3N89A

Kh domains
Total Genus 94
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
366
structure length
337
Chain Sequence
HIHGLPLPSNIPMIEINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCHFTVFMALSKMKMPLHELQAHVRQNPIQNVEMSFVDAPVTTYLRITAREKNQHELIEAAKRLNEILFRPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPGNIYEIKVVGNIDNVLKARRYIMDLLPISMCFNIKNTDMANIHMIIDESGIILKMTPSVYEPADLLSGEVPLNCASLRSKEFNIKKLYTAYQKVLSKKFDFIAPQPNDYDNSIWHHSLPANFLKNFNMP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Defective in germ line development protein 3, isoform a
publication title Four KH domains of the C. elegans Bicaudal-C ortholog GLD-3 form a globular structural platform.
pubmed doi rcsb
source organism Caenorhabditis elegans
molecule tags Cell cycle
total genus 94
structure length 337
sequence length 366
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17905 KH_10 GLD-3 KH domain 5
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.210 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 3n89A02
3.30.310.270 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 3n89A01
3N89A 3KRMA
chains in the Genus database with same CATH superfamily
1WQAA 1PCZA 3F0ZA 2NWVA 3OSEA 5IYDP 4BJUA 2O3OA 5IYCP 1LWWA 4TPSA 1WJWA 3PDKA 3RPJA 3SNSA 1W80A 3OSMA 5BMNA 1KYDA 2H4LX 1M3QA 2LAEA 1V5SA 4D7QA 2HL8A 3HS8A 3VN5A 2XHIA 1QN3A 3OSTA 3CWSA 1C9BB 4C7PA 2QR1A 1XSZA 4HJHA 1UT4A 1LWYA 1QNCA 3PMGA 2HKPA 1B9KA 3OCIA 4Q11A 4WZSD 1VKLA 1QN6A 1Q9UA 4RODB 1M3HA 1QN9A 4QG5A 1QNEA 4I8OA 1QTSA 3CWTA 4CFFA 3OGDA 5KL0A 3I3WA 2DKCA 5HSHA 2YH5A 1NVPA 1EBMA 3NA5A 1VOLB 2OOYA 1YTBA 4IL8A 2QLVA 4WXAA 4EAJA 3EIKA 3H1ZA 2NOEA 2NLVA 4B0AA 1C4GA 2EHBD 2Y8LA 1YQRA 1D3UA 2NOLA 2IV8A 1QNBA 2F7LA 1KO9A 2D0BA 2QREA 2Z8UA 4ROEB 1TBPA 2R5XA 1KY6A 2V8QA 2FGTA 3HS9A 2YA3A 1YQKA 4EAKA 1FN7A 4WX8A 4EAGA 1KY7A 1QN8A 2JHJA 1N39A 4EJZA 3CWUA 2DKDA 1TUOA 1PCJX 3F10A 3ULXA 1YQLA 1K2YX 4EJYA 5IYBP 2FUVA 2D0AA 2JOIA 3KTUA 3DPUA 3I0XA 1QN7A 1NGMA 2G30A 2VJ0A 1QN5A 1KFQA 1YQMA 1QN4A 1VTOA 1KFIA 1TBAB 5BMPA 2V92A 1J3MA 2FKFA 1JDYA 3N89A 3ENCA 3KRMA 4D7RA 3IH7A 2ZFDB 3ENOC 2NOIA 2NOZA 1DIZA 3CW7A 1RM1A 3I0WA 3CVSA 1E42A 1PCMX 1T6AA 3ASMA 3RSMA 1EUVA 2D0CA 5F9CA 3T4NA 3TE5A 1CDWA 2QRCA 2DKAA 1PZDA 1LWVA 2V9JA 2Z0FA 2Y8QA 2PWWA 3CWAA 2MZ8A 2HZSA 3DPTA 5JN5A 1K35A 1P5DX 1KYUA 1VOKA 2NOBA 3EAYA 1QNAA 1N3CA 3OH6A 1AISA 3D4VA 1QTPA 1PVSA 2NVMA 1TGHA 5AN4A 2I5WA 5EPCA 3UW2A 4PY5A 2FKMX 2IV9A 3BKQX 1MPGA 1P5GX 2MJ7A 1R4XA 1JFIC 2QRDA 1MP9A 4EAIA 2NOHA 3CVTA 2HZMA 3D7QA 4MRQA 1UT7A 1YTFA 4ROCB 1N3AA 1KYFA 2OOXA 3OH9A 2HL9A 3OC3C 3OLPA 4DULA 3C04A 1HU0A 2JHNA 1C47A 1VTLE 2NOFA 2H5AX 1M5Q1 4EALA 1NH2A 5JMVD 3TDHA 1LXTA 2JPIA 1UL7A
