1QNC | Genus

Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	47
sequence length	183
structure length	183
Chain Sequence	KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Tata box-binding protein (tbp)
source organism	Arabidopsis thaliana
publication title	TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution pubmed doi rcsb
molecule keywords	TRANSCRIPTION INITIATION FACTOR TFIID-1
total genus	47
structure length	183
sequence length	183
chains with identical sequence	B
ec nomenclature
pdb deposition date	1999-10-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00352	TBP	Transcription factor TFIID (or TATA-binding protein, TBP)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	1qncA01
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	1qncA02

1PCZA 3ASMA 1NVPA 1W80A 1KY7A 1TGHA 3OCIA 2D0AA 1KY6A 1QNEA 1QN6A 3HS8A 1KYDA 2D0BA 1AISA 1QN9A 1KYUA 1B9KA 2VJ0A 5IYDP 3H1ZA 1QN5A 1TBAB 1E42A 1VOKA 2D0CA 1VTLE 1QN4A 3HS9A 1QN3A 2IV9A 5IYBP 5IYCP 4PY5A 4ROCB 2Z8UA 1KYFA 1JFIC 2IV8A 4RODB 4ROEB 3VN5A 4WZSD 1VTOA 1C9BB 1VOLB 1D3UA 1CDWA 1QN8A 3OC3C 1R4XA 1YTFA 1YTBA 1MP9A 2MJ7A 3EIKA 1RM1A 1QN7A 1QNBA 1QTSA 1NH2A 1QNAA 2G30A 1TBPA 1QNCA 4B0AA 1NGMA 1QTPA 1PZDA
chains in the Genus database with same CATH superfamily

3ASMA 5HSHA 1UL7A 2YA3A 1W80A 1KY7A 1YQRA 5JMVD 2EHBD 2NLVA 3OSEA 1KY6A 2D0BA 2OOYA 5F9CA 1QN9A 2FUVA 1QN5A 1T6AA 4C7PA 1VOKA 5EPCA 2R5XA 5AN4A 1QN3A 1VKLA 4TPSA 2V8QA 2IV8A 4RODB 2H5AX 2ZFDB 3NA5A 1D3UA 2NOEA 1LWVA 3CVSA 5KL0A 3DPUA 1UT4A 3D7QA 2I5WA 3EIKA 1YQLA 1QTSA 3RSMA 1NH2A 1QNAA 2G30A 1P5GX 1NGMA 2DKAA 3OLPA 1PCZA 1UT7A 1NVPA 4EJZA 3CWAA 4EAGA 1HU0A 1C47A 2Y8LA 3PMGA 1KFIA 2Z0FA 2JOIA 4I8OA 1M3HA 1AISA 3CW7A 3PDKA 3CWTA 1M3QA 4D7QA 3H1ZA 1E42A 3ENCA 2D0CA 2HL8A 2JHJA 1K2YX 1TUOA 2DKDA 5IYCP 2XHIA 3SNSA 1LWYA 4QG5A 1C4GA 1WJWA 2JPIA 2DKCA 2NOIA 1JFIC 2NOLA 1VTOA 3VN5A 2HKPA 1VOLB 1LXTA 1P5DX 2FKMX 3OSMA 4D7RA 3CWUA 1FN7A 1QN8A 2NOZA 1R4XA 2QRDA 1MPGA 1PCMX 1EBMA 1QN7A 3BKQX 1QNBA 4BJUA 1DIZA 4EJYA 4DULA 1PVSA 4EAIA 3N89A 1QTPA 1PZDA 2VJ0A 3F10A 1N3AA 1XSZA 5BMNA 2NOFA 3I3WA 2NOBA 1TGHA 3C04A 3F0ZA 2D0AA 2F7LA 1QN6A 1KYDA 2V9JA 2FGTA 2O3OA 5IYDP 1YQKA 1Q9UA 1QN4A 1K35A 3HS9A 4MRQA 2OOXA 2IV9A 4PY5A 4ROCB 3IH7A 1M5Q1 1KFQA 2HL9A 1KYFA 2LAEA 4ROEB 4WZSD 2NOHA 5JN5A 1YTFA 3CVTA 1YTBA 3UW2A 3KTUA 3OH6A 3EAYA 4WXAA 2QLVA 2QR1A 3OH9A 4B0AA 1QNCA 1KO9A 2FKFA 2QRCA 3OSTA 5BMPA 1J3MA 3RPJA 4HJHA 3OCIA 4WX8A 3D4VA 3DPTA 1LWWA 1N3CA 2NWVA 1QNEA 3HS8A 4EAKA 3T4NA 1KYUA 1B9KA 2PWWA 1N39A 2V92A 1EUVA 1TBAB 4EALA 1PCJX 2HZMA 2H4LX 1VTLE 3TDHA 2MZ8A 2NVMA 3TE5A 5IYBP 1WQAA 3ULXA 4CFFA 2Z8UA 3KRMA 3ENOC 1C9BB 1V5SA 1JDYA 3CWSA 2YH5A 4Q11A 4EAJA 2Y8QA 1YQMA 1CDWA 3I0XA 3OC3C 2JHNA 2HZSA 1MP9A 2MJ7A 1RM1A 2QREA 3OGDA 3I0WA 1TBPA 4IL8A
