1QN8 | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	183
structure length	183
Chain Sequence	KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 183 atoms

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183 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Tata box-binding protein (tbp)
source organism	Arabidopsis thaliana
publication title	TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution pubmed doi rcsb
molecule keywords	TRANSCRIPTION INITIATION FACTOR TFIID-1
total genus	49
structure length	183
sequence length	183
chains with identical sequence	B
ec nomenclature
pdb deposition date	1999-10-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00352	TBP	Transcription factor TFIID (or TATA-binding protein, TBP)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	1qn8A01
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	1qn8A02

2IV9A 3HS8A 4ROCB 4ROEB 1JFIC 1QTSA 4B0AA 1QNBA 3EIKA 1E42A 3OC3C 1QN9A 1B9KA 2G30A 1QTPA 1R4XA 1KYUA 3OCIA 2MJ7A 1QN4A 1VTOA 2D0CA 1YTBA 1NVPA 1QN8A 3VN5A 3HS9A 4RODB 1QN3A 1QNEA 1QN7A 1AISA 2Z8UA 1MP9A 1KYFA 2VJ0A 3H1ZA 1NH2A 1NGMA 1QN6A 1QNCA 5IYDP 3ASMA 1KY6A 1RM1A 1YTFA 1QN5A 1PZDA 4WZSD 1D3UA 1C9BB 1VOLB 1KYDA 1VTLE 1KY7A 1VOKA 1PCZA 2D0AA 1TGHA 1TBAB 5IYBP 1QNAA 1W80A 4PY5A 5IYCP 2IV8A 1CDWA 1TBPA 2D0BA
chains in the Genus database with same CATH superfamily

4B0AA 1QNBA 3EIKA 2OOYA 2QREA 2G30A 3OCIA 2FGTA 4EAGA 2NOZA 4D7QA 2NOEA 2DKCA 1QN4A 3OGDA 2Z0FA 1HU0A 1LWWA 2NOLA 2YH5A 3HS9A 1DIZA 4WXAA 1FN7A 1QN3A 4EAJA 2HZMA 4CFFA 5IYDP 2H5AX 2HL8A 1NGMA 4QG5A 2HKPA 2O3OA 1TUOA 1D3UA 3EAYA 2OOXA 3CWAA 3I0WA 3OLPA 1LWYA 1EUVA 1C47A 3BKQX 4BJUA 1TBAB 3DPTA 1TGHA 2QRDA 1Q9UA 1VKLA 2DKAA 2IV8A 5IYCP 3CWUA 5HSHA 2JHNA 3I0XA 1JDYA 2D0BA 4TPSA 1VTOA 3HS8A 4ROCB 4ROEB 3D4VA 1YQMA 2H4LX 1QTSA 5AN4A 1E42A 3KRMA 2Y8LA 1QN9A 2QRCA 1EBMA 5JMVD 1N3CA 2QLVA 3RSMA 4D7RA 3PMGA 2D0CA 3IH7A 1YQKA 1PCMX 3ENCA 3RPJA 3CVTA 2XHIA 2NWVA 3PDKA 1MP9A 1QN6A 1M5Q1 5BMPA 1N39A 1WJWA 2NLVA 3CW7A 1PZDA 2YA3A 3DPUA 1XSZA 1PVSA 3T4NA 2NOHA 2F7LA 4PY5A 1J3MA 1W80A 1WQAA 3ULXA 2JHJA 5KL0A 1C4GA 2IV9A 2ZFDB 1JFIC 1YQRA 1LXTA 3OC3C 1B9KA 4WX8A 1YQLA 2NOBA 1UL7A 1QTPA 2NOIA 1M3QA 3TE5A 2MJ7A 4C7PA 2NOFA 2FKFA 1KO9A 3F10A 1YTBA 1NVPA 2FKMX 3VN5A 4RODB 3KTUA 1UT7A 2QR1A 2Z8UA 1KYFA 4HJHA 5JN5A 1NH2A 1V5SA 3OSTA 1PCJX 4EAKA 3ASMA 1KY6A 4MRQA 4Q11A 3OH9A 1RM1A 1N3AA 1QN5A 1C9BB 4I8OA 1VOLB 2V92A 2HL9A 5BMNA 2MZ8A 1KFIA 2EHBD 4EALA 1UT4A 3F0ZA 3CWSA 2R5XA 1LWVA 1TBPA 4EAIA 3NA5A 3CWTA 1T6AA 2FUVA 4DULA 1K2YX 3SNSA 2JPIA 1R4XA 3UW2A 1KYUA 1M3HA 4EJYA 1P5GX 4IL8A 3OSMA 2DKDA 2Y8QA 1QN8A 1QNEA 3OSEA 1QN7A 3D7QA 1AISA 5F9CA 1MPGA 2VJ0A 3H1ZA 3CVSA 1QNCA 1KFQA 2V8QA 3I3WA 3TDHA 1YTFA 4WZSD 2V9JA 4EJZA 2HZSA 2PWWA 1P5DX 1K35A 2NVMA 1KYDA 1VTLE 1KY7A 1VOKA 1PCZA 2D0AA 1QNAA 5IYBP 3C04A 3ENOC 3OH6A 1CDWA 3N89A 2I5WA 2LAEA 5EPCA 2JOIA
