1NVP | Genus

Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	45
sequence length	180
structure length	180
Chain Sequence	SGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 180 atoms

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180 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription/dna
source organism	Homo sapiens
publication title	Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes. pubmed doi rcsb
molecule keywords	5'-D(GPGPGPGPGPGPGPCPTPAPTPAPAPAPAPGP*G)-3'
total genus	45
structure length	180
sequence length	180
ec nomenclature
pdb deposition date	2003-02-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00352	TBP	Transcription factor TFIID (or TATA-binding protein, TBP)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	1nvpA01
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	1nvpA02

1MP9A 3OC3C 1QNEA 3EIKA 4PY5A 1QN3A 1QNBA 3HS9A 5IYBP 2Z8UA 1RM1A 2MJ7A 1QN4A 1E42A 3VN5A 1W80A 2D0BA 1NGMA 1KYFA 4ROCB 1TGHA 5IYDP 1VOLB 5IYCP 1QTSA 2G30A 1B9KA 4ROEB 1TBPA 1QNAA 1JFIC 1KY7A 1KY6A 3ASMA 1PCZA 1VTLE 1QN7A 4B0AA 1QN5A 1QN8A 2D0CA 1QNCA 1D3UA 1YTFA 1KYUA 2IV9A 3HS8A 1R4XA 3H1ZA 4RODB 1CDWA 2VJ0A 1C9BB 1AISA 1QN9A 1KYDA 3OCIA 1QTPA 1VTOA 1YTBA 1VOKA 2D0AA 1NVPA 1TBAB 1NH2A 1QN6A 4WZSD 2IV8A 1PZDA
chains in the Genus database with same CATH superfamily

1WQAA 2DKCA 1J3MA 3CWUA 4TPSA 3EIKA 4PY5A 3HS9A 5IYBP 3KTUA 2Z0FA 1WJWA 5BMPA 4EAJA 1QN4A 5F9CA 2PWWA 2ZFDB 3OH6A 1E42A 2EHBD 1NGMA 4IL8A 3CVTA 2O3OA 2XHIA 3RSMA 1QTSA 2H5AX 1C4GA 3OGDA 2DKDA 3EAYA 3ASMA 3CW7A 2D0CA 3UW2A 3RPJA 1KYUA 1R4XA 4HJHA 1M3QA 2HKPA 3D7QA 3I3WA 3OCIA 5AN4A 1K35A 3N89A 2NOIA 1YQRA 1NVPA 3TDHA 1TBAB 4DULA 1NH2A 2NOEA 1XSZA 2IV8A 1MP9A 5EPCA 3F10A 1T6AA 2V8QA 1QNEA 1JFIC 1QN3A 1N39A 1QNBA 2NOLA 2JHJA 4D7RA 4I8OA 2Y8QA 4EJYA 3I0WA 1C47A 2NOFA 5JN5A 2D0BA 1TGHA 1KYFA 2Y8LA 1VOLB 2LAEA 1PCMX 2I5WA 1MPGA 2R5XA 5KL0A 1TBPA 3OSEA 1QNAA 1QN7A 1YTFA 2OOYA 4B0AA 3ULXA 2HL8A 2FKMX 4WXAA 3H1ZA 3F0ZA 4RODB 4EAGA 4MRQA 3ENOC 1M3HA 3OH9A 1AISA 1C9BB 1QN9A 2NOHA 3PMGA 1TUOA 1P5DX 2JOIA 2DKAA 2D0AA 2QLVA 2NVMA 3SNSA 2QR1A 2NOBA 3DPUA 1QN6A 1P5GX 1RM1A 1KO9A 2QRDA 3OC3C 3PDKA 3CWSA 2FKFA 4BJUA 2Z8UA 2FGTA 1HU0A 4CFFA 3VN5A 1W80A 1YQLA 1PVSA 5IYDP 4D7QA 1M5Q1 2F7LA 2NWVA 5IYCP 3C04A 1B9KA 2V9JA 2JHNA 3OLPA 1KY7A 1LXTA 4Q11A 1PCZA 3TE5A 3CVSA 1VTLE 1YQMA 1LWWA 2MZ8A 1QNCA 1D3UA 2IV9A 3OSMA 2VJ0A 1KYDA 3NA5A 1QTPA 2QREA 1VTOA 1VOKA 1YQKA 1DIZA 1N3AA 4WZSD 1N3CA 3OSTA 1EBMA 1KFQA 3T4NA 2FUVA 5JMVD 1V5SA 2V92A 3DPTA 2MJ7A 4QG5A 3BKQX 4C7PA 1UT7A 3CWAA 1EUVA 1Q9UA 3CWTA 5HSHA 1LWVA 2HZMA 3KRMA 3ENCA 2JPIA 4ROCB 2HZSA 1K2YX 5BMNA 3D4VA 1LWYA 2G30A 2YA3A 4EALA 4ROEB 2OOXA 1KY6A 3I0XA 1QN5A 1QN8A 1JDYA 2H4LX 2HL9A 2QRCA 4EJZA 3IH7A 3HS8A 2NOZA 1CDWA 4EAIA 1YTBA 2YH5A 4EAKA 1VKLA 1FN7A 1UT4A 4WX8A 1KFIA 2NLVA 1UL7A 1PCJX 1PZDA
chains in the Genus database with same CATH topology