chains in the Genus database with same CATH topology

3ASMA 1W80A 1KY7A 1YQRA 1KY6A 2D0BA 1QN9A 1QN5A 1VOKA 5AN4A 1QN3A 4TPSA 2IV8A 4RODB 1D3UA 2NOEA 1LWVA 3DPUA 1UT4A 2I5WA 3EIKA 1YQLA 1QTSA 1NH2A 1QNAA 2G30A 1NGMA 1PCZA 1UT7A 1NVPA 4EJZA 1HU0A 2JOIA 4I8OA 1M3HA 1AISA 1M3QA 3H1ZA 1E42A 2D0CA 5IYCP 2XHIA 3SNSA 1LWYA 2NOIA 1JFIC 2NOLA 1VTOA 3VN5A 1VOLB 3OSMA 1FN7A 1QN8A 2NOZA 1R4XA 1EBMA 1QN7A 1QNBA 4EJYA 4DULA 3N89A 1QTPA 2VJ0A 1PZDA 3F10A 1N3AA 2NOFA 2NOBA 1TGHA 3F0ZA 2D0AA 1QN6A 1KYDA 2FGTA 2O3OA 5IYDP 1YQKA 1QN4A 3HS9A 2IV9A 4PY5A 4ROCB 3IH7A 1KYFA 2LAEA 4ROEB 4WZSD 2NOHA 1YTFA 1YTBA 3KTUA 1QNCA 4B0AA 1KO9A 3OSTA 3RPJA 3OCIA 3DPTA 1LWWA 1N3CA 1QNEA 3HS8A 1KYUA 1B9KA 1N39A 1TBAB 2HZMA 1VTLE 2MZ8A 5IYBP 3ULXA 2Z8UA 3KRMA 1C9BB 2YH5A 4Q11A 1YQMA 1CDWA 3I0XA 3OC3C 2HZSA 1MP9A 2MJ7A 1RM1A 3I0WA 1TBPA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1PCZ A;  3ASM A;  1NVP A;  1W80 A;  1KY7 A;  1TGH A;  3OCI A;  2D0A A;  1KY6 A;  1QNE A;  1QN6 A;  3HS8 A;  1KYD A;  2D0B A;  1AIS A;  1QN9 A;  1KYU A;  1B9K A;  2VJ0 A;  5IYD P;  3H1Z A;  1QN5 A;  1TBA B;  1E42 A;  1VOK A;  2D0C A;  1VTL E;  1QN4 A;  3HS9 A;  1QN3 A;  2IV9 A;  5IYB P;  5IYC P;  4PY5 A;  4ROC B;  2Z8U A;  1KYF A;  1JFI C;  2IV8 A;  4ROD B;  4ROE B;  3VN5 A;  4WZS D;  1VTO A;  1C9B B;  1VOL B;  1D3U A;  1CDW A;  1QN8 A;  3OC3 C;  1R4X A;  1YTF A;  1YTB A;  1MP9 A;  2MJ7 A;  3EIK A;  1RM1 A;  1QN7 A;  1QNB A;  1QTS A;  1NH2 A;  1QNA A;  2G30 A;  1TBP A;  1QNC A;  4B0A A;  1NGM A;  1QTP A;  1PZD A; 
#chains in the Genus database with same CATH topology
 3ASM A;  5HSH A;  1UL7 A;  2YA3 A;  1W80 A;  1KY7 A;  1YQR A;  5JMV D;  2EHB D;  2NLV A;  3OSE A;  1KY6 A;  2D0B A;  2OOY A;  5F9C A;  1QN9 A;  2FUV A;  1QN5 A;  1T6A A;  4C7P A;  1VOK A;  5EPC A;  2R5X A;  5AN4 A;  1QN3 A;  1VKL A;  4TPS A;  2V8Q A;  2IV8 A;  4ROD B;  2H5A X;  2ZFD B;  3NA5 A;  1D3U A;  2NOE A;  1LWV A;  3CVS A;  5KL0 A;  3DPU A;  1UT4 A;  3D7Q A;  2I5W A;  3EIK A;  1YQL A;  1QTS A;  3RSM A;  1NH2 A;  1QNA A;  2G30 A;  1P5G X;  1NGM A;  2DKA A;  3OLP A;  1PCZ A;  1UT7 A;  1NVP A;  4EJZ A;  3CWA A;  4EAG A;  1HU0 A;  1C47 A;  2Y8L A;  3PMG A;  1KFI A;  2Z0F A;  2JOI A;  4I8O A;  1M3H A;  1AIS A;  3CW7 A;  3PDK A;  3CWT A;  1M3Q A;  4D7Q A;  3H1Z A;  1E42 A;  3ENC A;  2D0C A;  2HL8 A;  2JHJ A;  1K2Y X;  1TUO A;  2DKD A;  5IYC P;  2XHI A;  3SNS A;  1LWY A;  4QG5 A;  1C4G A;  1WJW A;  2JPI A;  2DKC A;  2NOI A;  1JFI C;  2NOL A;  1VTO A;  3VN5 A;  2HKP A;  1VOL B;  1LXT A;  1P5D X;  2FKM X;  3OSM A;  4D7R A;  3CWU A;  1FN7 A;  1QN8 A;  2NOZ A;  1R4X A;  2QRD A;  1MPG A;  1PCM X;  1EBM A;  1QN7 A;  3BKQ X;  1QNB A;  4BJU A;  1DIZ A;  4EJY A;  4DUL A;  1PVS A;  4EAI A;  3N89 A;  1QTP A;  1PZD A;  2VJ0 A;  3F10 A;  1N3A A;  1XSZ A;  5BMN A;  2NOF A;  3I3W A;  2NOB A;  1TGH A;  3C04 A;  3F0Z A;  2D0A A;  2F7L A;  1QN6 A;  1KYD A;  2V9J A;  2FGT A;  2O3O A;  5IYD P;  1YQK A;  1Q9U A;  1QN4 A;  1K35 A;  3HS9 A;  4MRQ A;  2OOX A;  2IV9 A;  4PY5 A;  4ROC B;  3IH7 A;  1M5Q 1;  1KFQ A;  2HL9 A;  1KYF A;  2LAE A;  4ROE B;  4WZS D;  2NOH A;  5JN5 A;  1YTF A;  3CVT A;  1YTB A;  3UW2 A;  3KTU A;  3OH6 A;  3EAY A;  4WXA A;  2QLV A;  2QR1 A;  3OH9 A;  4B0A A;  1QNC A;  1KO9 A;  2FKF A;  2QRC A;  3OST A;  5BMP A;  1J3M A;  3RPJ A;  4HJH A;  3OCI A;  4WX8 A;  3D4V A;  3DPT A;  1LWW A;  1N3C A;  2NWV A;  1QNE A;  3HS8 A;  4EAK A;  3T4N A;  1KYU A;  1B9K A;  2PWW A;  1N39 A;  2V92 A;  1EUV A;  1TBA B;  4EAL A;  1PCJ X;  2HZM A;  2H4L X;  1VTL E;  3TDH A;  2MZ8 A;  2NVM A;  3TE5 A;  5IYB P;  1WQA A;  3ULX A;  4CFF A;  2Z8U A;  3KRM A;  3ENO C;  1C9B B;  1V5S A;  1JDY A;  3CWS A;  2YH5 A;  4Q11 A;  4EAJ A;  2Y8Q A;  1YQM A;  1CDW A;  3I0X A;  3OC3 C;  2JHN A;  2HZS A;  1MP9 A;  2MJ7 A;  1RM1 A;  2QRE A;  3OGD A;  3I0W A;  1TBP A;  4IL8 A; 
#chains in the Genus database with same CATH homology
 3ASM A;  1W80 A;  1KY7 A;  1YQR A;  1KY6 A;  2D0B A;  1QN9 A;  1QN5 A;  1VOK A;  5AN4 A;  1QN3 A;  4TPS A;  2IV8 A;  4ROD B;  1D3U A;  2NOE A;  1LWV A;  3DPU A;  1UT4 A;  2I5W A;  3EIK A;  1YQL A;  1QTS A;  1NH2 A;  1QNA A;  2G30 A;  1NGM A;  1PCZ A;  1UT7 A;  1NVP A;  4EJZ A;  1HU0 A;  2JOI A;  4I8O A;  1M3H A;  1AIS A;  1M3Q A;  3H1Z A;  1E42 A;  2D0C A;  5IYC P;  2XHI A;  3SNS A;  1LWY A;  2NOI A;  1JFI C;  2NOL A;  1VTO A;  3VN5 A;  1VOL B;  3OSM A;  1FN7 A;  1QN8 A;  2NOZ A;  1R4X A;  1EBM A;  1QN7 A;  1QNB A;  4EJY A;  4DUL A;  3N89 A;  1QTP A;  2VJ0 A;  1PZD A;  3F10 A;  1N3A A;  2NOF A;  2NOB A;  1TGH A;  3F0Z A;  2D0A A;  1QN6 A;  1KYD A;  2FGT A;  2O3O A;  5IYD P;  1YQK A;  1QN4 A;  3HS9 A;  2IV9 A;  4PY5 A;  4ROC B;  3IH7 A;  1KYF A;  2LAE A;  4ROE B;  4WZS D;  2NOH A;  1YTF A;  1YTB A;  3KTU A;  1QNC A;  4B0A A;  1KO9 A;  3OST A;  3RPJ A;  3OCI A;  3DPT A;  1LWW A;  1N3C A;  1QNE A;  3HS8 A;  1KYU A;  1B9K A;  1N39 A;  1TBA B;  2HZM A;  1VTL E;  2MZ8 A;  5IYB P;  3ULX A;  2Z8U A;  3KRM A;  1C9B B;  2YH5 A;  4Q11 A;  1YQM A;  1CDW A;  3I0X A;  3OC3 C;  2HZS A;  1MP9 A;  2MJ7 A;  1RM1 A;  3I0W A;  1TBP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1QNCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations