1TBAB

Solution structure of a tbp-tafii230 complex: protein mimicry of the minor groove surface of the tata box unwound by tbp, nmr, 25 structures
Total Genus 37
2040608010012014016005101520253035
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
180
structure length
180
Chain Sequence
SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI2 (96-99)TVIII1 (89-92)S6 (153-165)S3 (101-106)AH3 (172-179)TIV1 (106-109)S4 (111-116)TI1 (95-98)S2 (92-94)S5 (120-126)TI3 (116-119)AH2 (129-146)AH1 (82-88)S1 (66-75)Updating...
connected with : NaN
molecule tags Complex (transcription factors)
source organism Drosophila melanogaster
publication title Solution structure of a TBP-TAF(II)230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP.
pubmed doi rcsb
molecule keywords TRANSCRIPTION INITIATION FACTOR IID 230K CHAIN
total genus 37
structure length 180
sequence length 180
ec nomenclature
pdb deposition date 1998-08-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1tbaB01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1tbaB02
1NVPA 1YTFA 1QN8A 4B0AA 1JFIC 1VTLE 4ROCB 1R4XA 1KY7A 3EIKA 3H1ZA 1AISA 1QTSA 1E42A 1TBPA 1QNBA 3VN5A 1C9BB 1KYDA 3OC3C 1D3UA 5IYCP 1QNAA 3HS9A 1QN3A 1QTPA 2IV9A 3OCIA 1VOLB 5IYDP 1B9KA 2Z8UA 1QN5A 1VOKA 1VTOA 1CDWA 2VJ0A 1QN9A 1QNEA 1NH2A 1TGHA 2D0BA 1PCZA 1NGMA 2IV8A 3HS8A 3ASMA 1QNCA 1YTBA 1KY6A 1RM1A 4WZSD 1QN7A 2G30A 2D0AA 1TBAB 1PZDA 2D0CA 1W80A 4ROEB 4RODB 1QN4A 1KYUA 5IYBP 1QN6A 4PY5A 2MJ7A 1KYFA 1MP9A
chains in the Genus database with same CATH superfamily
1QN8A 3C04A 2F7LA 4B0AA 3CWSA 3CVTA 2XHIA 3H1ZA 2NLVA 1M3QA 1QNAA 3OC3C 1QTPA 1C4GA 1VOLB 1FN7A 2Z8UA 1QN5A 2HKPA 2OOYA 2YH5A 1YQMA 1NH2A 1UT7A 1YQKA 4I8OA 2NOBA 2IV8A 3HS8A 4BJUA 1LWWA 4WZSD 2D0AA 1YQRA 1VKLA 1PZDA 1W80A 1P5GX 5JN5A 4RODB 1P5DX 5IYBP 1JDYA 1QN6A 1XSZA 5EPCA 5JMVD 3VN5A 3KRMA 2I5WA 1MP9A 1DIZA 3RSMA 1C47A 3ULXA 5F9CA 1NVPA 1YTFA 1EUVA 1VTLE 1JFIC 4EJYA 3EIKA 2FKMX 5BMNA 1QTSA 1TBPA 1QNBA 2Z0FA 1KYDA 1D3UA 2OOXA 3TE5A 1PCJX 2O3OA 5AN4A 3CWAA 2JOIA 2NOZA 2HL9A 1B9KA 5IYDP 1VOKA 1VTOA 1QN9A 1TGHA 4EAGA 2Y8QA 4DULA 2V8QA 3I0WA 1V5SA 2DKDA 4WX8A 3CWTA 2V92A 3CWUA 1KFIA 4EAJA 2QR1A 1YQLA 1KFQA 1QN7A 1K2YX 1HU0A 1N3AA 4CFFA 1TBAB 2FUVA 2JHNA 1N39A 2NOFA 4D7QA 3CW7A 3DPTA 3ENCA 3SNSA 1MPGA 2V9JA 2R5XA 1KO9A 2NOHA 1PCMX 1LXTA 3HS9A 2HL8A 2IV9A 2NVMA 3ENOC 4TPSA 2VJ0A 3OH9A 2D0BA 1PCZA 2H5AX 3F10A 1J3MA 3ASMA 1QNCA 4IL8A 1YTBA 3NA5A 1RM1A 4MRQA 2H4LX 3EAYA 1N3CA 2NWVA 3UW2A 2DKCA 5KL0A 2NOLA 1PVSA 3D4VA 2D0CA 2DKAA 2MZ8A 3RPJA 3OLPA 3I0XA 1M5Q1 4PY5A 4HJHA 2MJ7A 2QRCA 1WQAA 1T6AA 1WJWA 2HZMA 4ROCB 1R4XA 1KY7A 3OH6A 1UT4A 2YA3A 5BMPA 1E42A 1AISA 3T4NA 2Y8LA 4EAKA 1TUOA 1C9BB 4QG5A 5IYCP 2QLVA 1QN3A 1K35A 2QRDA 3PMGA 3OCIA 3BKQX 5HSHA 3OGDA 2HZSA 2QREA 3PDKA 1LWYA 1UL7A 1CDWA 1QNEA 1M3HA 3D7QA 1LWVA 1NGMA 1Q9UA 3KTUA 3N89A 4EALA 2EHBD 3OSMA 3TDHA 2NOIA 1KY6A 4C7PA 4EJZA 3OSEA 3OSTA 2G30A 2FGTA 2ZFDB 4WXAA 2NOEA 4Q11A 2JHJA 4D7RA 4ROEB 2PWWA 3DPUA 1KYUA 4EAIA 1QN4A 2JPIA 2LAEA 3F0ZA 3CVSA 3I3WA 1KYFA 1EBMA 3IH7A 2FKFA
chains in the Genus database with same CATH topology
1QN8A 4B0AA 2XHIA 3H1ZA 1M3QA 1QNAA 3OC3C 1QTPA 1VOLB 1FN7A 2Z8UA 1QN5A 2YH5A 1YQMA 1NH2A 1UT7A 1YQKA 2NOBA 2IV8A 3HS8A 1LWWA 4WZSD 2D0AA 1YQRA 1PZDA 1W80A 4RODB 5IYBP 1QN6A 3VN5A 3KRMA 2I5WA 1MP9A 3ULXA 1NVPA 1YTFA 1JFIC 1VTLE 4EJYA 3EIKA 1QTSA 1TBPA 1QNBA 1D3UA 1KYDA 2NOZA 5AN4A 2O3OA 2JOIA 5IYDP 1B9KA 1VOKA 1VTOA 1QN9A 1TGHA 4DULA 3I0WA 1YQLA 1QN7A 1HU0A 1N3AA 1TBAB 1N39A 2NOFA 3DPTA 3SNSA 1KO9A 2NOHA 3HS9A 2IV9A 4TPSA 2VJ0A 2D0BA 1PCZA 3F10A 3ASMA 1QNCA 1YTBA 1RM1A 1N3CA 2NOLA 2D0CA 2MZ8A 3RPJA 3I0XA 4PY5A 2MJ7A 2HZMA 4ROCB 1R4XA 1KY7A 1AISA 1UT4A 1E42A 1C9BB 1QN3A 5IYCP 3OCIA 2HZSA 1LWYA 1CDWA 1QNEA 1M3HA 1LWVA 1NGMA 3KTUA 3N89A 3OSMA 2NOIA 1KY6A 4EJZA 3OSTA 2G30A 2FGTA 2NOEA 4Q11A 4ROEB 3DPUA 1QN4A 1KYUA 2LAEA 3F0ZA 1KYFA 1EBMA 3IH7A 4I8OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NVP A;  1YTF A;  1QN8 A;  4B0A A;  1JFI C;  1VTL E;  4ROC B;  1R4X A;  1KY7 A;  3EIK A;  3H1Z A;  1AIS A;  1QTS A;  1E42 A;  1TBP A;  1QNB A;  3VN5 A;  1C9B B;  1KYD A;  3OC3 C;  1D3U A;  5IYC P;  1QNA A;  3HS9 A;  1QN3 A;  1QTP A;  2IV9 A;  3OCI A;  1VOL B;  5IYD P;  1B9K A;  2Z8U A;  1QN5 A;  1VOK A;  1VTO A;  1CDW A;  2VJ0 A;  1QN9 A;  1QNE A;  1NH2 A;  1TGH A;  2D0B A;  1PCZ A;  1NGM A;  2IV8 A;  3HS8 A;  3ASM A;  1QNC A;  1YTB A;  1KY6 A;  1RM1 A;  4WZS D;  1QN7 A;  2G30 A;  2D0A A;  1TBA B;  1PZD A;  2D0C A;  1W80 A;  4ROE B;  4ROD B;  1QN4 A;  1KYU A;  5IYB P;  1QN6 A;  4PY5 A;  2MJ7 A;  1KYF A;  1MP9 A; 
#chains in the Genus database with same CATH topology
 1QN8 A;  3C04 A;  2F7L A;  4B0A A;  3CWS A;  3CVT A;  2XHI A;  3H1Z A;  2NLV A;  1M3Q A;  1QNA A;  3OC3 C;  1QTP A;  1C4G A;  1VOL B;  1FN7 A;  2Z8U A;  1QN5 A;  2HKP A;  2OOY A;  2YH5 A;  1YQM A;  1NH2 A;  1UT7 A;  1YQK A;  4I8O A;  2NOB A;  2IV8 A;  3HS8 A;  4BJU A;  1LWW A;  4WZS D;  2D0A A;  1YQR A;  1VKL A;  1PZD A;  1W80 A;  1P5G X;  5JN5 A;  4ROD B;  1P5D X;  5IYB P;  1JDY A;  1QN6 A;  1XSZ A;  5EPC A;  5JMV D;  3VN5 A;  3KRM A;  2I5W A;  1MP9 A;  1DIZ A;  3RSM A;  1C47 A;  3ULX A;  5F9C A;  1NVP A;  1YTF A;  1EUV A;  1VTL E;  1JFI C;  4EJY A;  3EIK A;  2FKM X;  5BMN A;  1QTS A;  1TBP A;  1QNB A;  2Z0F A;  1KYD A;  1D3U A;  2OOX A;  3TE5 A;  1PCJ X;  2O3O A;  5AN4 A;  3CWA A;  2JOI A;  2NOZ A;  2HL9 A;  1B9K A;  5IYD P;  1VOK A;  1VTO A;  1QN9 A;  1TGH A;  4EAG A;  2Y8Q A;  4DUL A;  2V8Q A;  3I0W A;  1V5S A;  2DKD A;  4WX8 A;  3CWT A;  2V92 A;  3CWU A;  1KFI A;  4EAJ A;  2QR1 A;  1YQL A;  1KFQ A;  1QN7 A;  1K2Y X;  1HU0 A;  1N3A A;  4CFF A;  1TBA B;  2FUV A;  2JHN A;  1N39 A;  2NOF A;  4D7Q A;  3CW7 A;  3DPT A;  3ENC A;  3SNS A;  1MPG A;  2V9J A;  2R5X A;  1KO9 A;  2NOH A;  1PCM X;  1LXT A;  3HS9 A;  2HL8 A;  2IV9 A;  2NVM A;  3ENO C;  4TPS A;  2VJ0 A;  3OH9 A;  2D0B A;  1PCZ A;  2H5A X;  3F10 A;  1J3M A;  3ASM A;  1QNC A;  4IL8 A;  1YTB A;  3NA5 A;  1RM1 A;  4MRQ A;  2H4L X;  3EAY A;  1N3C A;  2NWV A;  3UW2 A;  2DKC A;  5KL0 A;  2NOL A;  1PVS A;  3D4V A;  2D0C A;  2DKA A;  2MZ8 A;  3RPJ A;  3OLP A;  3I0X A;  1M5Q 1;  4PY5 A;  4HJH A;  2MJ7 A;  2QRC A;  1WQA A;  1T6A A;  1WJW A;  2HZM A;  4ROC B;  1R4X A;  1KY7 A;  3OH6 A;  1UT4 A;  2YA3 A;  5BMP A;  1E42 A;  1AIS A;  3T4N A;  2Y8L A;  4EAK A;  1TUO A;  1C9B B;  4QG5 A;  5IYC P;  2QLV A;  1QN3 A;  1K35 A;  2QRD A;  3PMG A;  3OCI A;  3BKQ X;  5HSH A;  3OGD A;  2HZS A;  2QRE A;  3PDK A;  1LWY A;  1UL7 A;  1CDW A;  1QNE A;  1M3H A;  3D7Q A;  1LWV A;  1NGM A;  1Q9U A;  3KTU A;  3N89 A;  4EAL A;  2EHB D;  3OSM A;  3TDH A;  2NOI A;  1KY6 A;  4C7P A;  4EJZ A;  3OSE A;  3OST A;  2G30 A;  2FGT A;  2ZFD B;  4WXA A;  2NOE A;  4Q11 A;  2JHJ A;  4D7R A;  4ROE B;  2PWW A;  3DPU A;  1KYU A;  4EAI A;  1QN4 A;  2JPI A;  2LAE A;  3F0Z A;  3CVS A;  3I3W A;  1KYF A;  1EBM A;  3IH7 A;  2FKF A; 
#chains in the Genus database with same CATH homology
 1QN8 A;  4B0A A;  2XHI A;  3H1Z A;  1M3Q A;  1QNA A;  3OC3 C;  1QTP A;  1VOL B;  1FN7 A;  2Z8U A;  1QN5 A;  2YH5 A;  1YQM A;  1NH2 A;  1UT7 A;  1YQK A;  2NOB A;  2IV8 A;  3HS8 A;  1LWW A;  4WZS D;  2D0A A;  1YQR A;  1PZD A;  1W80 A;  4ROD B;  5IYB P;  1QN6 A;  3VN5 A;  3KRM A;  2I5W A;  1MP9 A;  3ULX A;  1NVP A;  1YTF A;  1JFI C;  1VTL E;  4EJY A;  3EIK A;  1QTS A;  1TBP A;  1QNB A;  1D3U A;  1KYD A;  2NOZ A;  5AN4 A;  2O3O A;  2JOI A;  5IYD P;  1B9K A;  1VOK A;  1VTO A;  1QN9 A;  1TGH A;  4DUL A;  3I0W A;  1YQL A;  1QN7 A;  1HU0 A;  1N3A A;  1TBA B;  1N39 A;  2NOF A;  3DPT A;  3SNS A;  1KO9 A;  2NOH A;  3HS9 A;  2IV9 A;  4TPS A;  2VJ0 A;  2D0B A;  1PCZ A;  3F10 A;  3ASM A;  1QNC A;  1YTB A;  1RM1 A;  1N3C A;  2NOL A;  2D0C A;  2MZ8 A;  3RPJ A;  3I0X A;  4PY5 A;  2MJ7 A;  2HZM A;  4ROC B;  1R4X A;  1KY7 A;  1AIS A;  1UT4 A;  1E42 A;  1C9B B;  1QN3 A;  5IYC P;  3OCI A;  2HZS A;  1LWY A;  1CDW A;  1QNE A;  1M3H A;  1LWV A;  1NGM A;  3KTU A;  3N89 A;  3OSM A;  2NOI A;  1KY6 A;  4EJZ A;  3OST A;  2G30 A;  2FGT A;  2NOE A;  4Q11 A;  4ROE B;  3DPU A;  1QN4 A;  1KYU A;  2LAE A;  3F0Z A;  1KYF A;  1EBM A;  3IH7 A;  4I8O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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