4TPSA 3EIKA 4PY5A 3HS9A 5IYBP 3KTUA 1QN4A 1E42A 1NGMA 2O3OA 2XHIA 1QTSA 3ASMA 2D0CA 3RPJA 1KYUA 1R4XA 1M3QA 3OCIA 5AN4A 3N89A 2NOIA 1YQRA 1NVPA 1TBAB 4DULA 1NH2A 2NOEA 2IV8A 1MP9A 3F10A 1QNEA 1QN3A 1N39A 1QNBA 2NOLA 4I8OA 4EJYA 3I0WA 2NOFA 2D0BA 1TGHA 1KYFA 1VOLB 2LAEA 2I5WA 1TBPA 1QNAA 1QN7A 1YTFA 4B0AA 3ULXA 3H1ZA 3F0ZA 4RODB 1C9BB 1M3HA 1AISA 1QN9A 2NOHA 2JOIA 3SNSA 2D0AA 2NOBA 3DPUA 1QN6A 1RM1A 1KO9A 3OC3C 2Z8UA 2FGTA 1HU0A 3VN5A 1W80A 1YQLA 5IYDP 5IYCP 1B9KA 1JFIC 1KY7A 4Q11A 1VTLE 1PCZA 1YQMA 1LWWA 2MZ8A 1QNCA 1D3UA 2IV9A 3OSMA 2VJ0A 1KYDA 1QTPA 1YQKA 1VOKA 1N3AA 4WZSD 1N3CA 3OSTA 1EBMA 3DPTA 2MJ7A 1UT7A 1LWVA 2HZMA 3KRMA 4ROCB 2HZSA 1LWYA 2G30A 4ROEB 1KY6A 3I0XA 1QN5A 1QN8A 4EJZA 3IH7A 3HS8A 2NOZA 1CDWA 1YTBA 2YH5A 1FN7A 1UT4A 1VTOA 1PZDA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1MP9 A;  3OC3 C;  1QNE A;  3EIK A;  4PY5 A;  1QN3 A;  1QNB A;  3HS9 A;  5IYB P;  2Z8U A;  1RM1 A;  2MJ7 A;  1QN4 A;  1E42 A;  3VN5 A;  1W80 A;  2D0B A;  1NGM A;  1KYF A;  4ROC B;  1TGH A;  5IYD P;  1VOL B;  5IYC P;  1QTS A;  2G30 A;  1B9K A;  4ROE B;  1TBP A;  1QNA A;  1JFI C;  1KY7 A;  1KY6 A;  3ASM A;  1PCZ A;  1VTL E;  1QN7 A;  4B0A A;  1QN5 A;  1QN8 A;  2D0C A;  1QNC A;  1D3U A;  1YTF A;  1KYU A;  2IV9 A;  3HS8 A;  1R4X A;  3H1Z A;  4ROD B;  1CDW A;  2VJ0 A;  1C9B B;  1AIS A;  1QN9 A;  1KYD A;  3OCI A;  1QTP A;  1VTO A;  1YTB A;  1VOK A;  2D0A A;  1NVP A;  1TBA B;  1NH2 A;  1QN6 A;  4WZS D;  2IV8 A;  1PZD A; 
#chains in the Genus database with same CATH topology
 1WQA A;  2DKC A;  1J3M A;  3CWU A;  4TPS A;  3EIK A;  4PY5 A;  3HS9 A;  5IYB P;  3KTU A;  2Z0F A;  1WJW A;  5BMP A;  4EAJ A;  1QN4 A;  5F9C A;  2PWW A;  2ZFD B;  3OH6 A;  1E42 A;  2EHB D;  1NGM A;  4IL8 A;  3CVT A;  2O3O A;  2XHI A;  3RSM A;  1QTS A;  2H5A X;  1C4G A;  3OGD A;  2DKD A;  3EAY A;  3ASM A;  3CW7 A;  2D0C A;  3UW2 A;  3RPJ A;  1KYU A;  1R4X A;  4HJH A;  1M3Q A;  2HKP A;  3D7Q A;  3I3W A;  3OCI A;  5AN4 A;  1K35 A;  3N89 A;  2NOI A;  1YQR A;  1NVP A;  3TDH A;  1TBA B;  4DUL A;  1NH2 A;  2NOE A;  1XSZ A;  2IV8 A;  1MP9 A;  5EPC A;  3F10 A;  1T6A A;  2V8Q A;  1QNE A;  1JFI C;  1QN3 A;  1N39 A;  1QNB A;  2NOL A;  2JHJ A;  4D7R A;  4I8O A;  2Y8Q A;  4EJY A;  3I0W A;  1C47 A;  2NOF A;  5JN5 A;  2D0B A;  1TGH A;  1KYF A;  2Y8L A;  1VOL B;  2LAE A;  1PCM X;  2I5W A;  1MPG A;  2R5X A;  5KL0 A;  1TBP A;  3OSE A;  1QNA A;  1QN7 A;  1YTF A;  2OOY A;  4B0A A;  3ULX A;  2HL8 A;  2FKM X;  4WXA A;  3H1Z A;  3F0Z A;  4ROD B;  4EAG A;  4MRQ A;  3ENO C;  1M3H A;  3OH9 A;  1AIS A;  1C9B B;  1QN9 A;  2NOH A;  3PMG A;  1TUO A;  1P5D X;  2JOI A;  2DKA A;  2D0A A;  2QLV A;  2NVM A;  3SNS A;  2QR1 A;  2NOB A;  3DPU A;  1QN6 A;  1P5G X;  1RM1 A;  1KO9 A;  2QRD A;  3OC3 C;  3PDK A;  3CWS A;  2FKF A;  4BJU A;  2Z8U A;  2FGT A;  1HU0 A;  4CFF A;  3VN5 A;  1W80 A;  1YQL A;  1PVS A;  5IYD P;  4D7Q A;  1M5Q 1;  2F7L A;  2NWV A;  5IYC P;  3C04 A;  1B9K A;  2V9J A;  2JHN A;  3OLP A;  1KY7 A;  1LXT A;  4Q11 A;  1PCZ A;  3TE5 A;  3CVS A;  1VTL E;  1YQM A;  1LWW A;  2MZ8 A;  1QNC A;  1D3U A;  2IV9 A;  3OSM A;  2VJ0 A;  1KYD A;  3NA5 A;  1QTP A;  2QRE A;  1VTO A;  1VOK A;  1YQK A;  1DIZ A;  1N3A A;  4WZS D;  1N3C A;  3OST A;  1EBM A;  1KFQ A;  3T4N A;  2FUV A;  5JMV D;  1V5S A;  2V92 A;  3DPT A;  2MJ7 A;  4QG5 A;  3BKQ X;  4C7P A;  1UT7 A;  3CWA A;  1EUV A;  1Q9U A;  3CWT A;  5HSH A;  1LWV A;  2HZM A;  3KRM A;  3ENC A;  2JPI A;  4ROC B;  2HZS A;  1K2Y X;  5BMN A;  3D4V A;  1LWY A;  2G30 A;  2YA3 A;  4EAL A;  4ROE B;  2OOX A;  1KY6 A;  3I0X A;  1QN5 A;  1QN8 A;  1JDY A;  2H4L X;  2HL9 A;  2QRC A;  4EJZ A;  3IH7 A;  3HS8 A;  2NOZ A;  1CDW A;  4EAI A;  1YTB A;  2YH5 A;  4EAK A;  1VKL A;  1FN7 A;  1UT4 A;  4WX8 A;  1KFI A;  2NLV A;  1UL7 A;  1PCJ X;  1PZD A; 
#chains in the Genus database with same CATH homology
 4TPS A;  3EIK A;  4PY5 A;  3HS9 A;  5IYB P;  3KTU A;  1QN4 A;  1E42 A;  1NGM A;  2O3O A;  2XHI A;  1QTS A;  3ASM A;  2D0C A;  3RPJ A;  1KYU A;  1R4X A;  1M3Q A;  3OCI A;  5AN4 A;  3N89 A;  2NOI A;  1YQR A;  1NVP A;  1TBA B;  4DUL A;  1NH2 A;  2NOE A;  2IV8 A;  1MP9 A;  3F10 A;  1QNE A;  1QN3 A;  1N39 A;  1QNB A;  2NOL A;  4I8O A;  4EJY A;  3I0W A;  2NOF A;  2D0B A;  1TGH A;  1KYF A;  1VOL B;  2LAE A;  2I5W A;  1TBP A;  1QNA A;  1QN7 A;  1YTF A;  4B0A A;  3ULX A;  3H1Z A;  3F0Z A;  4ROD B;  1C9B B;  1M3H A;  1AIS A;  1QN9 A;  2NOH A;  2JOI A;  3SNS A;  2D0A A;  2NOB A;  3DPU A;  1QN6 A;  1RM1 A;  1KO9 A;  3OC3 C;  2Z8U A;  2FGT A;  1HU0 A;  3VN5 A;  1W80 A;  1YQL A;  5IYD P;  5IYC P;  1B9K A;  1JFI C;  1KY7 A;  4Q11 A;  1VTL E;  1PCZ A;  1YQM A;  1LWW A;  2MZ8 A;  1QNC A;  1D3U A;  2IV9 A;  3OSM A;  2VJ0 A;  1KYD A;  1QTP A;  1YQK A;  1VOK A;  1N3A A;  4WZS D;  1N3C A;  3OST A;  1EBM A;  3DPT A;  2MJ7 A;  1UT7 A;  1LWV A;  2HZM A;  3KRM A;  4ROC B;  2HZS A;  1LWY A;  2G30 A;  4ROE B;  1KY6 A;  3I0X A;  1QN5 A;  1QN8 A;  4EJZ A;  3IH7 A;  3HS8 A;  2NOZ A;  1CDW A;  1YTB A;  2YH5 A;  1FN7 A;  1UT4 A;  1VTO A;  1PZD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1NVPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations