1QNA | Genus

Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	47
sequence length	182
structure length	182
Chain Sequence	HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__391032688885052__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__391032688885052__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1qna/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__391032688885052__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"391032688885052","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1qna/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__391032688885052__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Tata box-binding protein (tbp)
source organism	Arabidopsis thaliana
publication title	TATA Element Recognition by the TATA Box-Binding Protein Has Been Conserved Throughout Evolution pubmed doi rcsb
molecule keywords	TRANSCRIPTION INITIATION FACTOR TFIID-1
total genus	47
structure length	182
sequence length	182
chains with identical sequence	B
ec nomenclature
pdb deposition date	1999-10-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00352	TBP	Transcription factor TFIID (or TATA-binding protein, TBP)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	1qnaA01
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	1qnaA02

1R4XA 1JFIC 1PCZA 3HS8A 5IYBP 1C9BB 1QN3A 2MJ7A 1QN8A 1QN5A 2IV9A 4ROEB 3HS9A 1TBPA 1QN9A 1YTFA 1VOKA 1QN4A 1QNAA 1KY6A 2D0BA 2G30A 1VTOA 3VN5A 1KYUA 4RODB 1AISA 1QNEA 1TGHA 1TBAB 1PZDA 1QNBA 1NGMA 1B9KA 1KYFA 2VJ0A 1QTPA 4B0AA 1CDWA 1QN6A 3EIKA 2Z8UA 2D0CA 1QNCA 1VOLB 1VTLE 3OC3C 5IYCP 1W80A 1QTSA 1KY7A 4PY5A 3ASMA 1E42A 1YTBA 1QN7A 2D0AA 1KYDA 1MP9A 4WZSD 1NH2A 4ROCB 2IV8A 1NVPA 3H1ZA 1D3UA 5IYDP 1RM1A 3OCIA
chains in the Genus database with same CATH superfamily

3IH7A 1R4XA 2NVMA 1PCZA 5IYBP 2Z0FA 3CWAA 4HJHA 5EPCA 3F10A 1QN5A 2QRDA 4TPSA 2NWVA 3OLPA 5JN5A 3OH9A 2O3OA 3ENOC 1YTFA 2YH5A 1QN4A 2HL9A 2D0BA 4QG5A 2FGTA 1QNEA 3D4VA 1KYUA 2NOHA 1MPGA 3OSMA 2DKAA 1PZDA 5AN4A 1NGMA 4MRQA 1B9KA 1EBMA 2Z8UA 2R5XA 4EALA 2V92A 1V5SA 3KRMA 1C47A 1LWVA 3TDHA 1YQLA 1KYDA 5KL0A 1NH2A 2NOEA 1UT4A 2Y8QA 5HSHA 1LWYA 1RM1A 1FN7A 3OSEA 5BMPA 4ROEB 2EHBD 4CFFA 2NLVA 2HL8A 1TBPA 1P5DX 1KY6A 1VTOA 1PCJX 2G30A 4RODB 1HU0A 1TGHA 1N3AA 3OSTA 2PWWA 2OOYA 1N3CA 1KYFA 1CDWA 4Q11A 3CWTA 3EIKA 1YQRA 1EUVA 2D0CA 3PDKA 4WXAA 1QNCA 2NOZA 3PMGA 1VTLE 3OC3C 3C04A 1Q9UA 5BMNA 5IYCP 2I5WA 1KY7A 2FUVA 4PY5A 1E42A 1P5GX 3ULXA 4WZSD 2DKCA 2HKPA 5JMVD 1K35A 1D3UA 4DULA 1JFIC 3HS8A 1JDYA 3CW7A 2IV9A 4WX8A 3HS9A 1QN9A 1VOKA 4IL8A 3UW2A 1C4GA 1KFQA 1TUOA 3OH6A 1AISA 2QR1A 1J3MA 5F9CA 3CWSA 2NOFA 1QNBA 4EJYA 1QTPA 3D7QA 1QN6A 2MZ8A 1YQMA 2FKFA 1KO9A 1T6AA 2QREA 3CVSA 3I0WA 3CWUA 1LWWA 1W80A 2F7LA 4I8OA 4EAKA 3ASMA 2XHIA 4EAIA 3F0ZA 1YTBA 1QN7A 2Y8LA 1YQKA 1K2YX 1MP9A 3I0XA 4ROCB 3H1ZA 5IYDP 4EAGA 2FKMX 1WJWA 3OCIA 3SNSA 1M3HA 1N39A 2JOIA 1UL7A 1C9BB 2V9JA 1UT7A 1QN3A 1QN8A 2MJ7A 2QLVA 3N89A 4D7RA 1XSZA 4EJZA 2OOXA 2LAEA 2JHNA 2V8QA 2HZMA 3DPUA 3KTUA 1QNAA 1M5Q1 2ZFDB 2QRCA 1KFIA 3VN5A 2NOIA 3T4NA 3CVTA 2HZSA 2YA3A 1TBAB 1VKLA 1LXTA 2VJ0A 4B0AA 3I3WA 3EAYA 1M3QA 2H5AX 1DIZA 2H4LX 3TE5A 4BJUA 4EAJA 1PCMX 3ENCA 1VOLB 4C7PA 1QTSA 2DKDA 2D0AA 1WQAA 3BKQX 4D7QA 3RPJA 3OGDA 2JPIA 3DPTA 3RSMA 2NOBA 2NOLA 1PVSA 2IV8A 1NVPA 3NA5A 2JHJA
chains in the Genus database with same CATH topology

3IH7A 1R4XA 1PCZA 5IYBP 3F10A 1QN5A 4TPSA 2O3OA 1YTFA 2YH5A 1QN4A 2D0BA 2FGTA 1QNEA 2NOHA 1KYUA 3OSMA 1PZDA 5AN4A 1NGMA 1B9KA 1EBMA 2Z8UA 3KRMA 1LWVA 1YQLA 1KYDA 1NH2A 2NOEA 1UT4A 1LWYA 1RM1A 1FN7A 4ROEB 1TBPA 1KY6A 1VTOA 2G30A 1HU0A 4RODB 1TGHA 1N3AA 3OSTA 1N3CA 1KYFA 1CDWA 4Q11A 3EIKA 1YQRA 2D0CA 2NOZA 1QNCA 1VTLE 3OC3C 5IYCP 2I5WA 1KY7A 4PY5A 1E42A 3ULXA 4WZSD 1D3UA 4DULA 1JFIC 3HS8A 2IV9A 3HS9A 1QN9A 1VOKA 1AISA 2NOFA 1QNBA 4EJYA 1QTPA 1QN6A 2MZ8A 1YQMA 1KO9A 3I0WA 1LWWA 1W80A 4I8OA 3ASMA 2XHIA 3F0ZA 1YTBA 1QN7A 1YQKA 1MP9A 3I0XA 4ROCB 3H1ZA 5IYDP 1M3HA 3OCIA 3SNSA 1N39A 2JOIA 1C9BB 1QN3A 1UT7A 1QN8A 2MJ7A 3N89A 4EJZA 2LAEA 2HZMA 3DPUA 3KTUA 1QNAA 3VN5A 2NOIA 2HZSA 1TBAB 2VJ0A 4B0AA 1M3QA 1VOLB 1QTSA 2D0AA 3RPJA 2NOBA 3DPTA 2NOLA 2IV8A 1NVPA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1R4X A;  1JFI C;  1PCZ A;  3HS8 A;  