1AISA

Tata-binding protein/transcription factor (ii)b/tata-box complex from pyrococcus woesei
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
181
structure length
181
Chain Sequence
MVDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box.
pubmed doi rcsb
molecule keywords DNA (5'-D(*AP*AP*CP*TP*TP*AP*CP*TP*TP*TP*(5IU)P*(5IU)P*AP*AP
molecule tags Transcription/dna
source organism Pyrococcus woesei
total genus 44
structure length 181
sequence length 181
ec nomenclature
pdb deposition date 1997-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1aisA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1aisA02
1NVPA 5IYCP 1PCZA 1B9KA 2VJ0A 4ROCB 4B0AA 3OC3C 5IYDP 1QNAA 1AISA 3ASMA 1CDWA 1VTOA 1NH2A 1W80A 1RM1A 1D3UA 3H1ZA 1QNCA 2IV9A 3HS9A 1TBPA 2G30A 3HS8A 4RODB 1QN7A 1QN6A 1YTFA 1QTPA 1MP9A 5IYBP 1NGMA 4ROEB 1E42A 1C9BB 2Z8UA 1TGHA 3VN5A 1PZDA 1QN8A 1QN4A 1JFIC 1VOLB 1KY7A 3OCIA 1QNBA 1VOKA 2IV8A 1KYFA 3EIKA 1R4XA 1KYDA 2D0CA 4PY5A 2D0AA 2MJ7A 4WZSD 1TBAB 1QN3A 1QNEA 1VTLE 1KY6A 1QTSA 1QN5A 1YTBA 1QN9A 1KYUA 2D0BA
chains in the Genus database with same CATH superfamily
2HL9A 1B9KA 4ROCB 1AISA 2I5WA 3NA5A 1D3UA 3OSEA 1QNCA 1C47A 1K2YX 1XSZA 2FKFA 2IV9A 3HS9A 4RODB 2QREA 2V92A 3OH6A 1DIZA 3OSMA 1KFIA 3F10A 1MPGA 3OSTA 1TGHA 1KFQA 1TUOA 5EPCA 2QR1A 2LAEA 1JFIC 3DPUA 1QNBA 2NLVA 2IV8A 5HSHA 2FUVA 3CWAA 4EAIA 2HKPA 3C04A 3D7QA 1KYDA 4EAGA 3D4VA 4EAJA 2F7LA 2MJ7A 2JPIA 1WQAA 3UW2A 2Z0FA 4C7PA 4MRQA 2JHNA 2QLVA 2XHIA 1K35A 1N3AA 1PCZA 2VJ0A 2HZSA 5IYDP 1UL7A 1QNAA 1CDWA 2V9JA 3SNSA 1YQMA 3T4NA 1KO9A 1YTFA 3BKQX 4DULA 3OGDA 1HU0A 1LXTA 3CWUA 1C9BB 2NVMA 3TE5A 5KL0A 3OH9A 2JHJA 3PDKA 4WX8A 1KY7A 3OCIA 1EUVA 1C4GA 3PMGA 4QG5A 4WXAA 4EALA 2NOLA 2FGTA 1KYFA 2Y8QA 1LWWA 2NOZA 1VKLA 4TPSA 4EJYA 2NOIA 2R5XA 3DPTA 2HL8A 1KY6A 1QTSA 3N89A 1YQRA 1YTBA 1PCMX 5JMVD 1KYUA 1T6AA 2H4LX 3I0XA 1NVPA 2ZFDB 4B0AA 2DKCA 3ENCA 3CWTA 3CW7A 2YH5A 1VTOA 3KTUA 1M3HA 1W80A 1RM1A 2FKMX 3KRMA 3H1ZA 3I3WA 1PCJX 4BJUA 3CWSA 2G30A 2V8QA 3HS8A 1QN6A 3CVSA 5IYBP 4ROEB 1E42A 3I0WA 2NOHA 5AN4A 2QRDA 2DKDA 3F0ZA 2D0CA 2D0AA 1UT4A 1LWVA 1N3CA 4CFFA 1TBAB 1QN3A 1QNEA 2DKAA 3ENOC 1M5Q1 2OOXA 4I8OA 2H5AX 4Q11A 2MZ8A 1Q9UA 4D7QA 5F9CA 1QN4A 1N39A 5IYCP 1J3MA 1PVSA 2PWWA 2JOIA 1YQKA 3OC3C 3RPJA 2NOBA 3ASMA 1NH2A 2YA3A 1LWYA 1EBMA 3IH7A 1TBPA 3CVTA 1YQLA 1M3QA 1QN7A 1QTPA 5BMPA 1MP9A 2HZMA 3RSMA 4D7RA 1NGMA 2OOYA 3TDHA 2Z8UA 3OLPA 2EHBD 2QRCA 3VN5A 1PZDA 2NWVA 5BMNA 1QN8A 2NOFA 1VOLB 1V5SA 2O3OA 2NOEA 1JDYA 4EAKA 1VOKA 3EAYA 3EIKA 1R4XA 2Y8LA 4HJHA 5JN5A 4PY5A 1WJWA 3ULXA 4WZSD 1FN7A 4EJZA 1VTLE 1P5GX 1QN5A 1QN9A 4IL8A 1UT7A 2D0BA 1P5DX
chains in the Genus database with same CATH topology
1B9KA 4ROCB 1AISA 2I5WA 1D3UA 1QNCA 2IV9A 3HS9A 4RODB 3OSMA 3F10A 1TGHA 3OSTA 2LAEA 1JFIC 3DPUA 1QNBA 2IV8A 1KYDA 2MJ7A 2XHIA 1N3AA 1PCZA 2VJ0A 2HZSA 5IYDP 1QNAA 1CDWA 3SNSA 1YQMA 1KO9A 1YTFA 4DULA 1HU0A 1C9BB 1KY7A 3OCIA 2NOLA 2FGTA 1KYFA 1LWWA 2NOZA 4TPSA 4EJYA 2NOIA 3DPTA 1KY6A 1QTSA 3N89A 1YQRA 1YTBA 1KYUA 3I0XA 1NVPA 4B0AA 2YH5A 1VTOA 3KTUA 1M3HA 1W80A 1RM1A 3KRMA 3H1ZA 2G30A 3HS8A 1QN6A 5IYBP 4ROEB 1E42A 3I0WA 2NOHA 5AN4A 3F0ZA 2D0CA 2D0AA 1UT4A 1LWVA 1N3CA 1TBAB 1QN3A 1QNEA 4I8OA 4Q11A 2MZ8A 1QN4A 1N39A 5IYCP 2NOBA 2JOIA 1YQKA 3OC3C 3RPJA 3ASMA 1NH2A 1LWYA 1EBMA 3IH7A 1TBPA 1YQLA 1M3QA 1QN7A 1QTPA 1MP9A 2HZMA 1NGMA 2Z8UA 3VN5A 1PZDA 1QN8A 2NOFA 1VOLB 2O3OA 2NOEA 1VOKA 3EIKA 1R4XA 4PY5A 3ULXA 4WZSD 1FN7A 4EJZA 1VTLE 1QN5A 1QN9A 1UT7A 2D0BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NVP A;  5IYC P;  1PCZ A;  1B9K A;  2VJ0 A;  4ROC B;  4B0A A;  3OC3 C;  5IYD P;  1QNA A;  1AIS A;  3ASM A;  1CDW A;  1VTO A;  1NH2 A;  1W80 A;  1RM1 A;  1D3U A;  3H1Z A;  1QNC A;  2IV9 A;  3HS9 A;  1TBP A;  2G30 A;  3HS8 A;  4ROD B;  1QN7 A;  1QN6 A;  1YTF A;  1QTP A;  1MP9 A;  5IYB P;  1NGM A;  4ROE B;  1E42 A;  1C9B B;  2Z8U A;  1TGH A;  3VN5 A;  1PZD A;  1QN8 A;  1QN4 A;  1JFI C;  1VOL B;  1KY7 A;  3OCI A;  1QNB A;  1VOK A;  2IV8 A;  1KYF A;  3EIK A;  1R4X A;  1KYD A;  2D0C A;  4PY5 A;  2D0A A;  2MJ7 A;  4WZS D;  1TBA B;  1QN3 A;  1QNE A;  1VTL E;  1KY6 A;  1QTS A;  1QN5 A;  1YTB A;  1QN9 A;  1KYU A;  2D0B A; 
#chains in the Genus database with same CATH topology
 2HL9 A;  1B9K A;  4ROC B;  1AIS A;  2I5W A;  3NA5 A;  1D3U A;  3OSE A;  1QNC A;  1C47 A;  1K2Y X;  1XSZ A;  2FKF A;  2IV9 A;  3HS9 A;  4ROD B;  2QRE A;  2V92 A;  3OH6 A;  1DIZ A;  3OSM A;  1KFI A;  3F10 A;  1MPG A;  3OST A;  1TGH A;  1KFQ A;  1TUO A;  5EPC A;  2QR1 A;  2LAE A;  1JFI C;  3DPU A;  1QNB A;  2NLV A;  2IV8 A;  5HSH A;  2FUV A;  3CWA A;  4EAI A;  2HKP A;  3C04 A;  3D7Q A;  1KYD A;  4EAG A;  3D4V A;  4EAJ A;  2F7L A;  2MJ7 A;  2JPI A;  1WQA A;  3UW2 A;  2Z0F A;  4C7P A;  4MRQ A;  2JHN A;  2QLV A;  2XHI A;  1K35 A;  1N3A A;  1PCZ A;  2VJ0 A;  2HZS A;  5IYD P;  1UL7 A;  1QNA A;  1CDW A;  2V9J A;  3SNS A;  1YQM A;  3T4N A;  1KO9 A;  1YTF A;  3BKQ X;  4DUL A;  3OGD A;  1HU0 A;  1LXT A;  3CWU A;  1C9B B;  2NVM A;  3TE5 A;  5KL0 A;  3OH9 A;  2JHJ A;  3PDK A;  4WX8 A;  1KY7 A;  3OCI A;  1EUV A;  1C4G A;  3PMG A;  4QG5 A;  4WXA A;  4EAL A;  2NOL A;  2FGT A;  1KYF A;  2Y8Q A;  1LWW A;  2NOZ A;  1VKL A;  4TPS A;  4EJY A;  2NOI A;  2R5X A;  3DPT A;  2HL8 A;  1KY6 A;  1QTS A;  3N89 A;  1YQR A;  1YTB A;  1PCM X;  5JMV D;  1KYU A;  1T6A A;  2H4L X;  3I0X A;  1NVP A;  2ZFD B;  4B0A A;  2DKC A;  3ENC A;  3CWT A;  3CW7 A;  2YH5 A;  1VTO A;  3KTU A;  1M3H A;  1W80 A;  1RM1 A;  2FKM X;  3KRM A;  3H1Z A;  3I3W A;  1PCJ X;  4BJU A;  3CWS A;  2G30 A;  2V8Q A;  3HS8 A;  1QN6 A;  3CVS A;  5IYB P;  4ROE B;  1E42 A;  3I0W A;  2NOH A;  5AN4 A;  2QRD A;  2DKD A;  3F0Z A;  2D0C A;  2D0A A;  1UT4 A;  1LWV A;  1N3C A;  4CFF A;  1TBA B;  1QN3 A;  1QNE A;  2DKA A;  3ENO C;  1M5Q 1;  2OOX A;  4I8O A;  2H5A X;  4Q11 A;  2MZ8 A;  1Q9U A;  4D7Q A;  5F9C A;  1QN4 A;  1N39 A;  5IYC P;  1J3M A;  1PVS A;  2PWW A;  2JOI A;  1YQK A;  3OC3 C;  3RPJ A;  2NOB A;  3ASM A;  1NH2 A;  2YA3 A;  1LWY A;  1EBM A;  3IH7 A;  1TBP A;  3CVT A;  1YQL A;  1M3Q A;  1QN7 A;  1QTP A;  5BMP A;  1MP9 A;  2HZM A;  3RSM A;  4D7R A;  1NGM A;  2OOY A;  3TDH A;  2Z8U A;  3OLP A;  2EHB D;  2QRC A;  3VN5 A;  1PZD A;  2NWV A;  5BMN A;  1QN8 A;  2NOF A;  1VOL B;  1V5S A;  2O3O A;  2NOE A;  1JDY A;  4EAK A;  1VOK A;  3EAY A;  3EIK A;  1R4X A;  2Y8L A;  4HJH A;  5JN5 A;  4PY5 A;  1WJW A;  3ULX A;  4WZS D;  1FN7 A;  4EJZ A;  1VTL E;  1P5G X;  1QN5 A;  1QN9 A;  4IL8 A;  1UT7 A;  2D0B A;  1P5D X; 
#chains in the Genus database with same CATH homology
 1B9K A;  4ROC B;  1AIS A;  2I5W A;  1D3U A;  1QNC A;  2IV9 A;  3HS9 A;  4ROD B;  3OSM A;  3F10 A;  1TGH A;  3OST A;  2LAE A;  1JFI C;  3DPU A;  1QNB A;  2IV8 A;  1KYD A;  2MJ7 A;  2XHI A;  1N3A A;  1PCZ A;  2VJ0 A;  2HZS A;  5IYD P;  1QNA A;  1CDW A;  3SNS A;  1YQM A;  1KO9 A;  1YTF A;  4DUL A;  1HU0 A;  1C9B B;  1KY7 A;  3OCI A;  2NOL A;  2FGT A;  1KYF A;  1LWW A;  2NOZ A;  4TPS A;  4EJY A;  2NOI A;  3DPT A;  1KY6 A;  1QTS A;  3N89 A;  1YQR A;  1YTB A;  1KYU A;  3I0X A;  1NVP A;  4B0A A;  2YH5 A;  1VTO A;  3KTU A;  1M3H A;  1W80 A;  1RM1 A;  3KRM A;  3H1Z A;  2G30 A;  3HS8 A;  1QN6 A;  5IYB P;  4ROE B;  1E42 A;  3I0W A;  2NOH A;  5AN4 A;  3F0Z A;  2D0C A;  2D0A A;  1UT4 A;  1LWV A;  1N3C A;  1TBA B;  1QN3 A;  1QNE A;  4I8O A;  4Q11 A;  2MZ8 A;  1QN4 A;  1N39 A;  5IYC P;  2NOB A;  2JOI A;  1YQK A;  3OC3 C;  3RPJ A;  3ASM A;  1NH2 A;  1LWY A;  1EBM A;  3IH7 A;  1TBP A;  1YQL A;  1M3Q A;  1QN7 A;  1QTP A;  1MP9 A;  2HZM A;  1NGM A;  2Z8U A;  3VN5 A;  1PZD A;  1QN8 A;  2NOF A;  1VOL B;  2O3O A;  2NOE A;  1VOK A;  3EIK A;  1R4X A;  4PY5 A;  3ULX A;  4WZS D;  1FN7 A;  4EJZ A;  1VTL E;  1QN5 A;  1QN9 A;  1UT7 A;  2D0B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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