3N89A

Kh domains
Total Genus 94
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
366
structure length
337
Chain Sequence
HIHGLPLPSNIPMIEINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCHFTVFMALSKMKMPLHELQAHVRQNPIQNVEMSFVDAPVTTYLRITAREKNQHELIEAAKRLNEILFRPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPGNIYEIKVVGNIDNVLKARRYIMDLLPISMCFNIKNTDMANIHMIIDESGIILKMTPSVYEPADLLSGEVPLNCASLRSKEFNIKKLYTAYQKVLSKKFDFIAPQPNDYDNSIWHHSLPANFLKNFNMP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Defective in germ line development protein 3, isoform a
publication title Four KH domains of the C. elegans Bicaudal-C ortholog GLD-3 form a globular structural platform.
pubmed doi rcsb
source organism Caenorhabditis elegans
total genus 94
structure length 337
sequence length 366
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17905 KH_10 GLD-3 KH domain 5
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.210 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 3n89A02
3.30.310.270 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 3n89A01
3KRMA 3N89A
chains in the Genus database with same CATH superfamily
1JFIC 3PMGA 2IV8A 1VOKA 2D0BA 1QN9A 1NGMA 1R4XA 3SNSA 1QN8A 4EAKA 3ASMA 2NOHA 1EUVA 2NVMA 4QG5A 1FN7A 2NWVA 3F10A 5F9CA 1MP9A 3CVTA 3EIKA 2DKDA 2QLVA 1MPGA 3UW2A 1N39A 2QRDA 1KY6A 2V9JA 1UT4A 3H1ZA 3I3WA 1UT7A 3OC3C 4D7RA 4EAGA 4TPSA 1KFIA 2ZFDB 1J3MA 1C9BB 4HJHA 2Y8QA 3TDHA 4DULA 5BMPA 1HU0A 1KYDA 1UL7A 2FUVA 2OOYA 5BMNA 2YA3A 1V5SA 1Q9UA 1JDYA 1C47A 3CWSA 5IYDP 2JHNA 2NOFA 2FGTA 2OOXA 3RSMA 2HZMA 2NOLA 2LAEA 2QRCA 2MJ7A 4WX8A 2V92A 5JMVD 1M3HA 1LWWA 5IYBP 3EAYA 3BKQX 3ENOC 2Z0FA 3C04A 1QN7A 3CWAA 1YQLA 2FKFA 3CW7A 3N89A 3DPUA 1QN6A 1WJWA 3DPTA 5JN5A 2JHJA 1AISA 2G30A 1N3CA 1YQRA 2R5XA 3I0XA 2NLVA 1K35A 2QR1A 3HS9A 3KRMA 5HSHA 1QNAA 1QNCA 1QNEA 2I5WA 3NA5A 1TBAB 5AN4A 1P5DX 4ROCB 1PCJX 4Q11A 3PDKA 1C4GA 1T6AA 1YTFA 3HS8A 3RPJA 2D0AA 1VKLA 4MRQA 1YQMA 1KYUA 1M5Q1 2QREA 3OSEA 4WXAA 1N3AA 5EPCA 2D0CA 3IH7A 3D4VA 3I0WA 3OH9A 3CWUA 1NH2A 2VJ0A 1QNBA 1M3QA 1VTOA 3CWTA 3OCIA 1B9KA 1DIZA 4I8OA 3VN5A 1PCZA 4B0AA 1QTSA 3KTUA 3OLPA 2O3OA 1KYFA 4EAIA 2XHIA 3ENCA 1YQKA 1XSZA 1QN4A 2HL8A 3OH6A 4EJYA 5IYCP 1LWYA 2F7LA 5KL0A 1TBPA 2IV9A 1RM1A 1NVPA 1VOLB 4EAJA 3D7QA 1K2YX 1PVSA 2HKPA 2JOIA 2NOEA 2HZSA 3OGDA 3OSMA 2MZ8A 4EJZA 4C7PA 2DKAA 4ROEB 4BJUA 3F0ZA 2NOZA 2HL9A 1W80A 2PWWA 1EBMA 2DKCA 4D7QA 1QN3A 4WZSD 2NOIA 1P5GX 1KFQA 2H5AX 4EALA 4IL8A 3TE5A 1QTPA 2V8QA 4CFFA 1CDWA 1PCMX 1PZDA 1E42A 1KO9A 2Y8LA 2NOBA 2YH5A 1VTLE 1QN5A 1D3UA 3ULXA 2EHBD 1TUOA 4RODB 3OSTA 2Z8UA 3T4NA 1YTBA 1LWVA 1TGHA 4PY5A 2JPIA 1KY7A 2FKMX 2H4LX 1LXTA 3CVSA 1WQAA
chains in the Genus database with same CATH topology
1JFIC 2IV8A 1VOKA 2D0BA 1QN9A 1NGMA 1R4XA 3SNSA 1QN8A 3ASMA 2NOHA 1FN7A 3F10A 1MP9A 1N39A 1KY6A 3H1ZA 1UT4A 1UT7A 3OC3C 4TPSA 1C9BB 4DULA 1HU0A 1KYDA 5IYDP 2NOFA 2FGTA 2HZMA 2NOLA 2LAEA 2MJ7A 1LWWA 1M3HA 5IYBP 1QN7A 1YQLA 3N89A 3DPUA 1QN6A 3DPTA 1AISA 2G30A 1N3CA 1YQRA 3I0XA 3HS9A 3KRMA 1QNCA 1QNAA 2I5WA 1QNEA 1TBAB 5AN4A 4ROCB 4Q11A 1YTFA 3HS8A 3RPJA 2D0AA 1YQMA 1KYUA 1N3AA 2D0CA 3IH7A 3I0WA 1NH2A 1QNBA 2VJ0A 1M3QA 1VTOA 3OCIA 1B9KA 4I8OA 3VN5A 1PCZA 4B0AA 1QTSA 3KTUA 2XHIA 2O3OA 1KYFA 1YQKA 1QN4A 4EJYA 5IYCP 1LWYA 1TBPA 2IV9A 1RM1A 1NVPA 1VOLB 2JOIA 2NOEA 2HZSA 3OSMA 2MZ8A 4EJZA 4ROEB 3F0ZA 2NOZA 1W80A 1EBMA 1QN3A 4WZSD 2NOIA 1QTPA 1CDWA 1PZDA 1E42A 1KO9A 2NOBA 2YH5A 1VTLE 1QN5A 1D3UA 3ULXA 4RODB 3OSTA 2Z8UA 1YTBA 1LWVA 1TGHA 4PY5A 1KY7A 3EIKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KRM A;  3N89 A; 
#chains in the Genus database with same CATH topology
 1JFI C;  3PMG A;  2IV8 A;  1VOK A;  2D0B A;  1QN9 A;  1NGM A;  1R4X A;  3SNS A;  1QN8 A;  4EAK A;  3ASM A;  2NOH A;  1EUV A;  2NVM A;  4QG5 A;  1FN7 A;  2NWV A;  3F10 A;  5F9C A;  1MP9 A;  3CVT A;  3EIK A;  2DKD A;  2QLV A;  1MPG A;  3UW2 A;  1N39 A;  2QRD A;  1KY6 A;  2V9J A;  1UT4 A;  3H1Z A;  3I3W A;  1UT7 A;  3OC3 C;  4D7R A;  4EAG A;  4TPS A;  1KFI A;  2ZFD B;  1J3M A;  1C9B B;  4HJH A;  2Y8Q A;  3TDH A;  4DUL A;  5BMP A;  1HU0 A;  1KYD A;  1UL7 A;  2FUV A;  2OOY A;  5BMN A;  2YA3 A;  1V5S A;  1Q9U A;  1JDY A;  1C47 A;  3CWS A;  5IYD P;  2JHN A;  2NOF A;  2FGT A;  2OOX A;  3RSM A;  2HZM A;  2NOL A;  2LAE A;  2QRC A;  2MJ7 A;  4WX8 A;  2V92 A;  5JMV D;  1M3H A;  1LWW A;  5IYB P;  3EAY A;  3BKQ X;  3ENO C;  2Z0F A;  3C04 A;  1QN7 A;  3CWA A;  1YQL A;  2FKF A;  3CW7 A;  3N89 A;  3DPU A;  1QN6 A;  1WJW A;  3DPT A;  5JN5 A;  2JHJ A;  1AIS A;  2G30 A;  1N3C A;  1YQR A;  2R5X A;  3I0X A;  2NLV A;  1K35 A;  2QR1 A;  3HS9 A;  3KRM A;  5HSH A;  1QNA A;  1QNC A;  1QNE A;  2I5W A;  3NA5 A;  1TBA B;  5AN4 A;  1P5D X;  4ROC B;  1PCJ X;  4Q11 A;  3PDK A;  1C4G A;  1T6A A;  1YTF A;  3HS8 A;  3RPJ A;  2D0A A;  1VKL A;  4MRQ A;  1YQM A;  1KYU A;  1M5Q 1;  2QRE A;  3OSE A;  4WXA A;  1N3A A;  5EPC A;  2D0C A;  3IH7 A;  3D4V A;  3I0W A;  3OH9 A;  3CWU A;  1NH2 A;  2VJ0 A;  1QNB A;  1M3Q A;  1VTO A;  3CWT A;  3OCI A;  1B9K A;  1DIZ A;  4I8O A;  3VN5 A;  1PCZ A;  4B0A A;  1QTS A;  3KTU A;  3OLP A;  2O3O A;  1KYF A;  4EAI A;  2XHI A;  3ENC A;  1YQK A;  1XSZ A;  1QN4 A;  2HL8 A;  3OH6 A;  4EJY A;  5IYC P;  1LWY A;  2F7L A;  5KL0 A;  1TBP A;  2IV9 A;  1RM1 A;  1NVP A;  1VOL B;  4EAJ A;  3D7Q A;  1K2Y X;  1PVS A;  2HKP A;  2JOI A;  2NOE A;  2HZS A;  3OGD A;  3OSM A;  2MZ8 A;  4EJZ A;  4C7P A;  2DKA A;  4ROE B;  4BJU A;  3F0Z A;  2NOZ A;  2HL9 A;  1W80 A;  2PWW A;  1EBM A;  2DKC A;  4D7Q A;  1QN3 A;  4WZS D;  2NOI A;  1P5G X;  1KFQ A;  2H5A X;  4EAL A;  4IL8 A;  3TE5 A;  1QTP A;  2V8Q A;  4CFF A;  1CDW A;  1PCM X;  1PZD A;  1E42 A;  1KO9 A;  2Y8L A;  2NOB A;  2YH5 A;  1VTL E;  1QN5 A;  1D3U A;  3ULX A;  2EHB D;  1TUO A;  4ROD B;  3OST A;  2Z8U A;  3T4N A;  1YTB A;  1LWV A;  1TGH A;  4PY5 A;  2JPI A;  1KY7 A;  2FKM X;  2H4L X;  1LXT A;  3CVS A;  1WQA A; 
#chains in the Genus database with same CATH homology
 1JFI C;  2IV8 A;  1VOK A;  2D0B A;  1QN9 A;  1NGM A;  1R4X A;  3SNS A;  1QN8 A;  3ASM A;  2NOH A;  1FN7 A;  3F10 A;  1MP9 A;  1N39 A;  1KY6 A;  3H1Z A;  1UT4 A;  1UT7 A;  3OC3 C;  4TPS A;  1C9B B;  4DUL A;  1HU0 A;  1KYD A;  5IYD P;  2NOF A;  2FGT A;  2HZM A;  2NOL A;  2LAE A;  2MJ7 A;  1LWW A;  1M3H A;  5IYB P;  1QN7 A;  1YQL A;  3N89 A;  3DPU A;  1QN6 A;  3DPT A;  1AIS A;  2G30 A;  1N3C A;  1YQR A;  3I0X A;  3HS9 A;  3KRM A;  1QNC A;  1QNA A;  2I5W A;  1QNE A;  1TBA B;  5AN4 A;  4ROC B;  4Q11 A;  1YTF A;  3HS8 A;  3RPJ A;  2D0A A;  1YQM A;  1KYU A;  1N3A A;  2D0C A;  3IH7 A;  3I0W A;  1NH2 A;  1QNB A;  2VJ0 A;  1M3Q A;  1VTO A;  3OCI A;  1B9K A;  4I8O A;  3VN5 A;  1PCZ A;  4B0A A;  1QTS A;  3KTU A;  2XHI A;  2O3O A;  1KYF A;  1YQK A;  1QN4 A;  4EJY A;  5IYC P;  1LWY A;  1TBP A;  2IV9 A;  1RM1 A;  1NVP A;  1VOL B;  2JOI A;  2NOE A;  2HZS A;  3OSM A;  2MZ8 A;  4EJZ A;  4ROE B;  3F0Z A;  2NOZ A;  1W80 A;  1EBM A;  1QN3 A;  4WZS D;  2NOI A;  1QTP A;  1CDW A;  1PZD A;  1E42 A;  1KO9 A;  2NOB A;  2YH5 A;  1VTL E;  1QN5 A;  1D3U A;  3ULX A;  4ROD B;  3OST A;  2Z8U A;  1YTB A;  1LWV A;  1TGH A;  4PY5 A;  1KY7 A;  3EIK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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