chains in the Genus database with same CATH topology
1PCZA 3F0ZA 5IYDP 2O3OA 5IYCP 1LWWA 4TPSA 3RPJA 3SNSA 1W80A 3OSMA 1KYDA 1M3QA 2LAEA 2XHIA 3HS8A 3VN5A 1QN3A 3OSTA 1C9BB 1UT4A 1LWYA 1QNCA 1B9KA 3OCIA 4Q11A 4WZSD 1QN6A 4RODB 1M3HA 1QN9A 1QNEA 4I8OA 1QTSA 2YH5A 1NVPA 1EBMA 1VOLB 1YTBA 3EIKA 3H1ZA 2NOEA 4B0AA 1YQRA 1D3UA 2NOLA 2IV8A 1QNBA 1KO9A 2D0BA 2Z8UA 4ROEB 1TBPA 1KY6A 2FGTA 3HS9A 1YQKA 1FN7A 1KY7A 1QN8A 1N39A 4EJZA 3F10A 3ULXA 1YQLA 4EJYA 5IYBP 2D0AA 2JOIA 3KTUA 3DPUA 3I0XA 1QN7A 1NGMA 2G30A 2VJ0A 1QN5A 1YQMA 1QN4A 1VTOA 1TBAB 3N89A 3KRMA 2NOZA 3IH7A 2NOIA 1RM1A 3I0WA 1E42A 3ASMA 2D0CA 1CDWA 1PZDA 1LWVA 2MZ8A 2HZSA 3DPTA 1VOKA 1KYUA 2NOBA 1QNAA 1N3CA 1AISA 1QTPA 1TGHA 5AN4A 4PY5A 2IV9A 2MJ7A 1JFIC 1R4XA 1MP9A 2NOHA 2HZMA 1YTFA 2I5WA 1UT7A 4ROCB 1N3AA 1KYFA 3OC3C 1HU0A 4DULA 1VTLE 2NOFA 1NH2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N89 A;  3KRM A; 
#chains in the Genus database with same CATH topology
 1WQA A;  1PCZ A;  3F0Z A;  2NWV A;  3OSE A;  5IYD P;  4BJU A;  2O3O A;  5IYC P;  1LWW A;  4TPS A;  1WJW A;  3PDK A;  3RPJ A;  3SNS A;  1W80 A;  3OSM A;  5BMN A;  1KYD A;  2H4L X;  1M3Q A;  2LAE A;  1V5S A;  4D7Q A;  2HL8 A;  3HS8 A;  3VN5 A;  2XHI A;  1QN3 A;  3OST A;  3CWS A;  1C9B B;  4C7P A;  2QR1 A;  1XSZ A;  4HJH A;  1UT4 A;  1LWY A;  1QNC A;  3PMG A;  2HKP A;  1B9K A;  3OCI A;  4Q11 A;  4WZS D;  1VKL A;  1QN6 A;  1Q9U A;  4ROD B;  1M3H A;  1QN9 A;  4QG5 A;  1QNE A;  4I8O A;  1QTS A;  3CWT A;  4CFF A;  3OGD A;  5KL0 A;  3I3W A;  2DKC A;  5HSH A;  2YH5 A;  1NVP A;  1EBM A;  3NA5 A;  1VOL B;  2OOY A;  1YTB A;  4IL8 A;  2QLV A;  4WXA A;  4EAJ A;  3EIK A;  3H1Z A;  2NOE A;  2NLV A;  4B0A A;  1C4G A;  2EHB D;  2Y8L A;  1YQR A;  1D3U A;  2NOL A;  2IV8 A;  1QNB A;  2F7L A;  1KO9 A;  2D0B A;  2QRE A;  2Z8U A;  4ROE B;  1TBP A;  2R5X A;  1KY6 A;  2V8Q A;  2FGT A;  3HS9 A;  2YA3 A;  1YQK A;  4EAK A;  1FN7 A;  4WX8 A;  4EAG A;  1KY7 A;  1QN8 A;  2JHJ A;  1N39 A;  4EJZ A;  3CWU A;  2DKD A;  1TUO A;  1PCJ X;  3F10 A;  3ULX A;  1YQL A;  1K2Y X;  4EJY A;  5IYB P;  2FUV A;  2D0A A;  2JOI A;  3KTU A;  3DPU A;  3I0X A;  1QN7 A;  1NGM A;  2G30 A;  2VJ0 A;  1QN5 A;  1KFQ A;  1YQM A;  1QN4 A;  1VTO A;  1KFI A;  1TBA B;  5BMP A;  2V92 A;  1J3M A;  2FKF A;  1JDY A;  3N89 A;  3ENC A;  3KRM A;  4D7R A;  3IH7 A;  2ZFD B;  3ENO C;  2NOI A;  2NOZ A;  1DIZ A;  3CW7 A;  1RM1 A;  3I0W A;  3CVS A;  1E42 A;  1PCM X;  1T6A A;  3ASM A;  3RSM A;  1EUV A;  2D0C A;  5F9C A;  3T4N A;  3TE5 A;  1CDW A;  2QRC A;  2DKA A;  1PZD A;  1LWV A;  2V9J A;  2Z0F A;  2Y8Q A;  2PWW A;  3CWA A;  2MZ8 A;  2HZS A;  3DPT A;  5JN5 A;  1K35 A;  1P5D X;  1KYU A;  1VOK A;  2NOB A;  3EAY A;  1QNA A;  1N3C A;  3OH6 A;  1AIS A;  3D4V A;  1QTP A;  1PVS A;  2NVM A;  1TGH A;  5AN4 A;  2I5W A;  5EPC A;  3UW2 A;  4PY5 A;  2FKM X;  2IV9 A;  3BKQ X;  1MPG A;  1P5G X;  2MJ7 A;  1R4X A;  1JFI C;  2QRD A;  1MP9 A;  4EAI A;  2NOH A;  3CVT A;  2HZM A;  3D7Q A;  4MRQ A;  1UT7 A;  1YTF A;  4ROC B;  1N3A A;  1KYF A;  2OOX A;  3OH9 A;  2HL9 A;  3OC3 C;  3OLP A;  4DUL A;  3C04 A;  1HU0 A;  2JHN A;  1C47 A;  1VTL E;  2NOF A;  2H5A X;  1M5Q 1;  4EAL A;  1NH2 A;  5JMV D;  3TDH A;  1LXT A;  2JPI A;  1UL7 A; 
#chains in the Genus database with same CATH homology
 1PCZ A;  3F0Z A;  5IYD P;  2O3O A;  5IYC P;  1LWW A;  4TPS A;  3RPJ A;  3SNS A;  1W80 A;  3OSM A;  1KYD A;  1M3Q A;  2LAE A;  2XHI A;  3HS8 A;  3VN5 A;  1QN3 A;  3OST A;  1C9B B;  1UT4 A;  1LWY A;  1QNC A;  1B9K A;  3OCI A;  4Q11 A;  4WZS D;  1QN6 A;  4ROD B;  1M3H A;  1QN9 A;  1QNE A;  4I8O A;  1QTS A;  2YH5 A;  1NVP A;  1EBM A;  1VOL B;  1YTB A;  3EIK A;  3H1Z A;  2NOE A;  4B0A A;  1YQR A;  1D3U A;  2NOL A;  2IV8 A;  1QNB A;  1KO9 A;  2D0B A;  2Z8U A;  4ROE B;  1TBP A;  1KY6 A;  2FGT A;  3HS9 A;  1YQK A;  1FN7 A;  1KY7 A;  1QN8 A;  1N39 A;  4EJZ A;  3F10 A;  3ULX A;  1YQL A;  4EJY A;  5IYB P;  2D0A A;  2JOI A;  3KTU A;  3DPU A;  3I0X A;  1QN7 A;  1NGM A;  2G30 A;  2VJ0 A;  1QN5 A;  1YQM A;  1QN4 A;  1VTO A;  1TBA B;  3N89 A;  3KRM A;  2NOZ A;  3IH7 A;  2NOI A;  1RM1 A;  3I0W A;  1E42 A;  3ASM A;  2D0C A;  1CDW A;  1PZD A;  1LWV A;  2MZ8 A;  2HZS A;  3DPT A;  1VOK A;  1KYU A;  2NOB A;  1QNA A;  1N3C A;  1AIS A;  1QTP A;  1TGH A;  5AN4 A;  4PY5 A;  2IV9 A;  2MJ7 A;  1JFI C;  1R4X A;  1MP9 A;  2NOH A;  2HZM A;  1YTF A;  2I5W A;  1UT7 A;  4ROC B;  1N3A A;  1KYF A;  3OC3 C;  1HU0 A;  4DUL A;  1VTL E;  2NOF A;  1NH2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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