1D3UA

Tata-binding protein/transcription factor (ii)b/bre+tata-box complex from pyrococcus woesei
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
181
structure length
181
Chain Sequence
MVDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structural basis for the oriented assembly of a TBP/TFB/promoter complex.
pubmed doi rcsb
molecule keywords DNA 24-MER: BRE+TATA-BOX
molecule tags Gene regulation/dna
source organism Pyrococcus woesei
total genus 42
structure length 181
sequence length 181
ec nomenclature
pdb deposition date 1999-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1d3uA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1d3uA02
4PY5A 1TBAB 1QN8A 2Z8UA 1W80A 4ROEB 2IV9A 1KYDA 4WZSD 1VTOA 1QNAA 1QNEA 1YTBA 3VN5A 1PZDA 2D0CA 2D0AA 4ROCB 1D3UA 1C9BB 3HS8A 1AISA 3EIKA 1QN4A 3HS9A 3OCIA 1R4XA 1B9KA 2VJ0A 1KY7A 1NH2A 1QN9A 1VOKA 1E42A 1TBPA 1NGMA 1QNCA 1QN3A 2MJ7A 2G30A 5IYBP 3ASMA 1PCZA 1JFIC 4B0AA 1YTFA 1KY6A 2IV8A 1KYUA 4RODB 1CDWA 5IYCP 1VTLE 1QTPA 1QN6A 3H1ZA 3OC3C 1QTSA 1NVPA 1QN5A 1QN7A 5IYDP 1KYFA 1QNBA 1MP9A 1RM1A 1TGHA 1VOLB 2D0BA
chains in the Genus database with same CATH superfamily
2HZSA 4Q11A 2XHIA 2HKPA 2PWWA 3KTUA 1YQMA 1FN7A 3CWTA 2NOLA 3F0ZA 1N3AA 1VTOA 1YTBA 1QNEA 1MPGA 2OOYA 1Q9UA 1EUVA 2D0CA 1M5Q1 3SNSA 3HS8A 3PMGA 3T4NA 1AISA 2NOBA 2FGTA 1KFQA 3CVTA 4IL8A 2NWVA 1R4XA 1NH2A 1KO9A 1K2YX 2MJ7A 2NOFA 2HZMA 2DKAA 3OH9A 1K35A 2R5XA 4EAJA 1KYUA 3I3WA 2JOIA 3C04A 1QTPA 1QN6A 3H1ZA 3OC3C 4EAGA 3IH7A 3UW2A 1JDYA 1EBMA 5IYDP 2HL9A 1KFIA 1VTLE 4I8OA 1RM1A 1QNBA 1P5GX 2NOHA 1TBAB 2DKDA 1LXTA 2Z8UA 3OSMA 2IV9A 4CFFA 1YQKA 3ENOC 3I0XA 2I5WA 3VN5A 1PZDA 4BJUA 3CW7A 2HL8A 2NOZA 3CWSA 1T6AA 5BMNA 1LWYA 2DKCA 2VJ0A 2FUVA 2JHJA 2ZFDB 1TBPA 2YH5A 5F9CA 2F7LA 1PCJX 1PCZA 4C7PA 5JN5A 2MZ8A 4QG5A 3DPUA 1JFIC 2QR1A 1TGHA 4EAKA 3NA5A 2OOXA 2JHNA 5AN4A 3ENCA 4EAIA 1NVPA 3KRMA 1UT7A 2O3OA 2LAEA 1VOLB 1M3HA 1WJWA 2QLVA 3CWUA 4EJZA 3RSMA 4D7RA 4HJHA 2FKMX 3OSTA 4PY5A 1W80A 4ROEB 1LWVA 1KYDA 1QNAA 3OH6A 3DPTA 5KL0A 3TE5A 2D0AA 2JPIA 2QRDA 2QREA 4TPSA 5EPCA 1C9BB 1UT4A 3OSEA 5BMPA 1PCMX 1WQAA 1DIZA 2Y8LA 1QN4A 2H4LX 2FKFA 3CWAA 3OCIA 1B9KA 2EHBD 1QN9A 1E42A 1NGMA 3EAYA 1QNCA 3F10A 2G30A 3I0WA 1C47A 3OGDA 1LWWA 2H5AX 4B0AA 1TUOA 1XSZA 5HSHA 1M3QA 1YTFA 2IV8A 4EJYA 1CDWA 3D4VA 4DULA 5IYCP 1VKLA 4WX8A 2V8QA 3PDKA 4MRQA 4EALA 1QN5A 1QN8A 2NOEA 2D0BA 1N39A 2QRCA 4WZSD 1YQLA 1P5DX 2Y8QA 4ROCB 1D3UA 1UL7A 1YQRA 1J3MA 2YA3A 3EIKA 3HS9A 2V9JA 2NLVA 2NVMA 3N89A 3ULXA 1C4GA 1KY7A 2NOIA 1VOKA 1QN3A 3D7QA 1PVSA 5IYBP 3ASMA 4WXAA 4D7QA 3OLPA 1KY6A 3CVSA 1V5SA 4RODB 2Z0FA 3BKQX 3RPJA 1QTSA 1QN7A 1HU0A 1KYFA 5JMVD 1MP9A 1N3CA 3TDHA 2V92A
chains in the Genus database with same CATH topology
2HZSA 4Q11A 2XHIA 1YQMA 2NOLA 3KTUA 1FN7A 3F0ZA 1N3AA 1VTOA 1YTBA 1QNEA 2D0CA 3SNSA 3HS8A 1AISA 2NOBA 2FGTA 1R4XA 1NH2A 1KO9A 2NOFA 2MJ7A 2HZMA 1KYUA 2JOIA 1QTPA 1QN6A 3H1ZA 3OC3C 3IH7A 5IYDP 1QNBA 1VTLE 4I8OA 1RM1A 2NOHA 1TBAB 2Z8UA 3OSMA 2IV9A 1YQKA 3I0XA 2I5WA 3VN5A 1PZDA 2NOZA 1LWYA 2VJ0A 1TBPA 2YH5A 1PCZA 2MZ8A 1JFIC 3DPUA 1TGHA 5AN4A 1NVPA 3KRMA 1UT7A 2O3OA 2LAEA 1VOLB 1M3HA 4EJZA 4PY5A 3OSTA 1W80A 4ROEB 1LWVA 1KYDA 1QNAA 3DPTA 2D0AA 4TPSA 1C9BB 1UT4A 1QN4A 3OCIA 1B9KA 1QN9A 1E42A 1NGMA 1QNCA 3F10A 2G30A 3I0WA 1LWWA 4B0AA 1M3QA 1YTFA 4EJYA 2IV8A 1CDWA 4DULA 5IYCP 1QN5A 1QN8A 2NOEA 2D0BA 1N39A 4WZSD 1YQLA 4ROCB 1D3UA 1YQRA 3EIKA 3HS9A 3N89A 3ULXA 1KY7A 2NOIA 1VOKA 1QN3A 5IYBP 3ASMA 1KY6A 4RODB 3RPJA 1QTSA 1QN7A 1HU0A 1KYFA 1MP9A 1N3CA 1EBMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PY5 A;  1TBA B;  1QN8 A;  2Z8U A;  1W80 A;  4ROE B;  2IV9 A;  1KYD A;  4WZS D;  1VTO A;  1QNA A;  1QNE A;  1YTB A;  3VN5 A;  1PZD A;  2D0C A;  2D0A A;  4ROC B;  1D3U A;  1C9B B;  3HS8 A;  1AIS A;  3EIK A;  1QN4 A;  3HS9 A;  3OCI A;  1R4X A;  1B9K A;  2VJ0 A;  1KY7 A;  1NH2 A;  1QN9 A;  1VOK A;  1E42 A;  1TBP A;  1NGM A;  1QNC A;  1QN3 A;  2MJ7 A;  2G30 A;  5IYB P;  3ASM A;  1PCZ A;  1JFI C;  4B0A A;  1YTF A;  1KY6 A;  2IV8 A;  1KYU A;  4ROD B;  1CDW A;  5IYC P;  1VTL E;  1QTP A;  1QN6 A;  3H1Z A;  3OC3 C;  1QTS A;  1NVP A;  1QN5 A;  1QN7 A;  5IYD P;  1KYF A;  1QNB A;  1MP9 A;  1RM1 A;  1TGH A;  1VOL B;  2D0B A; 
#chains in the Genus database with same CATH topology
 2HZS A;  4Q11 A;  2XHI A;  2HKP A;  2PWW A;  3KTU A;  1YQM A;  1FN7 A;  3CWT A;  2NOL A;  3F0Z A;  1N3A A;  1VTO A;  1YTB A;  1QNE A;  1MPG A;  2OOY A;  1Q9U A;  1EUV A;  2D0C A;  1M5Q 1;  3SNS A;  3HS8 A;  3PMG A;  3T4N A;  1AIS A;  2NOB A;  2FGT A;  1KFQ A;  3CVT A;  4IL8 A;  2NWV A;  1R4X A;  1NH2 A;  1KO9 A;  1K2Y X;  2MJ7 A;  2NOF A;  2HZM A;  2DKA A;  3OH9 A;  1K35 A;  2R5X A;  4EAJ A;  1KYU A;  3I3W A;  2JOI A;  3C04 A;  1QTP A;  1QN6 A;  3H1Z A;  3OC3 C;  4EAG A;  3IH7 A;  3UW2 A;  1JDY A;  1EBM A;  5IYD P;  2HL9 A;  1KFI A;  1VTL E;  4I8O A;  1RM1 A;  1QNB A;  1P5G X;  2NOH A;  1TBA B;  2DKD A;  1LXT A;  2Z8U A;  3OSM A;  2IV9 A;  4CFF A;  1YQK A;  3ENO C;  3I0X A;  2I5W A;  3VN5 A;  1PZD A;  4BJU A;  3CW7 A;  2HL8 A;  2NOZ A;  3CWS A;  1T6A A;  5BMN A;  1LWY A;  2DKC A;  2VJ0 A;  2FUV A;  2JHJ A;  2ZFD B;  1TBP A;  2YH5 A;  5F9C A;  2F7L A;  1PCJ X;  1PCZ A;  4C7P A;  5JN5 A;  2MZ8 A;  4QG5 A;  3DPU A;  1JFI C;  2QR1 A;  1TGH A;  4EAK A;  3NA5 A;  2OOX A;  2JHN A;  5AN4 A;  3ENC A;  4EAI A;  1NVP A;  3KRM A;  1UT7 A;  2O3O A;  2LAE A;  1VOL B;  1M3H A;  1WJW A;  2QLV A;  3CWU A;  4EJZ A;  3RSM A;  4D7R A;  4HJH A;  2FKM X;  3OST A;  4PY5 A;  1W80 A;  4ROE B;  1LWV A;  1KYD A;  1QNA A;  3OH6 A;  3DPT A;  5KL0 A;  3TE5 A;  2D0A A;  2JPI A;  2QRD A;  2QRE A;  4TPS A;  5EPC A;  1C9B B;  1UT4 A;  3OSE A;  5BMP A;  1PCM X;  1WQA A;  1DIZ A;  2Y8L A;  1QN4 A;  2H4L X;  2FKF A;  3CWA A;  3OCI A;  1B9K A;  2EHB D;  1QN9 A;  1E42 A;  1NGM A;  3EAY A;  1QNC A;  3F10 A;  2G30 A;  3I0W A;  1C47 A;  3OGD A;  1LWW A;  2H5A X;  4B0A A;  1TUO A;  1XSZ A;  5HSH A;  1M3Q A;  1YTF A;  2IV8 A;  4EJY A;  1CDW A;  3D4V A;  4DUL A;  5IYC P;  1VKL A;  4WX8 A;  2V8Q A;  3PDK A;  4MRQ A;  4EAL A;  1QN5 A;  1QN8 A;  2NOE A;  2D0B A;  1N39 A;  2QRC A;  4WZS D;  1YQL A;  1P5D X;  2Y8Q A;  4ROC B;  1D3U A;  1UL7 A;  1YQR A;  1J3M A;  2YA3 A;  3EIK A;  3HS9 A;  2V9J A;  2NLV A;  2NVM A;  3N89 A;  3ULX A;  1C4G A;  1KY7 A;  2NOI A;  1VOK A;  1QN3 A;  3D7Q A;  1PVS A;  5IYB P;  3ASM A;  4WXA A;  4D7Q A;  3OLP A;  1KY6 A;  3CVS A;  1V5S A;  4ROD B;  2Z0F A;  3BKQ X;  3RPJ A;  1QTS A;  1QN7 A;  1HU0 A;  1KYF A;  5JMV D;  1MP9 A;  1N3C A;  3TDH A;  2V92 A; 
#chains in the Genus database with same CATH homology
 2HZS A;  4Q11 A;  2XHI A;  1YQM A;  2NOL A;  3KTU A;  1FN7 A;  3F0Z A;  1N3A A;  1VTO A;  1YTB A;  1QNE A;  2D0C A;  3SNS A;  3HS8 A;  1AIS A;  2NOB A;  2FGT A;  1R4X A;  1NH2 A;  1KO9 A;  2NOF A;  2MJ7 A;  2HZM A;  1KYU A;  2JOI A;  1QTP A;  1QN6 A;  3H1Z A;  3OC3 C;  3IH7 A;  5IYD P;  1QNB A;  1VTL E;  4I8O A;  1RM1 A;  2NOH A;  1TBA B;  2Z8U A;  3OSM A;  2IV9 A;  1YQK A;  3I0X A;  2I5W A;  3VN5 A;  1PZD A;  2NOZ A;  1LWY A;  2VJ0 A;  1TBP A;  2YH5 A;  1PCZ A;  2MZ8 A;  1JFI C;  3DPU A;  1TGH A;  5AN4 A;  1NVP A;  3KRM A;  1UT7 A;  2O3O A;  2LAE A;  1VOL B;  1M3H A;  4EJZ A;  4PY5 A;  3OST A;  1W80 A;  4ROE B;  1LWV A;  1KYD A;  1QNA A;  3DPT A;  2D0A A;  4TPS A;  1C9B B;  1UT4 A;  1QN4 A;  3OCI A;  1B9K A;  1QN9 A;  1E42 A;  1NGM A;  1QNC A;  3F10 A;  2G30 A;  3I0W A;  1LWW A;  4B0A A;  1M3Q A;  1YTF A;  4EJY A;  2IV8 A;  1CDW A;  4DUL A;  5IYC P;  1QN5 A;  1QN8 A;  2NOE A;  2D0B A;  1N39 A;  4WZS D;  1YQL A;  4ROC B;  1D3U A;  1YQR A;  3EIK A;  3HS9 A;  3N89 A;  3ULX A;  1KY7 A;  2NOI A;  1VOK A;  1QN3 A;  5IYB P;  3ASM A;  1KY6 A;  4ROD B;  3RPJ A;  1QTS A;  1QN7 A;  1HU0 A;  1KYF A;  1MP9 A;  1N3C A;  1EBM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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