2MZ8A

Solution nmr structure of salmonella typhimurium transcriptional regulator protein crl
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
133
structure length
133
Chain Sequence
MTLPSGHPKSRLIKKFTALGPYIREGQCEDNRFFFDCLAVCVNVKPAPEKREFWGWWMELEAQEKRFTYRYQFGLFDKEGNWTVVPINETEVVERLEYTLREFHEKLRDLLISMELALEPSDDFNDEPVKLSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription regulator
source organism Salmonella enterica subsp. enterica serovar typhimurium str. lt2
publication title Binding interface between the Salmonella sigma (S)/RpoS subunit of RNA polymerase and Crl: hints from bacterial species lacking crl.
pubmed doi rcsb
molecule keywords Sigma factor-binding protein Crl
total genus 22
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2015-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07417 Crl Sigma factor-binding transcriptional regulator Crl
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.230 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 2mz8A00
3RPJA 2MZ8A 4Q11A
chains in the Genus database with same CATH superfamily
5F9CA 5IYDP 4D7QA 1LWYA 2JHJA 1PZDA 1KY6A 1NGMA 1QN6A 4I8OA 3TE5A 1KFQA 4IL8A 2QRCA 4DULA 1UT7A 3EAYA 1EBMA 1QN8A 2NOZA 2FUVA 1TUOA 2EHBD 4EALA 4PY5A 1YQLA 3I0XA 3F10A 1C47A 2QREA 2F7LA 1LXTA 2V9JA 1LWVA 2DKCA 3T4NA 1KYFA 2DKDA 1M3HA 1PVSA 1XSZA 3ASMA 1FN7A 1QN4A 3CWSA 2FKFA 1PCZA 1W80A 3D7QA 3D4VA 1HU0A 1NVPA 2NWVA 4EAIA 1VKLA 2V8QA 3SNSA 4BJUA 3DPUA 3DPTA 2H5AX 3HS8A 5BMPA 1VTLE 2IV8A 3OSTA 4WX8A 2QLVA 3OLPA 3OSMA 4MRQA 2NLVA 2DKAA 2PWWA 3PMGA 1T6AA 4C7PA 5JMVD 3EIKA 1KYDA 1R4XA 3RSMA 1QTPA 1D3UA 5HSHA 2HL8A 2NVMA 2HZSA 1MP9A 1MPGA 1QNBA 3F0ZA 4HJHA 4EJYA 1TBAB 3CVSA 1CDWA 4CFFA 1QN3A 4EAJA 1PCJX 3BKQX 3KTUA 1NH2A 1JFIC 3TDHA 5BMNA 2H4LX 2Y8LA 2YA3A 1M3QA 1KO9A 2YH5A 1TBPA 1E42A 2QRDA 2JOIA 1LWWA 1C4GA 3NA5A 3RPJA 1TGHA 1PCMX 3C04A 3ENCA 4B0AA 1VOLB 2NOEA 5IYBP 1AISA 1UT4A 2Z8UA 2MZ8A 2NOBA 3CWAA 4EAGA 1JDYA 2MJ7A 1M5Q1 1KY7A 2NOLA 4ROEB 3UW2A 1C9BB 2LAEA 2Y8QA 2O3OA 4D7RA 2ZFDB 1YQRA 1YQMA 2G30A 3H1ZA 2NOFA 2FKMX 2Z0FA 2NOIA 1QNAA 3OSEA 2I5WA 3N89A 2HZMA 4WZSD 5AN4A 2IV9A 1QNEA 5IYCP 5JN5A 1Q9UA 2R5XA 1V5SA 2HL9A 5EPCA 3I3WA 3OH6A 1N3CA 1DIZA 3I0WA 3CVTA 1K2YX 3ENOC 5KL0A 1WJWA 1P5DX 3PDKA 1J3MA 2VJ0A 3OGDA 3VN5A 2D0AA 3IH7A 1QN7A 3OH9A 1N3AA 2JHNA 1KFIA 1UL7A 2OOYA 1B9KA 2HKPA 1QN5A 2D0CA 2D0BA 3CWUA 4EAKA 1QN9A 1KYUA 3HS9A 3OCIA 4RODB 1VOKA 1K35A 2OOXA 3ULXA 4TPSA 1P5GX 1YQKA 1YTBA 3CW7A 3OC3C 3CWTA 4EJZA 2XHIA 2JPIA 1QNCA 4ROCB 4Q11A 1YTFA 4WXAA 2NOHA 1WQAA 1VTOA 3KRMA 2FGTA 1RM1A 1EUVA 2V92A 1N39A 4QG5A 2QR1A 1QTSA
chains in the Genus database with same CATH topology
5IYDP 1LWYA 1PZDA 1KY6A 1NGMA 1QN6A 4I8OA 4DULA 1UT7A 1EBMA 1QN8A 2NOZA 4PY5A 1YQLA 3I0XA 3F10A 1LWVA 1KYFA 1FN7A 1M3HA 1QN4A 3ASMA 1PCZA 1W80A 1HU0A 1NVPA 3SNSA 3DPUA 3DPTA 3HS8A 1VTLE 2IV8A 3OSTA 3OSMA 3EIKA 1KYDA 1R4XA 1D3UA 1QTPA 2HZSA 1MP9A 1QNBA 3F0ZA 4EJYA 1TBAB 1CDWA 1QN3A 3KTUA 1NH2A 1JFIC 1M3QA 1KO9A 2YH5A 1TBPA 1E42A 2JOIA 1LWWA 3RPJA 1TGHA 4B0AA 1VOLB 2NOEA 5IYBP 1AISA 1UT4A 2Z8UA 2MZ8A 2NOBA 2MJ7A 1KY7A 2NOLA 4ROEB 1C9BB 2LAEA 2O3OA 1YQRA 1YQMA 2G30A 3H1ZA 2NOFA 2NOIA 1QNAA 2I5WA 3N89A 2HZMA 4WZSD 5AN4A 2IV9A 1QNEA 5IYCP 1N3CA 3I0WA 2VJ0A 3VN5A 2D0AA 3IH7A 1QN7A 1N3AA 1B9KA 1QN5A 2D0CA 2D0BA 1QN9A 1KYUA 3HS9A 3OCIA 4RODB 1VOKA 1YQKA 3ULXA 4TPSA 1YTBA 3OC3C 4EJZA 2XHIA 1QNCA 4ROCB 4Q11A 1YTFA 2NOHA 1VTOA 3KRMA 2FGTA 1RM1A 1N39A 1QTSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RPJ A;  2MZ8 A;  4Q11 A; 
#chains in the Genus database with same CATH topology
 5F9C A;  5IYD P;  4D7Q A;  1LWY A;  2JHJ A;  1PZD A;  1KY6 A;  1NGM A;  1QN6 A;  4I8O A;  3TE5 A;  1KFQ A;  4IL8 A;  2QRC A;  4DUL A;  1UT7 A;  3EAY A;  1EBM A;  1QN8 A;  2NOZ A;  2FUV A;  1TUO A;  2EHB D;  4EAL A;  4PY5 A;  1YQL A;  3I0X A;  3F10 A;  1C47 A;  2QRE A;  2F7L A;  1LXT A;  2V9J A;  1LWV A;  2DKC A;  3T4N A;  1KYF A;  2DKD A;  1M3H A;  1PVS A;  1XSZ A;  3ASM A;  1FN7 A;  1QN4 A;  3CWS A;  2FKF A;  1PCZ A;  1W80 A;  3D7Q A;  3D4V A;  1HU0 A;  1NVP A;  2NWV A;  4EAI A;  1VKL A;  2V8Q A;  3SNS A;  4BJU A;  3DPU A;  3DPT A;  2H5A X;  3HS8 A;  5BMP A;  1VTL E;  2IV8 A;  3OST A;  4WX8 A;  2QLV A;  3OLP A;  3OSM A;  4MRQ A;  2NLV A;  2DKA A;  2PWW A;  3PMG A;  1T6A A;  4C7P A;  5JMV D;  3EIK A;  1KYD A;  1R4X A;  3RSM A;  1QTP A;  1D3U A;  5HSH A;  2HL8 A;  2NVM A;  2HZS A;  1MP9 A;  1MPG A;  1QNB A;  3F0Z A;  4HJH A;  4EJY A;  1TBA B;  3CVS A;  1CDW A;  4CFF A;  1QN3 A;  4EAJ A;  1PCJ X;  3BKQ X;  3KTU A;  1NH2 A;  1JFI C;  3TDH A;  5BMN A;  2H4L X;  2Y8L A;  2YA3 A;  1M3Q A;  1KO9 A;  2YH5 A;  1TBP A;  1E42 A;  2QRD A;  2JOI A;  1LWW A;  1C4G A;  3NA5 A;  3RPJ A;  1TGH A;  1PCM X;  3C04 A;  3ENC A;  4B0A A;  1VOL B;  2NOE A;  5IYB P;  1AIS A;  1UT4 A;  2Z8U A;  2MZ8 A;  2NOB A;  3CWA A;  4EAG A;  1JDY A;  2MJ7 A;  1M5Q 1;  1KY7 A;  2NOL A;  4ROE B;  3UW2 A;  1C9B B;  2LAE A;  2Y8Q A;  2O3O A;  4D7R A;  2ZFD B;  1YQR A;  1YQM A;  2G30 A;  3H1Z A;  2NOF A;  2FKM X;  2Z0F A;  2NOI A;  1QNA A;  3OSE A;  2I5W A;  3N89 A;  2HZM A;  4WZS D;  5AN4 A;  2IV9 A;  1QNE A;  5IYC P;  5JN5 A;  1Q9U A;  2R5X A;  1V5S A;  2HL9 A;  5EPC A;  3I3W A;  3OH6 A;  1N3C A;  1DIZ A;  3I0W A;  3CVT A;  1K2Y X;  3ENO C;  5KL0 A;  1WJW A;  1P5D X;  3PDK A;  1J3M A;  2VJ0 A;  3OGD A;  3VN5 A;  2D0A A;  3IH7 A;  1QN7 A;  3OH9 A;  1N3A A;  2JHN A;  1KFI A;  1UL7 A;  2OOY A;  1B9K A;  2HKP A;  1QN5 A;  2D0C A;  2D0B A;  3CWU A;  4EAK A;  1QN9 A;  1KYU A;  3HS9 A;  3OCI A;  4ROD B;  1VOK A;  1K35 A;  2OOX A;  3ULX A;  4TPS A;  1P5G X;  1YQK A;  1YTB A;  3CW7 A;  3OC3 C;  3CWT A;  4EJZ A;  2XHI A;  2JPI A;  1QNC A;  4ROC B;  4Q11 A;  1YTF A;  4WXA A;  2NOH A;  1WQA A;  1VTO A;  3KRM A;  2FGT A;  1RM1 A;  1EUV A;  2V92 A;  1N39 A;  4QG5 A;  2QR1 A;  1QTS A; 
#chains in the Genus database with same CATH homology
 5IYD P;  1LWY A;  1PZD A;  1KY6 A;  1NGM A;  1QN6 A;  4I8O A;  4DUL A;  1UT7 A;  1EBM A;  1QN8 A;  2NOZ A;  4PY5 A;  1YQL A;  3I0X A;  3F10 A;  1LWV A;  1KYF A;  1FN7 A;  1M3H A;  1QN4 A;  3ASM A;  1PCZ A;  1W80 A;  1HU0 A;  1NVP A;  3SNS A;  3DPU A;  3DPT A;  3HS8 A;  1VTL E;  2IV8 A;  3OST A;  3OSM A;  3EIK A;  1KYD A;  1R4X A;  1D3U A;  1QTP A;  2HZS A;  1MP9 A;  1QNB A;  3F0Z A;  4EJY A;  1TBA B;  1CDW A;  1QN3 A;  3KTU A;  1NH2 A;  1JFI C;  1M3Q A;  1KO9 A;  2YH5 A;  1TBP A;  1E42 A;  2JOI A;  1LWW A;  3RPJ A;  1TGH A;  4B0A A;  1VOL B;  2NOE A;  5IYB P;  1AIS A;  1UT4 A;  2Z8U A;  2MZ8 A;  2NOB A;  2MJ7 A;  1KY7 A;  2NOL A;  4ROE B;  1C9B B;  2LAE A;  2O3O A;  1YQR A;  1YQM A;  2G30 A;  3H1Z A;  2NOF A;  2NOI A;  1QNA A;  2I5W A;  3N89 A;  2HZM A;  4WZS D;  5AN4 A;  2IV9 A;  1QNE A;  5IYC P;  1N3C A;  3I0W A;  2VJ0 A;  3VN5 A;  2D0A A;  3IH7 A;  1QN7 A;  1N3A A;  1B9K A;  1QN5 A;  2D0C A;  2D0B A;  1QN9 A;  1KYU A;  3HS9 A;  3OCI A;  4ROD B;  1VOK A;  1YQK A;  3ULX A;  4TPS A;  1YTB A;  3OC3 C;  4EJZ A;  2XHI A;  1QNC A;  4ROC B;  4Q11 A;  1YTF A;  2NOH A;  1VTO A;  3KRM A;  2FGT A;  1RM1 A;  1N39 A;  1QTS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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