5IYB P;  1C9B B;  1QN3 A;  2MJ7 A;  1QN8 A;  1QN5 A;  2IV9 A;  4ROE B;  3HS9 A;  1TBP A;  1QN9 A;  1YTF A;  1VOK A;  1QN4 A;  1QNA A;  1KY6 A;  2D0B A;  2G30 A;  1VTO A;  3VN5 A;  1KYU A;  4ROD B;  1AIS A;  1QNE A;  1TGH A;  1TBA B;  1PZD A;  1QNB A;  1NGM A;  1B9K A;  1KYF A;  2VJ0 A;  1QTP A;  4B0A A;  1CDW A;  1QN6 A;  3EIK A;  2Z8U A;  2D0C A;  1QNC A;  1VOL B;  1VTL E;  3OC3 C;  5IYC P;  1W80 A;  1QTS A;  1KY7 A;  4PY5 A;  3ASM A;  1E42 A;  1YTB A;  1QN7 A;  2D0A A;  1KYD A;  1MP9 A;  4WZS D;  1NH2 A;  4ROC B;  2IV8 A;  1NVP A;  3H1Z A;  1D3U A;  5IYD P;  1RM1 A;  3OCI A; 
#chains in the Genus database with same CATH topology
 3IH7 A;  1R4X A;  2NVM A;  1PCZ A;  5IYB P;  2Z0F A;  3CWA A;  4HJH A;  5EPC A;  3F10 A;  1QN5 A;  2QRD A;  4TPS A;  2NWV A;  3OLP A;  5JN5 A;  3OH9 A;  2O3O A;  3ENO C;  1YTF A;  2YH5 A;  1QN4 A;  2HL9 A;  2D0B A;  4QG5 A;  2FGT A;  1QNE A;  3D4V A;  1KYU A;  2NOH A;  1MPG A;  3OSM A;  2DKA A;  1PZD A;  5AN4 A;  1NGM A;  4MRQ A;  1B9K A;  1EBM A;  2Z8U A;  2R5X A;  4EAL A;  2V92 A;  1V5S A;  3KRM A;  1C47 A;  1LWV A;  3TDH A;  1YQL A;  1KYD A;  5KL0 A;  1NH2 A;  2NOE A;  1UT4 A;  2Y8Q A;  5HSH A;  1LWY A;  1RM1 A;  1FN7 A;  3OSE A;  5BMP A;  4ROE B;  2EHB D;  4CFF A;  2NLV A;  2HL8 A;  1TBP A;  1P5D X;  1KY6 A;  1VTO A;  1PCJ X;  2G30 A;  4ROD B;  1HU0 A;  1TGH A;  1N3A A;  3OST A;  2PWW A;  2OOY A;  1N3C A;  1KYF A;  1CDW A;  4Q11 A;  3CWT A;  3EIK A;  1YQR A;  1EUV A;  2D0C A;  3PDK A;  4WXA A;  1QNC A;  2NOZ A;  3PMG A;  1VTL E;  3OC3 C;  3C04 A;  1Q9U A;  5BMN A;  5IYC P;  2I5W A;  1KY7 A;  2FUV A;  4PY5 A;  1E42 A;  1P5G X;  3ULX A;  4WZS D;  2DKC A;  2HKP A;  5JMV D;  1K35 A;  1D3U A;  4DUL A;  1JFI C;  3HS8 A;  1JDY A;  3CW7 A;  2IV9 A;  4WX8 A;  3HS9 A;  1QN9 A;  1VOK A;  4IL8 A;  3UW2 A;  1C4G A;  1KFQ A;  1TUO A;  3OH6 A;  1AIS A;  2QR1 A;  1J3M A;  5F9C A;  3CWS A;  2NOF A;  1QNB A;  4EJY A;  1QTP A;  3D7Q A;  1QN6 A;  2MZ8 A;  1YQM A;  2FKF A;  1KO9 A;  1T6A A;  2QRE A;  3CVS A;  3I0W A;  3CWU A;  1LWW A;  1W80 A;  2F7L A;  4I8O A;  4EAK A;  3ASM A;  2XHI A;  4EAI A;  3F0Z A;  1YTB A;  1QN7 A;  2Y8L A;  1YQK A;  1K2Y X;  1MP9 A;  3I0X A;  4ROC B;  3H1Z A;  5IYD P;  4EAG A;  2FKM X;  1WJW A;  3OCI A;  3SNS A;  1M3H A;  1N39 A;  2JOI A;  1UL7 A;  1C9B B;  2V9J A;  1UT7 A;  1QN3 A;  1QN8 A;  2MJ7 A;  2QLV A;  3N89 A;  4D7R A;  1XSZ A;  4EJZ A;  2OOX A;  2LAE A;  2JHN A;  2V8Q A;  2HZM A;  3DPU A;  3KTU A;  1QNA A;  1M5Q 1;  2ZFD B;  2QRC A;  1KFI A;  3VN5 A;  2NOI A;  3T4N A;  3CVT A;  2HZS A;  2YA3 A;  1TBA B;  1VKL A;  1LXT A;  2VJ0 A;  4B0A A;  3I3W A;  3EAY A;  1M3Q A;  2H5A X;  1DIZ A;  2H4L X;  3TE5 A;  4BJU A;  4EAJ A;  1PCM X;  3ENC A;  1VOL B;  4C7P A;  1QTS A;  2DKD A;  2D0A A;  1WQA A;  3BKQ X;  4D7Q A;  3RPJ A;  3OGD A;  2JPI A;  3DPT A;  3RSM A;  2NOB A;  2NOL A;  1PVS A;  2IV8 A;  1NVP A;  3NA5 A;  2JHJ A; 
#chains in the Genus database with same CATH homology
 3IH7 A;  1R4X A;  1PCZ A;  5IYB P;  3F10 A;  1QN5 A;  4TPS A;  2O3O A;  1YTF A;  2YH5 A;  1QN4 A;  2D0B A;  2FGT A;  1QNE A;  2NOH A;  1KYU A;  3OSM A;  1PZD A;  5AN4 A;  1NGM A;  1B9K A;  1EBM A;  2Z8U A;  3KRM A;  1LWV A;  1YQL A;  1KYD A;  1NH2 A;  2NOE A;  1UT4 A;  1LWY A;  1RM1 A;  1FN7 A;  4ROE B;  1TBP A;  1KY6 A;  1VTO A;  2G30 A;  1HU0 A;  4ROD B;  1TGH A;  1N3A A;  3OST A;  1N3C A;  1KYF A;  1CDW A;  4Q11 A;  3EIK A;  1YQR A;  2D0C A;  2NOZ A;  1QNC A;  1VTL E;  3OC3 C;  5IYC P;  2I5W A;  1KY7 A;  4PY5 A;  1E42 A;  3ULX A;  4WZS D;  1D3U A;  4DUL A;  1JFI C;  3HS8 A;  2IV9 A;  3HS9 A;  1QN9 A;  1VOK A;  1AIS A;  2NOF A;  1QNB A;  4EJY A;  1QTP A;  1QN6 A;  2MZ8 A;  1YQM A;  1KO9 A;  3I0W A;  1LWW A;  1W80 A;  4I8O A;  3ASM A;  2XHI A;  3F0Z A;  1YTB A;  1QN7 A;  1YQK A;  1MP9 A;  3I0X A;  4ROC B;  3H1Z A;  5IYD P;  1M3H A;  3OCI A;  3SNS A;  1N39 A;  2JOI A;  1C9B B;  1QN3 A;  1UT7 A;  1QN8 A;  2MJ7 A;  3N89 A;  4EJZ A;  2LAE A;  2HZM A;  3DPU A;  3KTU A;  1QNA A;  3VN5 A;  2NOI A;  2HZS A;  1TBA B;  2VJ0 A;  4B0A A;  1M3Q A;  1VOL B;  1QTS A;  2D0A A;  3RPJ A;  2NOB A;  3DPT A;  2NOL A;  2IV8 A;  1NVP A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1QNAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations