The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
133
|
structure length |
133
|
Chain Sequence |
MTLPSGHPKSRLIKKFTALGPYIREGQCEDNRFFFDCLAVCVNVKPAPEKREFWGWWMELEAQEKRFTYRYQFGLFDKEGNWTVVPINETEVVERLEYTLREFHEKLRDLLISMELALEPSDDFNDEPVKLSA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transcription regulator
|
| source organism |
Salmonella enterica subsp. enterica serovar typhimurium str. lt2
|
| publication title |
Binding interface between the Salmonella sigma (S)/RpoS subunit of RNA polymerase and Crl: hints from bacterial species lacking crl.
pubmed doi rcsb |
| molecule keywords |
Sigma factor-binding protein Crl
|
| total genus |
22
|
| structure length |
133
|
| sequence length |
133
|
| ec nomenclature | |
| pdb deposition date | 2015-02-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07417 | Crl | Sigma factor-binding transcriptional regulator Crl |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | TATA-Binding Protein |
#chains in the Genus database with same CATH superfamily 2MZ8 A; 4Q11 A; 3RPJ A; #chains in the Genus database with same CATH topology 1C47 A; 1YQL A; 3BKQ X; 3OCI A; 2DKC A; 1VTL E; 1NGM A; 1TUO A; 4C7P A; 1M5Q 1; 2O3O A; 3HS8 A; 1C4G A; 2JHN A; 3CVT A; 3TDH A; 3UW2 A; 3CWA A; 2QRC A; 1VOK A; 3EAY A; 1VTO A; 1QN3 A; 1CDW A; 1D3U A; 3D7Q A; 2NOZ A; 4EAI A; 3CWT A; 4D7Q A; 4ROD B; 5IYD P; 3D4V A; 1TBP A; 3OC3 C; 5IYB P; 2Y8Q A; 5BMN A; 4MRQ A; 2VJ0 A; 1QN5 A; 2H5A X; 2HKP A; 3ENO C; 3RPJ A; 3HS9 A; 3OH6 A; 1VOL B; 2NLV A; 1QN7 A; 1QNC A; 2NOI A; 1LWW A; 1YQK A; 1YQM A; 1V5S A; 2DKA A; 2G30 A; 4CFF A; 1C9B B; 4EJZ A; 2HL9 A; 1LXT A; 2YA3 A; 2FUV A; 2MZ8 A; 3DPT A; 3SNS A; 1QN9 A; 2NOH A; 2FKF A; 4IL8 A; 2F7L A; 1Q9U A; 3F10 A; 1M3Q A; 4EAK A; 2NVM A; 1PVS A; 1P5D X; 2OOY A; 2D0B A; 1EBM A; 2R5X A; 3H1Z A; 4HJH A; 3OLP A; 2HZM A; 1E42 A; 3ASM A; 3I0X A; 4EAL A; 3RSM A; 1KFQ A; 2NOB A; 5F9C A; 4EAG A; 2XHI A; 1QN8 A; 2NOF A; 1HU0 A; 2HZS A; 1WQA A; 3F0Z A; 1DIZ A; 2HL8 A; 3KTU A; 3OSM A; 2QRE A; 3CW7 A; 2PWW A; 1JDY A; 2NOE A; 5IYC P; 2V8Q A; 4ROE B; 4QG5 A; 1LWV A; 1W80 A; 1TBA B; 3OST A; 4WX8 A; 2FGT A; 1QNE A; 3ENC A; 4DUL A; 2JOI A; 2Z8U A; 2MJ7 A; 2H4L X; 3KRM A; 5JN5 A; 3C04 A; 1FN7 A; 1PCM X; 2IV9 A; 1QTP A; 3DPU A; 3PDK A; 1KY7 A; 2DKD A; 3OGD A; 1KYU A; 2NWV A; 2Y8L A; 1TGH A; 1N39 A; 5BMP A; 1MP9 A; 1MPG A; 4WZS D; 1WJW A; 1QNB A; 1JFI C; 1P5G X; 1KYD A; 4B0A A; 1M3H A; 2V92 A; 2YH5 A; 1B9K A; 4EJY A; 2JHJ A; 1EUV A; 2JPI A; 4I8O A; 2QR1 A; 4BJU A; 1R4X A; 3EIK A; 4Q11 A; 2IV8 A; 3CWS A; 1KY6 A; 4EAJ A; 1AIS A; 3OH9 A; 5KL0 A; 1PCJ X; 2EHB D; 2LAE A; 3OSE A; 1T6A A; 2V9J A; 1VKL A; 2ZFD B; 1N3A A; 1YTB A; 1N3C A; 2Z0F A; 1K35 A; 2D0C A; 3I3W A; 1NVP A; 3ULX A; 1YQR A; 4D7R A; 3I0W A; 1KYF A; 1QN6 A; 5JMV D; 3PMG A; 5AN4 A; 5EPC A; 4ROC B; 1PZD A; 4PY5 A; 2FKM X; 1PCZ A; 3NA5 A; 1YTF A; 3TE5 A; 3N89 A; 1QTS A; 3VN5 A; 1LWY A; 2OOX A; 2QRD A; 3T4N A; 1KO9 A; 1XSZ A; 3IH7 A; 1UL7 A; 1NH2 A; 4WXA A; 1UT4 A; 1J3M A; 1K2Y X; 1UT7 A; 4TPS A; 3CWU A; 1QN4 A; 1QNA A; 2NOL A; 2D0A A; 1RM1 A; 2I5W A; 3CVS A; 2QLV A; 1KFI A; 5HSH A; #chains in the Genus database with same CATH homology 1YQL A; 3OCI A; 1VTL E; 1NGM A; 2O3O A; 3HS8 A; 1VOK A; 1VTO A; 1QN3 A; 1CDW A; 1D3U A; 2NOZ A; 4ROD B; 5IYD P; 1TBP A; 3OC3 C; 5IYB P; 2VJ0 A; 1QN5 A; 1VOL B; 3RPJ A; 3HS9 A; 2NOI A; 1QN7 A; 1QNC A; 1LWW A; 1YQK A; 1YQM A; 2G30 A; 1C9B B; 4EJZ A; 2MZ8 A; 3SNS A; 3DPT A; 2NOH A; 1QN9 A; 3F10 A; 1M3Q A; 2D0B A; 1EBM A; 3H1Z A; 2HZM A; 1E42 A; 3ASM A; 3I0X A; 2NOB A; 2XHI A; 1QN8 A; 2NOF A; 1HU0 A; 2HZS A; 3F0Z A; 3KTU A; 3OSM A; 2NOE A; 5IYC P; 4ROE B; 1LWV A; 1W80 A; 1TBA B; 3OST A; 2FGT A; 1QNE A; 4DUL A; 2JOI A; 2Z8U A; 2MJ7 A; 3KRM A; 1FN7 A; 2IV9 A; 1QTP A; 3DPU A; 1KY7 A; 1KYU A; 1TGH A; 1N39 A; 1MP9 A; 4WZS D; 1QNB A; 1JFI C; 1KYD A; 4B0A A; 1M3H A; 2YH5 A; 1B9K A; 4EJY A; 4I8O A; 1R4X A; 3EIK A; 4Q11 A; 2IV8 A; 1KY6 A; 1AIS A; 1N3A A; 2LAE A; 1YTB A; 1N3C A; 2D0C A; 1NVP A; 3ULX A; 1YQR A; 3I0W A; 1KYF A; 1QN6 A; 5AN4 A; 4ROC B; 1PZD A; 4PY5 A; 1PCZ A; 1YTF A; 3N89 A; 1QTS A; 3VN5 A; 1LWY A; 1KO9 A; 3IH7 A; 1NH2 A; 1UT4 A; 1QNA A; 1UT7 A; 4TPS A; 1QN4 A; 2NOL A; 2D0A A; 1RM1 A; 2I5W A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
