1QN6 | Genus

Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
sequence length	184
structure length	184
Chain Sequence	SKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 184 atoms

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184 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Tata box-binding protein (tbp)
source organism	Arabidopsis thaliana
publication title	TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution pubmed doi rcsb
molecule keywords	TRANSCRIPTION INITIATION FACTOR TFIID-1
total genus	46
structure length	184
sequence length	184
chains with identical sequence	B
ec nomenclature
pdb deposition date	1999-10-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00352	TBP	Transcription factor TFIID (or TATA-binding protein, TBP)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	1qn6A01
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	1qn6A02

1PCZA 1AISA 1NGMA 2D0CA 1QN6A 1KY6A 1QN7A 1QNCA 5IYDP 4PY5A 1QN3A 1E42A 1CDWA 1QNAA 1VTLE 5IYBP 1JFIC 2D0AA 1TGHA 1RM1A 1C9BB 1NH2A 2G30A 5IYCP 1QN4A 1VTOA 1YTBA 2IV9A 1QNBA 1QTSA 1KY7A 1D3UA 1QTPA 1KYUA 1R4XA 3H1ZA 1TBPA 1QN8A 2MJ7A 1KYDA 1QNEA 3HS8A 3VN5A 1QN5A 3EIKA 3OCIA 1PZDA 1QN9A 1YTFA 1VOLB 2Z8UA 4ROCB 1B9KA 4ROEB 1NVPA 2IV8A 3HS9A 1VOKA 4WZSD 3OC3C 1TBAB 1W80A 1KYFA 4RODB 2VJ0A 4B0AA 1MP9A 3ASMA 2D0BA
chains in the Genus database with same CATH superfamily

1M5Q1 2QRCA 1QNCA 4EALA 5IYDP 4TPSA 2V8QA 2Y8QA 2HL9A 3CVSA 2NOLA 3SNSA 3OLPA 1UT7A 5IYBP 3ENOC 3OSEA 1XSZA 2JHNA 2G30A 2PWWA 5IYCP 2QLVA 5JN5A 3D4VA 1N3CA 2IV9A 3I3WA 2YH5A 2NOBA 1UT4A 3D7QA 3OH9A 5BMPA 1R4XA 5BMNA 1FN7A 2NOZA 3ULXA 2MJ7A 3DPUA 3HS8A 1EUVA 3EIKA 3OCIA 2FKFA 1VOLB 5F9CA 3OSTA 2IV8A 3HS9A 3T4NA 2H4LX 1PVSA 1MP9A 5KL0A 1AISA 2FKMX 4EAKA 1N39A 1QN7A 3RSMA 1J3MA 1QN3A 1E42A 1YQLA 4D7QA 1VTLE 1KO9A 2QR1A 1K2YX 3CVTA 2OOYA 4WX8A 3KRMA 3UW2A 3C04A 4IL8A 2FGTA 2V9JA 2NOIA 2OOXA 4EAJA 2HL8A 1QTPA 1PCMX 4D7RA 1VKLA 1KFIA 3H1ZA 3DPTA 1C4GA 1YTFA 3EAYA 2H5AX 1KFQA 1NVPA 4ROCB 2R5XA 2Y8LA 3OC3C 1W80A 1JDYA 5EPCA 1LWYA 4C7PA 3I0WA 2FUVA 1P5GX 2NWVA 3N89A 3CWAA 2F7LA 2DKCA 1PCZA 1QN6A 2HKPA 4EAIA 4HJHA 5AN4A 4PY5A 3BKQX 1HU0A 2MZ8A 2D0AA 1DIZA 1TGHA 1C9BB 1NH2A 2DKAA 3OSMA 4CFFA 1YTBA 3IH7A 2JOIA 1Q9UA 1QNBA 1V5SA 2JPIA 3CWTA 4QG5A 1N3AA 2JHJA 1D3UA 2HZSA 2I5WA 2NLVA 3NA5A 2NOHA 5HSHA 5JMVD 1PCJX 1QN8A 2NVMA 1QNEA 3TDHA 1UL7A 1YQKA 2Z8UA 4Q11A 1B9KA 4WZSD 3PDKA 3TE5A 1YQRA 1LXTA 3I0XA 2EHBD 1KYFA 1WQAA 4RODB 2D0BA 4EAGA 3OGDA 1NGMA 2D0CA 2DKDA 1KY6A 1M3QA 1LWWA 3CWSA 1K35A 1YQMA 2QREA 1CDWA 3RPJA 1QNAA 3F0ZA 4DULA 1JFIC 1C47A 3CW7A 1RM1A 2HZMA 2LAEA 1QN4A 3KTUA 1VTOA 4MRQA 1QTSA 1KY7A 1EBMA 3OH6A 1WJWA 3F10A 1KYUA 3CWUA 1M3HA 2NOFA 4BJUA 2V92A 3ENCA 1TBPA 2NOEA 2O3OA 1KYDA 4WXAA 3VN5A 2XHIA 2QRDA 1QN5A 3PMGA 1QN9A 1PZDA 2ZFDB 4EJYA 4ROEB 1T6AA 4I8OA 1VOKA 1MPGA 1LWVA 1TBAB 1TUOA 4EJZA 2VJ0A 4B0AA 2YA3A 3ASMA 1P5DX 2Z0FA
chains in the Genus database with same CATH topology

1QNCA 5IYDP 4TPSA 2NOLA 3SNSA 1UT7A 5IYBP 2G30A 5IYCP 2NOBA 1N3CA 2IV9A 2YH5A 1UT4A 1R4XA 1FN7A 2NOZA 3ULXA 2MJ7A 3DPUA 3HS8A 3EIKA 3OCIA 1VOLB 3OSTA 2IV8A 3HS9A 1MP9A 1AISA 1N39A 1QN7A 1QN3A 1E42A 1YQLA 1VTLE 1KO9A 3KRMA 2FGTA 2NOIA 1QTPA 3H1ZA 3DPTA 1YTFA 1NVPA 4ROCB 3OC3C 1W80A 1LWYA 3I0WA 3N89A 1PCZA 1QN6A 2VJ0A 5AN4A 4PY5A 1HU0A 2MZ8A 2D0AA 1TGHA 1C9BB 1NH2A 3OSMA 1YTBA 3IH7A 2JOIA 1QNBA 1N3AA 1D3UA 2HZSA 2I5WA 2NOHA 1QN8A 1QNEA 1YQKA 2Z8UA 4Q11A 1B9KA 4WZSD 1YQRA 3I0XA 1KYFA 4RODB 2D0BA 1NGMA 2D0CA 1M3QA 1KY6A 1LWWA 1YQMA 1CDWA 3RPJA 1QNAA 3F0ZA 4DULA 1JFIC 1RM1A 2HZMA 2LAEA 1QN4A 3KTUA 1VTOA 1QTSA 1KY7A 1EBMA 3F10A 1KYUA 1M3HA 2NOFA 1TBPA 2NOEA 2O3OA 1KYDA 2XHIA 1QN5A 1QN9A 1PZDA 4EJYA 4ROEB 4I8OA 1VOKA 1LWVA 1TBAB 4EJZA 3VN5A 4B0AA 3ASMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1PCZ A;  1AIS A;  1NGM A;  2D0C A;  1QN6 A;  1KY6 A;  1QN7 A;  1QNC A;  5IYD P;  4PY5 A;  1QN3 A;  1E42 A;  1CDW A;  1QNA A;  1VTL E;  5IYB P;  1JFI C;  2D0A A;  1TGH A;  1RM1 A;  1C9B B;  1NH2 A;  2G30 A;  5IYC P;  1QN4 A;  1VTO A;  1YTB A;  2IV9 A;  1QNB A;  1QTS A;  1KY7 A;  1D3U A;  1QTP A;  1KYU A;  1R4X A;  3H1Z A;  1TBP A;  1QN8 A;  2MJ7 A;  1KYD A;  1QNE A;  3HS8 A;  3VN5 A;  1QN5 A;  3EIK A;  3OCI A;  1PZD A;  1QN9 A;  1YTF A;  1VOL B;  2Z8U A;  4ROC B;  1B9K A;  4ROE B;  1NVP A;  2IV8 A;  3HS9 A;  1VOK A;  4WZS D;  3OC3 C;  1TBA B;  1W80 A;  1KYF A;  4ROD B;  2VJ0 A;  4B0A A;  1MP9 A;  3ASM A;  2D0B A; 
#chains in the Genus database with same CATH topology
 1M5Q 1;  2QRC A;  1QNC A;  4EAL A;  5IYD P;  4TPS A;  2V8Q A;  2Y8Q A;  2HL9 A;  3CVS A;  2NOL A;  3SNS A;  3OLP A;  1UT7 A;  5IYB P;  3ENO C;  3OSE A;  1XSZ A;  2JHN A;  2G30 A;  2PWW A;  5IYC P;  2QLV A;  5JN5 A;  3D4V A;  1N3C A;  2IV9 A;  3I3W A;  2YH5 A;  2NOB A;  1UT4 A;  3D7Q A;  3OH9 A;  5BMP A;  1R4X A;  5BMN A;  1FN7 A;  2NOZ A;  3ULX A;  2MJ7 A;  3DPU A;  3HS8 A;  1EUV A;  3EIK A;  3OCI A;  2FKF A;  1VOL B;  5F9C A;  3OST A;  2IV8 A;  3HS9 A;  3T4N A;  2H4L X;  1PVS A;  1MP9 A;  5KL0 A;  1AIS A;  2FKM X;  4EAK A;  1N39 A;  1QN7 A;  3RSM A;  1J3M A;  1QN3 A;  1E42 A;  1YQL A;  4D7Q A;  1VTL E;  1KO9 A;  2QR1 A;  1K2Y X;  3CVT A;  2OOY A;  4WX8 A;  3KRM A;  3UW2 A;  3C04 A;  4IL8 A;  2FGT A;  2V9J A;  2NOI A;  2OOX A;  4EAJ A;  2HL8 A;  1QTP A;  1PCM X;  4D7R A;  1VKL A;  1KFI A;  3H1Z A;  3DPT A;  1C4G A;  1YTF A;  3EAY A;  2H5A X;  1KFQ A;  1NVP A;  4ROC B;  2R5X A;  2Y8L A;  3OC3 C;  1W80 A;  1JDY A;  5EPC A;  1LWY A;  4C7P A;  3I0W A;  2FUV A;  1P5G X;  2NWV A;  3N89 A;  3CWA A;  2F7L A;  2DKC A;  1PCZ A;  1QN6 A;  2HKP A;  4EAI A;  4HJH A;  5AN4 A;  4PY5 A;  3BKQ X;  1HU0 A;  2MZ8 A;  2D0A A;  1DIZ A;  1TGH A;  1C9B B;  1NH2 A;  2DKA A;  3OSM A;  4CFF A;  1YTB A;  3IH7 A;  2JOI A;  1Q9U A;  1QNB A;  1V5S A;  2JPI A;  3CWT A;  4QG5 A;  1N3A A;  2JHJ A;  1D3U A;  2HZS A;  2I5W A;  2NLV A;  3NA5 A;  2NOH A;  5HSH A;  5JMV D;  1PCJ X;  1QN8 A;  2NVM A;  1QNE A;  3TDH A;  1UL7 A;  1YQK A;  2Z8U A;  4Q11 A;  1B9K A;  4WZS D;  3PDK A;  3TE5 A;  1YQR A;  1LXT A;  3I0X A;  2EHB D;  1KYF A;  1WQA A;  4ROD B;  2D0B A;  4EAG A;  3OGD A;  1NGM A;  2D0C A;  2DKD A;  1KY6 A;  1M3Q A;  1LWW A;  3CWS A;  1K35 A;  1YQM A;  2QRE A;  1CDW A;  3RPJ A;  1QNA A;  3F0Z A;  4DUL A;  1JFI C;  1C47 A;  3CW7 A;  1RM1 A;  2HZM A;  2LAE A;  1QN4 A;  3KTU A;  1VTO A;  4MRQ A;  1QTS A;  1KY7 A;  1EBM A;  3OH6 A;  1WJW A;  3F10 A;  1KYU A;  3CWU A;  1M3H A;  2NOF A;  4BJU A;  2V92 A;  3ENC A;  1TBP A;  2NOE A;  2O3O A;  1KYD A;  4WXA A;  3VN5 A;  2XHI A;  2QRD A;  1QN5 A;  3PMG A;  1QN9 A;  1PZD A;  2ZFD B;  4EJY A;  4ROE B;  1T6A A;  4I8O A;  1VOK A;  1MPG A;  1LWV A;  1TBA B;  1TUO A;  4EJZ A;  2VJ0 A;  4B0A A;  2YA3 A;  3ASM A;  1P5D X;  2Z0F A; 
#chains in the Genus database with same CATH homology
 1QNC A;  5IYD P;  4TPS A;  2NOL A;  3SNS A;  1UT7 A;  5IYB P;  2G30 A;  5IYC P;  2NOB A;  1N3C A;  2IV9 A;  2YH5 A;  1UT4 A;  1R4X A;  1FN7 A;  2NOZ A;  3ULX A;  2MJ7 A;  3DPU A;  3HS8 A;  3EIK A;  3OCI A;  1VOL B;  3OST A;  2IV8 A;  3HS9 A;  1MP9 A;  1AIS A;  1N39 A;  1QN7 A;  1QN3 A;  1E42 A;  1YQL A;  1VTL E;  1KO9 A;  3KRM A;  2FGT A;  2NOI A;  1QTP A;  3H1Z A;  3DPT A;  1YTF A;  1NVP A;  4ROC B;  3OC3 C;  1W80 A;  1LWY A;  3I0W A;  3N89 A;  1PCZ A;  1QN6 A;  2VJ0 A;  5AN4 A;  4PY5 A;  1HU0 A;  2MZ8 A;  2D0A A;  1TGH A;  1C9B B;  1NH2 A;  3OSM A;  1YTB A;  3IH7 A;  2JOI A;  1QNB A;  1N3A A;  1D3U A;  2HZS A;  2I5W A;  2NOH A;  1QN8 A;  1QNE A;  1YQK A;  2Z8U A;  4Q11 A;  1B9K A;  4WZS D;  1YQR A;  3I0X A;  1KYF A;  4ROD B;  2D0B A;  1NGM A;  2D0C A;  1M3Q A;  1KY6 A;  1LWW A;  1YQM A;  1CDW A;  3RPJ A;  1QNA A;  3F0Z A;  4DUL A;  1JFI C;  1RM1 A;  2HZM A;  2LAE A;  1QN4 A;  3KTU A;  1VTO A;  1QTS A;  1KY7 A;  1EBM A;  3F10 A;  1KYU A;  1M3H A;  2NOF A;  1TBP A;  2NOE A;  2O3O A;  1KYD A;  2XHI A;  1QN5 A;  1QN9 A;  1PZD A;  4EJY A;  4ROE B;  4I8O A;  1VOK A;  1LWV A;  1TBA B;  4EJZ A;  3VN5 A;  4B0A A;  3ASM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1QN6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations