
chains in the Genus database with same CATH superfamily
2QRCA 4D7QA 1VTOA 1B9KA 5AN4A 2XHIA 1YTBA 1KYDA 5JN5A 1TUOA 2ZFDB 3UW2A 1QNEA 2Z0FA 1KO9A 1C4GA 2H5AX 1VOKA 5IYDP 1PCJX 2NWVA 4EJYA 4D7RA 1UL7A 2DKDA 4MRQA 1TBAB 4B0AA 2FGTA 4RODB 2JOIA 3PMGA 1EUVA 1K2YX 4I8OA 1NVPA 3F0ZA 1YQKA 2O3OA 3EIKA 2DKAA 5KL0A 3CVSA 3IH7A 2HZMA 3I3WA 1VKLA 2NOZA 1UT7A 2NOLA 1JDYA 4EAJA 2YH5A 3OLPA 1D3UA 3ENCA 2YA3A 1Q9UA 3CWSA 2JHNA 3CW7A 3H1ZA 2D0CA 3C04A 1UT4A 1WJWA 3T4NA 3OGDA 1C47A 1K35A 4WXAA 2OOYA 5IYBP 1YQMA 1YQRA 1PCMX 4WX8A 2HZSA 2JHJA 2QRDA 1KY6A 1TBPA 1QNBA 1LXTA 1QNCA 1NGMA 2PWWA 3TDHA 4EALA 5BMPA 3PDKA 3VN5A 1N3AA 1N3CA 2JPIA 3CWTA 2QREA 1LWWA 1M3QA 1KFQA 3N89A 1TGHA 2G30A 3I0XA 3OC3C 3NA5A 3DPTA 3KTUA 2NLVA 2V92A 4QG5A 1EBMA 3BKQX 5JMVD 2LAEA 5IYCP 2R5XA 1T6AA 3I0WA 3OSTA 1KYUA 2FKMX 3TE5A 1QN5A 2V8QA 1HU0A 1XSZA 1QTPA 1LWVA 4BJUA 1YTFA 2NOEA 2V9JA 1LWYA 3D7QA 2NOFA 1MPGA 1FN7A 1YQLA 1P5DX 1MP9A 1J3MA 1N39A 1CDWA 2QLVA 1QN8A 2VJ0A 4Q11A 1PZDA 1P5GX 1KFIA 1NH2A 1W80A 2HL8A 4TPSA 1WQAA 2NOBA 4HJHA 1E42A 2HL9A 4IL8A 1QTSA 2EHBD 2Y8LA 3OSEA 1QN9A 3ULXA 4EAKA 3RSMA 4EAGA 3EAYA 2FKFA 2NOHA 2HKPA 1R4XA 3D4VA 1QN4A 3KRMA 2I5WA 2NVMA 3OH6A 2FUVA 1QN7A 2DKCA 1RM1A 2Y8QA 1VOLB 3ENOC 3F10A 4ROEB 2Z8UA 5EPCA 3OSMA 4CFFA 1PCZA 3HS9A 3RPJA 3DPUA 2F7LA 2D0AA 2MZ8A 2OOXA 3HS8A 2IV9A 2NOIA 2MJ7A 4EAIA 2QR1A 4DULA 3OCIA 3SNSA 5HSHA 4WZSD 1M3HA 5BMNA 3CVTA 4PY5A 1M5Q1 1KYFA 3CWUA 1AISA 1QNAA 4ROCB 3CWAA 2H4LX 3OH9A 1QN3A 2D0BA 1DIZA 1V5SA 3ASMA 1JFIC 1QN6A 2IV8A 1VTLE 1C9BB 4EJZA 5F9CA 1PVSA 4C7PA 1KY7A
chains in the Genus database with same CATH topology
2QRCA 2OOYA 2Y8QA 2V9JA 2QRDA 2ZFDB 4CFFA 2QLVA 3TDHA 4EALA 1UL7A 2OOXA 2QREA 4EAIA 2QR1A 2EHBD 2Y8LA 3OSEA 4EAKA 4EAGA 2V92A 4EAJA 1V5SA 2YA3A 3TE5A 2V8QA 3T4NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QRC A;  2OOY A;  2Y8Q A;  2V9J A;  2QRD A;  2ZFD B;  4CFF A;  2QLV A;  3TDH A;  4EAL A;  1UL7 A;  2OOX A;  2QRE A;  4EAI A;  2QR1 A;  2EHB D;  2Y8L A;  3OSE A;  4EAK A;  4EAG A;  2V92 A;  4EAJ A;  1V5S A;  2YA3 A;  3TE5 A;  2V8Q A;  3T4N A; 
#chains in the Genus database with same CATH topology
 2QRC A;  4D7Q A;  1VTO A;  1B9K A;  5AN4 A;  2XHI A;  1YTB A;  1KYD A;  5JN5 A;  1TUO A;  2ZFD B;  3UW2 A;  1QNE A;  2Z0F A;  1KO9 A;  1C4G A;  2H5A X;  1VOK A;  5IYD P;  1PCJ X;  2NWV A;  4EJY A;  4D7R A;  1UL7 A;  2DKD A;  4MRQ A;  1TBA B;  4B0A A;  2FGT A;  4ROD B;  2JOI A;  3PMG A;  1EUV A;  1K2Y X;  4I8O A;  1NVP A;  3F0Z A;  1YQK A;  2O3O A;  3EIK A;  2DKA A;  5KL0 A;  3CVS A;  3IH7 A;  2HZM A;  3I3W A;  1VKL A;  2NOZ A;  1UT7 A;  2NOL A;  1JDY A;  4EAJ A;  2YH5 A;  3OLP A;  1D3U A;  3ENC A;  2YA3 A;  1Q9U A;  3CWS A;  2JHN A;  3CW7 A;  3H1Z A;  2D0C A;  3C04 A;  1UT4 A;  1WJW A;  3T4N A;  3OGD A;  1C47 A;  1K35 A;  4WXA A;  2OOY A;  5IYB P;  1YQM A;  1YQR A;  1PCM X;  4WX8 A;  2HZS A;  2JHJ A;  2QRD A;  1KY6 A;  1TBP A;  1QNB A;  1LXT A;  1QNC A;  1NGM A;  2PWW A;  3TDH A;  4EAL A;  5BMP A;  3PDK A;  3VN5 A;  1N3A A;  1N3C A;  2JPI A;  3CWT A;  2QRE A;  1LWW A;  1M3Q A;  1KFQ A;  3N89 A;  1TGH A;  2G30 A;  3I0X A;  3OC3 C;  3NA5 A;  3DPT A;  3KTU A;  2NLV A;  2V92 A;  4QG5 A;  1EBM A;  3BKQ X;  5JMV D;  2LAE A;  5IYC P;  2R5X A;  1T6A A;  3I0W A;  3OST A;  1KYU A;  2FKM X;  3TE5 A;  1QN5 A;  2V8Q A;  1HU0 A;  1XSZ A;  1QTP A;  1LWV A;  4BJU A;  1YTF A;  2NOE A;  2V9J A;  1LWY A;  3D7Q A;  2NOF A;  1MPG A;  1FN7 A;  1YQL A;  1P5D X;  1MP9 A;  1J3M A;  1N39 A;  1CDW A;  2QLV A;  1QN8 A;  2VJ0 A;  4Q11 A;  1PZD A;  1P5G X;  1KFI A;  1NH2 A;  1W80 A;  2HL8 A;  4TPS A;  1WQA A;  2NOB A;  4HJH A;  1E42 A;  2HL9 A;  4IL8 A;  1QTS A;  2EHB D;  2Y8L A;  3OSE A;  1QN9 A;  3ULX A;  4EAK A;  3RSM A;  4EAG A;  3EAY A;  2FKF A;  2NOH A;  2HKP A;  1R4X A;  3D4V A;  1QN4 A;  3KRM A;  2I5W A;  2NVM A;  3OH6 A;  2FUV A;  1QN7 A;  2DKC A;  1RM1 A;  2Y8Q A;  1VOL B;  3ENO C;  3F10 A;  4ROE B;  2Z8U A;  5EPC A;  3OSM A;  4CFF A;  1PCZ A;  3HS9 A;  3RPJ A;  3DPU A;  2F7L A;  2D0A A;  2MZ8 A;  2OOX A;  3HS8 A;  2IV9 A;  2NOI A;  2MJ7 A;  4EAI A;  2QR1 A;  4DUL A;  3OCI A;  3SNS A;  5HSH A;  4WZS D;  1M3H A;  5BMN A;  3CVT A;  4PY5 A;  1M5Q 1;  1KYF A;  3CWU A;  1AIS A;  1QNA A;  4ROC B;  3CWA A;  2H4L X;  3OH9 A;  1QN3 A;  2D0B A;  1DIZ A;  1V5S A;  3ASM A;  1JFI C;  1QN6 A;  2IV8 A;  1VTL E;  1C9B B;  4EJZ A;  5F9C A;  1PVS A;  4C7P A;  1KY7 A; 
#chains in the Genus database with same CATH homology
 2QRC A;  2OOY A;  2Y8Q A;  2V9J A;  2QRD A;  2ZFD B;  4CFF A;  2QLV A;  3TDH A;  4EAL A;  1UL7 A;  2OOX A;  2QRE A;  4EAI A;  2QR1 A;  2EHB D;  2Y8L A;  3OSE A;  4EAK A;  4EAG A;  2V92 A;  4EAJ A;  1V5S A;  2YA3 A;  3TE5 A;  2V8Q A;  3T4N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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