chains in the Genus database with same CATH topology

4B0AA 1QNBA 3EIKA 2G30A 3OCIA 2FGTA 2NOZA 2NOEA 1QN4A 1LWWA 1HU0A 2NOLA 2YH5A 3HS9A 1FN7A 1QN3A 2HZMA 5IYDP 2O3OA 1D3UA 3I0WA 1LWYA 1TGHA 1TBAB 3DPTA 5IYCP 2IV8A 3I0XA 1VTOA 4TPSA 2D0BA 1YQMA 3HS8A 4ROCB 4ROEB 1QTSA 5AN4A 1E42A 3KRMA 1QN9A 1EBMA 1N3CA 2D0CA 3IH7A 1YQKA 3RPJA 2XHIA 1MP9A 1QN6A 1N39A 1PZDA 3DPUA 2NOHA 4PY5A 3ULXA 1W80A 2IV9A 1JFIC 1YQRA 3OC3C 1B9KA 1YQLA 2NOBA 1QTPA 2NOIA 1M3QA 2MJ7A 2NOFA 3F10A 1KO9A 1YTBA 1NVPA 3VN5A 4RODB 3KTUA 1UT7A 2Z8UA 1NH2A 1KYFA 1NGMA 3OSTA 3ASMA 1KY6A 4Q11A 1RM1A 1N3AA 1QN5A 1C9BB 4I8OA 1VOLB 2MZ8A 1UT4A 3F0ZA 1LWVA 1TBPA 4DULA 3SNSA 1R4XA 1KYUA 1M3HA 4EJYA 3OSMA 1QN8A 1QNEA 1QN7A 1AISA 2VJ0A 3H1ZA 1QNCA 1YTFA 4WZSD 4EJZA 2HZSA 1KYDA 1VTLE 1KY7A 1VOKA 1PCZA 2D0AA 1QNAA 5IYBP 1CDWA 2I5WA 3N89A 2LAEA 2JOIA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2IV9 A;  3HS8 A;  4ROC B;  4ROE B;  1JFI C;  1QTS A;  4B0A A;  1QNB A;  3EIK A;  1E42 A;  3OC3 C;  1QN9 A;  1B9K A;  2G30 A;  1QTP A;  1R4X A;  1KYU A;  3OCI A;  2MJ7 A;  1QN4 A;  1VTO A;  2D0C A;  1YTB A;  1NVP A;  1QN8 A;  3VN5 A;  3HS9 A;  4ROD B;  1QN3 A;  1QNE A;  1QN7 A;  1AIS A;  2Z8U A;  1MP9 A;  1KYF A;  2VJ0 A;  3H1Z A;  1NH2 A;  1NGM A;  1QN6 A;  1QNC A;  5IYD P;  3ASM A;  1KY6 A;  1RM1 A;  1YTF A;  1QN5 A;  1PZD A;  4WZS D;  1D3U A;  1C9B B;  1VOL B;  1KYD A;  1VTL E;  1KY7 A;  1VOK A;  1PCZ A;  2D0A A;  1TGH A;  1TBA B;  5IYB P;  1QNA A;  1W80 A;  4PY5 A;  5IYC P;  2IV8 A;  1CDW A;  1TBP A;  2D0B A; 
#chains in the Genus database with same CATH topology
 4B0A A;  1QNB A;  3EIK A;  2OOY A;  2QRE A;  2G30 A;  3OCI A;  2FGT A;  4EAG A;  2NOZ A;  4D7Q A;  2NOE A;  2DKC A;  1QN4 A;  3OGD A;  2Z0F A;  1HU0 A;  1LWW A;  2NOL A;  2YH5 A;  3HS9 A;  1DIZ A;  4WXA A;  1FN7 A;  1QN3 A;  4EAJ A;  2HZM A;  4CFF A;  5IYD P;  2H5A X;  2HL8 A;  1NGM A;  4QG5 A;  2HKP A;  2O3O A;  1TUO A;  1D3U A;  3EAY A;  2OOX A;  3CWA A;  3I0W A;  3OLP A;  1LWY A;  1EUV A;  1C47 A;  3BKQ X;  4BJU A;  1TBA B;  3DPT A;  1TGH A;  2QRD A;  1Q9U A;  1VKL A;  2DKA A;  2IV8 A;  5IYC P;  3CWU A;  5HSH A;  2JHN A;  3I0X A;  1JDY A;  2D0B A;  4TPS A;  1VTO A;  3HS8 A;  4ROC B;  4ROE B;  3D4V A;  1YQM A;  2H4L X;  1QTS A;  5AN4 A;  1E42 A;  3KRM A;  2Y8L A;  1QN9 A;  2QRC A;  1EBM A;  5JMV D;  1N3C A;  2QLV A;  3RSM A;  4D7R A;  3PMG A;  2D0C A;  3IH7 A;  1YQK A;  1PCM X;  3ENC A;  3RPJ A;  3CVT A;  2XHI A;  2NWV A;  3PDK A;  1MP9 A;  1QN6 A;  1M5Q 1;  5BMP A;  1N39 A;  1WJW A;  2NLV A;  3CW7 A;  1PZD A;  2YA3 A;  3DPU A;  1XSZ A;  1PVS A;  3T4N A;  2NOH A;  2F7L A;  4PY5 A;  1J3M A;  1W80 A;  1WQA A;  3ULX A;  2JHJ A;  5KL0 A;  1C4G A;  2IV9 A;  2ZFD B;  1JFI C;  1YQR A;  1LXT A;  3OC3 C;  1B9K A;  4WX8 A;  1YQL A;  2NOB A;  1UL7 A;  1QTP A;  2NOI A;  1M3Q A;  3TE5 A;  2MJ7 A;  4C7P A;  2NOF A;  2FKF A;  1KO9 A;  3F10 A;  1YTB A;  1NVP A;  2FKM X;  3VN5 A;  4ROD B;  3KTU A;  1UT7 A;  2QR1 A;  2Z8U A;  1KYF A;  4HJH A;  5JN5 A;  1NH2 A;  1V5S A;  3OST A;  1PCJ X;  4EAK A;  3ASM A;  1KY6 A;  4MRQ A;  4Q11 A;  3OH9 A;  1RM1 A;  1N3A A;  1QN5 A;  1C9B B;  4I8O A;  1VOL B;  2V92 A;  2HL9 A;  5BMN A;  2MZ8 A;  1KFI A;  2EHB D;  4EAL A;  1UT4 A;  3F0Z A;  3CWS A;  2R5X A;  1LWV A;  1TBP A;  4EAI A;  3NA5 A;  3CWT A;  1T6A A;  2FUV A;  4DUL A;  1K2Y X;  3SNS A;  2JPI A;  1R4X A;  3UW2 A;  1KYU A;  1M3H A;  4EJY A;  1P5G X;  4IL8 A;  3OSM A;  2DKD A;  2Y8Q A;  1QN8 A;  1QNE A;  3OSE A;  1QN7 A;  3D7Q A;  1AIS A;  5F9C A;  1MPG A;  2VJ0 A;  3H1Z A;  3CVS A;  1QNC A;  1KFQ A;  2V8Q A;  3I3W A;  3TDH A;  1YTF A;  4WZS D;  2V9J A;  4EJZ A;  2HZS A;  2PWW A;  1P5D X;  1K35 A;  2NVM A;  1KYD A;  1VTL E;  1KY7 A;  1VOK A;  1PCZ A;  2D0A A;  1QNA A;  5IYB P;  3C04 A;  3ENO C;  3OH6 A;  1CDW A;  3N89 A;  2I5W A;  2LAE A;  5EPC A;  2JOI A; 
#chains in the Genus database with same CATH homology
 4B0A A;  1QNB A;  3EIK A;  2G30 A;  3OCI A;  2FGT A;  2NOZ A;  2NOE A;  1QN4 A;  1LWW A;  1HU0 A;  2NOL A;  2YH5 A;  3HS9 A;  1FN7 A;  1QN3 A;  2HZM A;  5IYD P;  2O3O A;  1D3U A;  3I0W A;  1LWY A;  1TGH A;  1TBA B;  3DPT A;  5IYC P;  2IV8 A;  3I0X A;  1VTO A;  4TPS A;  2D0B A;  1YQM A;  3HS8 A;  4ROC B;  4ROE B;  1QTS A;  5AN4 A;  1E42 A;  3KRM A;  1QN9 A;  1EBM A;  1N3C A;  2D0C A;  3IH7 A;  1YQK A;  3RPJ A;  2XHI A;  1MP9 A;  1QN6 A;  1N39 A;  1PZD A;  3DPU A;  2NOH A;  4PY5 A;  3ULX A;  1W80 A;  2IV9 A;  1JFI C;  1YQR A;  3OC3 C;  1B9K A;  1YQL A;  2NOB A;  1QTP A;  2NOI A;  1M3Q A;  2MJ7 A;  2NOF A;  3F10 A;  1KO9 A;  1YTB A;  1NVP A;  3VN5 A;  4ROD B;  3KTU A;  1UT7 A;  2Z8U A;  1NH2 A;  1KYF A;  1NGM A;  3OST A;  3ASM A;  1KY6 A;  4Q11 A;  1RM1 A;  1N3A A;  1QN5 A;  1C9B B;  4I8O A;  1VOL B;  2MZ8 A;  1UT4 A;  3F0Z A;  1LWV A;  1TBP A;  4DUL A;  3SNS A;  1R4X A;  1KYU A;  1M3H A;  4EJY A;  3OSM A;  1QN8 A;  1QNE A;  1QN7 A;  1AIS A;  2VJ0 A;  3H1Z A;  1QNC A;  1YTF A;  4WZS D;  4EJZ A;  2HZS A;  1KYD A;  1VTL E;  1KY7 A;  1VOK A;  1PCZ A;  2D0A A;  1QNA A;  5IYB P;  1CDW A;  2I5W A;  3N89 A;  2LAE A;  2JOI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1QN8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations