3OCIA

Crystal structure of tbp (tata box binding protein)
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
179
structure length
179
Chain Sequence
SGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP.
pubmed doi rcsb
molecule keywords TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1)
molecule tags Transcription
source organism Encephalitozoon cuniculi
total genus 39
structure length 179
sequence length 179
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 3ociA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 3ociA02
1NGMA 1E42A 3VN5A 1QNAA 1R4XA 1VOLB 2D0CA 4WZSD 1D3UA 1KYFA 2D0AA 1QN7A 1YTFA 3OC3C 2IV9A 1PZDA 1QN8A 1QNCA 1TGHA 1NH2A 1KYDA 1QN9A 1AISA 5IYBP 3HS8A 1QN5A 1VTOA 1JFIC 1KYUA 1VOKA 1CDWA 4PY5A 4RODB 1QNEA 3ASMA 3OCIA 2IV8A 1KY6A 4ROCB 5IYCP 1C9BB 1QN4A 2D0BA 3H1ZA 1VTLE 1NVPA 1W80A 4ROEB 2Z8UA 1YTBA 1QTSA 1KY7A 1QNBA 2VJ0A 1TBAB 1TBPA 1PCZA 1QN3A 1B9KA 1QN6A 3EIKA 5IYDP 4B0AA 1RM1A 2MJ7A 2G30A 1QTPA 1MP9A 3HS9A
chains in the Genus database with same CATH superfamily
1C4GA 1K2YX 5AN4A 3OLPA 4WZSD 2XHIA 1D3UA 1P5GX 3CWAA 2QREA 2NOHA 3D7QA 2H4LX 1LXTA 3DPTA 3OSEA 5EPCA 2HKPA 5JN5A 3I0WA 1NH2A 1N39A 3OH6A 1AISA 4PY5A 3N89A 5BMNA 3CWUA 1FN7A 2NOLA 1UT4A 2IV8A 1LWYA 1YQRA 2D0BA 3H1ZA 5KL0A 4I8OA 3C04A 1W80A 2JOIA 3RSMA 1YQKA 1QTSA 2VJ0A 1KFQA 3PDKA 3F10A 2DKDA 3TE5A 2NOZA 3I0XA 3EIKA 1M3QA 2MJ7A 2DKCA 3SNSA 2QLVA 3HS9A 1R4XA 2Y8QA 2FUVA 3D4VA 2OOXA 3PMGA 4HJHA 1TGHA 1QN9A 1PVSA 2ZFDB 3OSTA 3HS8A 5IYBP 1JFIC 1CDWA 1VOKA 2V8QA 4Q11A 1QNEA 1N3CA 1C9BB 2NWVA 1C47A 2EHBD 3UW2A 1M5Q1 4EAGA 3CW7A 1TUOA 2Y8LA 1YTBA 2DKAA 1EUVA 3I3WA 2NOFA 1N3AA 2JHNA 1QN3A 1TBPA 1PCZA 3CWTA 2QR1A 1B9KA 2LAEA 2HL9A 4B0AA 3BKQX 3F0ZA 2FGTA 2Z8UA 1MP9A 1NGMA 1E42A 2YH5A 3ULXA 1WJWA 2QRDA 2R5XA 2NOBA 2O3OA 2HZSA 2D0CA 3DPUA 4QG5A 2MZ8A 4DULA 2D0AA 1YTFA 4EJYA 4TPSA 3OC3C 1PZDA 4EAKA 5HSHA 1QNCA 1JDYA 2NOIA 2YA3A 4WX8A 1PCJX 1VTOA 2JPIA 1KYUA 4D7RA 4IL8A 4EJZA 3ASMA 3OCIA 4ROCB 3ENOC 5IYCP 5JMVD 1V5SA 1YQLA 2I5WA 3CVSA 4ROEB 3OGDA 2H5AX 1T6AA 3KRMA 1QNBA 2NLVA 1KFIA 2NVMA 1LWVA 1M3HA 2V92A 2F7LA 2FKFA 2QRCA 1TBAB 5BMPA 4EAIA 1QN6A 1XSZA 2PWWA 1P5DX 1UL7A 2HL8A 1RM1A 2G30A 1LWWA 3OSMA 3TDHA 3CVTA 1DIZA 4CFFA 4BJUA 1VKLA 3ENCA 1KO9A 3VN5A 4D7QA 1QNAA 1VOLB 3CWSA 1KYFA 3IH7A 1YQMA 1QN7A 3RPJA 4MRQA 2IV9A 4C7PA 2V9JA 1QN8A 1PCMX 2FKMX 1KYDA 3NA5A 3KTUA 1QN5A 1K35A 1HU0A 4WXAA 3OH9A 2OOYA 4RODB 1KY6A 1J3MA 5F9CA 1QN4A 1WQAA 1MPGA 2NOEA 3EAYA 1VTLE 1UT7A 1NVPA 2Z0FA 1Q9UA 4EALA 1KY7A 4EAJA 2HZMA 3T4NA 2JHJA 5IYDP 1QTPA 1EBMA
chains in the Genus database with same CATH topology
5AN4A 4WZSD 2XHIA 1D3UA 2NOHA 3I0WA 3DPTA 1N39A 1NH2A 4PY5A 1AISA 3N89A 1FN7A 2NOLA 1UT4A 2IV8A 1LWYA 1YQRA 2D0BA 3H1ZA 4I8OA 1W80A 2JOIA 1YQKA 1QTSA 2VJ0A 3F10A 2NOZA 3I0XA 3EIKA 1M3QA 2MJ7A 3SNSA 3HS9A 1R4XA 1TGHA 1QN9A 3OSTA 5IYBP 3HS8A 1JFIC 1CDWA 1VOKA 4Q11A 1QNEA 1N3CA 1C9BB 1YTBA 2NOFA 1N3AA 1QN3A 1TBPA 1PCZA 1B9KA 2LAEA 4B0AA 3F0ZA 2FGTA 2Z8UA 1MP9A 1NGMA 1E42A 2YH5A 3ULXA 2NOBA 2O3OA 2HZSA 2D0CA 3DPUA 4DULA 2MZ8A 4EJYA 2D0AA 1YTFA 4TPSA 3OC3C 1PZDA 1QNCA 2NOIA 1VTOA 1KYUA 4EJZA 3ASMA 3OCIA 4ROCB 5IYCP 1YQLA 2I5WA 4ROEB 3KRMA 1QNBA 1LWVA 1M3HA 1TBAB 1QN6A 1RM1A 2G30A 1LWWA 3OSMA 3VN5A 1KO9A 1QNAA 1VOLB 1KYFA 3IH7A 1YQMA 1QN7A 3RPJA 2IV9A 1QN8A 1KYDA 3KTUA 1QN5A 1HU0A 4RODB 1KY6A 1QN4A 2NOEA 1VTLE 1UT7A 1NVPA 1KY7A 2HZMA 5IYDP 1QTPA 1EBMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NGM A;  1E42 A;  3VN5 A;  1QNA A;  1R4X A;  1VOL B;  2D0C A;  4WZS D;  1D3U A;  1KYF A;  2D0A A;  1QN7 A;  1YTF A;  3OC3 C;  2IV9 A;  1PZD A;  1QN8 A;  1QNC A;  1TGH A;  1NH2 A;  1KYD A;  1QN9 A;  1AIS A;  5IYB P;  3HS8 A;  1QN5 A;  1VTO A;  1JFI C;  1KYU A;  1VOK A;  1CDW A;  4PY5 A;  4ROD B;  1QNE A;  3ASM A;  3OCI A;  2IV8 A;  1KY6 A;  4ROC B;  5IYC P;  1C9B B;  1QN4 A;  2D0B A;  3H1Z A;  1VTL E;  1NVP A;  1W80 A;  4ROE B;  2Z8U A;  1YTB A;  1QTS A;  1KY7 A;  1QNB A;  2VJ0 A;  1TBA B;  1TBP A;  1PCZ A;  1QN3 A;  1B9K A;  1QN6 A;  3EIK A;  5IYD P;  4B0A A;  1RM1 A;  2MJ7 A;  2G30 A;  1QTP A;  1MP9 A;  3HS9 A; 
#chains in the Genus database with same CATH topology
 1C4G A;  1K2Y X;  5AN4 A;  3OLP A;  4WZS D;  2XHI A;  1D3U A;  1P5G X;  3CWA A;  2QRE A;  2NOH A;  3D7Q A;  2H4L X;  1LXT A;  3DPT A;  3OSE A;  5EPC A;  2HKP A;  5JN5 A;  3I0W A;  1NH2 A;  1N39 A;  3OH6 A;  1AIS A;  4PY5 A;  3N89 A;  5BMN A;  3CWU A;  1FN7 A;  2NOL A;  1UT4 A;  2IV8 A;  1LWY A;  1YQR A;  2D0B A;  3H1Z A;  5KL0 A;  4I8O A;  3C04 A;  1W80 A;  2JOI A;  3RSM A;  1YQK A;  1QTS A;  2VJ0 A;  1KFQ A;  3PDK A;  3F10 A;  2DKD A;  3TE5 A;  2NOZ A;  3I0X A;  3EIK A;  1M3Q A;  2MJ7 A;  2DKC A;  3SNS A;  2QLV A;  3HS9 A;  1R4X A;  2Y8Q A;  2FUV A;  3D4V A;  2OOX A;  3PMG A;  4HJH A;  1TGH A;  1QN9 A;  1PVS A;  2ZFD B;  3OST A;  3HS8 A;  5IYB P;  1JFI C;  1CDW A;  1VOK A;  2V8Q A;  4Q11 A;  1QNE A;  1N3C A;  1C9B B;  2NWV A;  1C47 A;  2EHB D;  3UW2 A;  1M5Q 1;  4EAG A;  3CW7 A;  1TUO A;  2Y8L A;  1YTB A;  2DKA A;  1EUV A;  3I3W A;  2NOF A;  1N3A A;  2JHN A;  1QN3 A;  1TBP A;  1PCZ A;  3CWT A;  2QR1 A;  1B9K A;  2LAE A;  2HL9 A;  4B0A A;  3BKQ X;  3F0Z A;  2FGT A;  2Z8U A;  1MP9 A;  1NGM A;  1E42 A;  2YH5 A;  3ULX A;  1WJW A;  2QRD A;  2R5X A;  2NOB A;  2O3O A;  2HZS A;  2D0C A;  3DPU A;  4QG5 A;  2MZ8 A;  4DUL A;  2D0A A;  1YTF A;  4EJY A;  4TPS A;  3OC3 C;  1PZD A;  4EAK A;  5HSH A;  1QNC A;  1JDY A;  2NOI A;  2YA3 A;  4WX8 A;  1PCJ X;  1VTO A;  2JPI A;  1KYU A;  4D7R A;  4IL8 A;  4EJZ A;  3ASM A;  3OCI A;  4ROC B;  3ENO C;  5IYC P;  5JMV D;  1V5S A;  1YQL A;  2I5W A;  3CVS A;  4ROE B;  3OGD A;  2H5A X;  1T6A A;  3KRM A;  1QNB A;  2NLV A;  1KFI A;  2NVM A;  1LWV A;  1M3H A;  2V92 A;  2F7L A;  2FKF A;  2QRC A;  1TBA B;  5BMP A;  4EAI A;  1QN6 A;  1XSZ A;  2PWW A;  1P5D X;  1UL7 A;  2HL8 A;  1RM1 A;  2G30 A;  1LWW A;  3OSM A;  3TDH A;  3CVT A;  1DIZ A;  4CFF A;  4BJU A;  1VKL A;  3ENC A;  1KO9 A;  3VN5 A;  4D7Q A;  1QNA A;  1VOL B;  3CWS A;  1KYF A;  3IH7 A;  1YQM A;  1QN7 A;  3RPJ A;  4MRQ A;  2IV9 A;  4C7P A;  2V9J A;  1QN8 A;  1PCM X;  2FKM X;  1KYD A;  3NA5 A;  3KTU A;  1QN5 A;  1K35 A;  1HU0 A;  4WXA A;  3OH9 A;  2OOY A;  4ROD B;  1KY6 A;  1J3M A;  5F9C A;  1QN4 A;  1WQA A;  1MPG A;  2NOE A;  3EAY A;  1VTL E;  1UT7 A;  1NVP A;  2Z0F A;  1Q9U A;  4EAL A;  1KY7 A;  4EAJ A;  2HZM A;  3T4N A;  2JHJ A;  5IYD P;  1QTP A;  1EBM A; 
#chains in the Genus database with same CATH homology
 5AN4 A;  4WZS D;  2XHI A;  1D3U A;  2NOH A;  3I0W A;  3DPT A;  1N39 A;  1NH2 A;  4PY5 A;  1AIS A;  3N89 A;  1FN7 A;  2NOL A;  1UT4 A;  2IV8 A;  1LWY A;  1YQR A;  2D0B A;  3H1Z A;  4I8O A;  1W80 A;  2JOI A;  1YQK A;  1QTS A;  2VJ0 A;  3F10 A;  2NOZ A;  3I0X A;  3EIK A;  1M3Q A;  2MJ7 A;  3SNS A;  3HS9 A;  1R4X A;  1TGH A;  1QN9 A;  3OST A;  5IYB P;  3HS8 A;  1JFI C;  1CDW A;  1VOK A;  4Q11 A;  1QNE A;  1N3C A;  1C9B B;  1YTB A;  2NOF A;  1N3A A;  1QN3 A;  1TBP A;  1PCZ A;  1B9K A;  2LAE A;  4B0A A;  3F0Z A;  2FGT A;  2Z8U A;  1MP9 A;  1NGM A;  1E42 A;  2YH5 A;  3ULX A;  2NOB A;  2O3O A;  2HZS A;  2D0C A;  3DPU A;  4DUL A;  2MZ8 A;  4EJY A;  2D0A A;  1YTF A;  4TPS A;  3OC3 C;  1PZD A;  1QNC A;  2NOI A;  1VTO A;  1KYU A;  4EJZ A;  3ASM A;  3OCI A;  4ROC B;  5IYC P;  1YQL A;  2I5W A;  4ROE B;  3KRM A;  1QNB A;  1LWV A;  1M3H A;  1TBA B;  1QN6 A;  1RM1 A;  2G30 A;  1LWW A;  3OSM A;  3VN5 A;  1KO9 A;  1QNA A;  1VOL B;  1KYF A;  3IH7 A;  1YQM A;  1QN7 A;  3RPJ A;  2IV9 A;  1QN8 A;  1KYD A;  3KTU A;  1QN5 A;  1HU0 A;  4ROD B;  1KY6 A;  1QN4 A;  2NOE A;  1VTL E;  1UT7 A;  1NVP A;  1KY7 A;  2HZM A;  5IYD P;  1QTP A;  1EBM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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