2V8QA

Crystal structure of the regulatory fragment of mammalian ampk in complexes with amp
Total Genus 23
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
156
structure length
102
Chain Sequence
SMAWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDSRTYLLDFRSIDDEVAPRPGSHTIEFFEMCANLIKILAQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1
publication title Structural Basis for AMP Binding to Mammalian AMP-Activated Protein Kinase
pubmed doi rcsb
source organism Rattus norvegicus
molecule tags Transferase
total genus 23
structure length 102
sequence length 156
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2007-08-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.80 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Kinase associated domain 1, KA1 2v8qA01
1V5SA 2QRCA 2OOXA 2QR1A 3TE5A 4EALA 4EAGA 2V92A 2QRDA 2YA3A 2QREA 3T4NA 2Y8QA 4CFFA 2V8QA 4EAIA 1UL7A 2OOYA 2EHBD 2ZFDB 3TDHA 4EAJA 3OSEA 4EAKA 2Y8LA 2QLVA 2V9JA
chains in the Genus database with same CATH superfamily
1V5SA 2NOHA 4IL8A 1KYDA 1YQRA 1N3AA 5IYDP 3CVTA 2PWWA 4EAGA 1B9KA 1T6AA 3UW2A 3EAYA 1J3MA 1YQKA 3IH7A 3ASMA 1PCJX 3BKQX 3OSTA 3F10A 2MJ7A 2H4LX 5HSHA 3EIKA 2HZMA 3T4NA 3D4VA 2Z0FA 1VKLA 2F7LA 2Y8QA 3CWTA 1YQMA 1WQAA 4WXAA 3RSMA 3HS9A 1KFIA 4Q11A 4DULA 1C47A 1YTFA 3I3WA 3CWSA 5IYBP 4ROCB 5BMPA 3PDKA 1D3UA 2NOFA 2LAEA 1KYUA 3DPUA 2QRDA 5F9CA 1Q9UA 3CWAA 2JHNA 2NVMA 3F0ZA 2DKCA 2NOZA 5EPCA 4EJYA 2VJ0A 3KRMA 4PY5A 5KL0A 3CW7A 2FGTA 1NH2A 1K2YX 1HU0A 3D7QA 1N3CA 3OC3C 3OSMA 3RPJA 2QREA 1QNEA 1KYFA 5AN4A 4D7RA 3OH6A 1MP9A 2D0AA 2V8QA 3HS8A 4ROEB 2IV9A 4EAIA 1AISA 1QNAA 3H1ZA 1YQLA 1UL7A 2G30A 1FN7A 2FKMX 1R4XA 2HZSA 3CWUA 1QN6A 3OCIA 4BJUA 1PZDA 4D7QA 1K35A 2D0CA 3I0WA 1E42A 1C4GA 2HL9A 1P5GX 2NOEA 1UT4A 1TBPA 1EUVA 3OSEA 4EAKA 1CDWA 1TGHA 5IYCP 1QTPA 1TUOA 4TPSA 3C04A 1PCZA 1C9BB 4B0AA 2OOXA 2JPIA 4RODB 2QR1A 4WZSD 2JOIA 3OLPA 2JHJA 2XHIA 1RM1A 1QN4A 2NOLA 2FUVA 2H5AX 1LWWA 1PVSA 1M3QA 1W80A 1VOLB 2NWVA 1QN9A 3N89A 1PCMX 3DPTA 4C7PA 1KY6A 4I8OA 4QG5A 4HJHA 1LWYA 4EJZA 1P5DX 1UT7A 2D0BA 2IV8A 1VTOA 2Z8UA 1QNBA 1NGMA 2DKAA 3ENOC 2EHBD 3VN5A 2ZFDB 3TDHA 1NVPA 1TBAB 2HL8A 3KTUA 1QN3A 2R5XA 2Y8LA 1QNCA 1YTBA 2QLVA 2I5WA 3CVSA 1JFIC 3SNSA 2NOIA 2MZ8A 2QRCA 1MPGA 3PMGA 3TE5A 4EALA 1N39A 1QTSA 2V92A 4WX8A 1KY7A 1LWVA 1QN8A 2FKFA 5JMVD 1XSZA 2DKDA 2YA3A 1QN7A 4CFFA 1LXTA 1VTLE 3OGDA 1QN5A 2O3OA 2NLVA 1M5Q1 2YH5A 2OOYA 1KO9A 2HKPA 5JN5A 1KFQA 3ULXA 3NA5A 5BMNA 1VOKA 3ENCA 3OH9A 3I0XA 1WJWA 2NOBA 4EAJA 1EBMA 1JDYA 1M3HA 4MRQA 1DIZA 2V9JA
chains in the Genus database with same CATH topology
1V5SA 2QRCA 2OOXA 2QR1A 3TE5A 4EALA 4EAGA 2V92A 2QRDA 2YA3A 2QREA 3T4NA 2Y8QA 4CFFA 2V8QA 4EAIA 1UL7A 2OOYA 2EHBD 2ZFDB 3TDHA 4EAJA 3OSEA 4EAKA 2Y8LA 2QLVA 2V9JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V5S A;  2QRC A;  2OOX A;  2QR1 A;  3TE5 A;  4EAL A;  4EAG A;  2V92 A;  2QRD A;  2YA3 A;  2QRE A;  3T4N A;  2Y8Q A;  4CFF A;  2V8Q A;  4EAI A;  1UL7 A;  2OOY A;  2EHB D;  2ZFD B;  3TDH A;  4EAJ A;  3OSE A;  4EAK A;  2Y8L A;  2QLV A;  2V9J A; 
#chains in the Genus database with same CATH topology
 1V5S A;  2NOH A;  4IL8 A;  1KYD A;  1YQR A;  1N3A A;  5IYD P;  3CVT A;  2PWW A;  4EAG A;  1B9K A;  1T6A A;  3UW2 A;  3EAY A;  1J3M A;  1YQK A;  3IH7 A;  3ASM A;  1PCJ X;  3BKQ X;  3OST A;  3F10 A;  2MJ7 A;  2H4L X;  5HSH A;  3EIK A;  2HZM A;  3T4N A;  3D4V A;  2Z0F A;  1VKL A;  2F7L A;  2Y8Q A;  3CWT A;  1YQM A;  1WQA A;  4WXA A;  3RSM A;  3HS9 A;  1KFI A;  4Q11 A;  4DUL A;  1C47 A;  1YTF A;  3I3W A;  3CWS A;  5IYB P;  4ROC B;  5BMP A;  3PDK A;  1D3U A;  2NOF A;  2LAE A;  1KYU A;  3DPU A;  2QRD A;  5F9C A;  1Q9U A;  3CWA A;  2JHN A;  2NVM A;  3F0Z A;  2DKC A;  2NOZ A;  5EPC A;  4EJY A;  2VJ0 A;  3KRM A;  4PY5 A;  5KL0 A;  3CW7 A;  2FGT A;  1NH2 A;  1K2Y X;  1HU0 A;  3D7Q A;  1N3C A;  3OC3 C;  3OSM A;  3RPJ A;  2QRE A;  1QNE A;  1KYF A;  5AN4 A;  4D7R A;  3OH6 A;  1MP9 A;  2D0A A;  2V8Q A;  3HS8 A;  4ROE B;  2IV9 A;  4EAI A;  1AIS A;  1QNA A;  3H1Z A;  1YQL A;  1UL7 A;  2G30 A;  1FN7 A;  2FKM X;  1R4X A;  2HZS A;  3CWU A;  1QN6 A;  3OCI A;  4BJU A;  1PZD A;  4D7Q A;  1K35 A;  2D0C A;  3I0W A;  1E42 A;  1C4G A;  2HL9 A;  1P5G X;  2NOE A;  1UT4 A;  1TBP A;  1EUV A;  3OSE A;  4EAK A;  1CDW A;  1TGH A;  5IYC P;  1QTP A;  1TUO A;  4TPS A;  3C04 A;  1PCZ A;  1C9B B;  4B0A A;  2OOX A;  2JPI A;  4ROD B;  2QR1 A;  4WZS D;  2JOI A;  3OLP A;  2JHJ A;  2XHI A;  1RM1 A;  1QN4 A;  2NOL A;  2FUV A;  2H5A X;  1LWW A;  1PVS A;  1M3Q A;  1W80 A;  1VOL B;  2NWV A;  1QN9 A;  3N89 A;  1PCM X;  3DPT A;  4C7P A;  1KY6 A;  4I8O A;  4QG5 A;  4HJH A;  1LWY A;  4EJZ A;  1P5D X;  1UT7 A;  2D0B A;  2IV8 A;  1VTO A;  2Z8U A;  1QNB A;  1NGM A;  2DKA A;  3ENO C;  2EHB D;  3VN5 A;  2ZFD B;  3TDH A;  1NVP A;  1TBA B;  2HL8 A;  3KTU A;  1QN3 A;  2R5X A;  2Y8L A;  1QNC A;  1YTB A;  2QLV A;  2I5W A;  3CVS A;  1JFI C;  3SNS A;  2NOI A;  2MZ8 A;  2QRC A;  1MPG A;  3PMG A;  3TE5 A;  4EAL A;  1N39 A;  1QTS A;  2V92 A;  4WX8 A;  1KY7 A;  1LWV A;  1QN8 A;  2FKF A;  5JMV D;  1XSZ A;  2DKD A;  2YA3 A;  1QN7 A;  4CFF A;  1LXT A;  1VTL E;  3OGD A;  1QN5 A;  2O3O A;  2NLV A;  1M5Q 1;  2YH5 A;  2OOY A;  1KO9 A;  2HKP A;  5JN5 A;  1KFQ A;  3ULX A;  3NA5 A;  5BMN A;  1VOK A;  3ENC A;  3OH9 A;  3I0X A;  1WJW A;  2NOB A;  4EAJ A;  1EBM A;  1JDY A;  1M3H A;  4MRQ A;  1DIZ A;  2V9J A; 
#chains in the Genus database with same CATH homology
 1V5S A;  2QRC A;  2OOX A;  2QR1 A;  3TE5 A;  4EAL A;  4EAG A;  2V92 A;  2QRD A;  2YA3 A;  2QRE A;  3T4N A;  2Y8Q A;  4CFF A;  2V8Q A;  4EAI A;  1UL7 A;  2OOY A;  2EHB D;  2ZFD B;  3TDH A;  4EAJ A;  3OSE A;  4EAK A;  2Y8L A;  2QLV A;  2V9J A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...