The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
34
|
sequence length |
112
|
structure length |
112
|
Chain Sequence |
GMDKLVKYQELVKKLLTNYASDDVSDQDVEVQLILDTERNHYQWMNVGWQGLNRIYRCVIHFDIKDGKIWLQQNLTDRNPAEELVMMGVPREDIVLGLQAPYKRQYTDYGVA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Site-specific recombination of nitrogen-fixation genes in cyanobacteria by XisF-XisH-XisI complex: Structures and models.
pubmed doi rcsb |
| molecule tags |
Unknown function
|
| source organism |
Anabaena variabilis
|
| molecule keywords |
XisI protein-like
|
| total genus |
34
|
| structure length |
112
|
| sequence length |
112
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2006-10-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08869 | XisI | XisI protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | XisI-like |
#chains in the Genus database with same CATH superfamily 2NWV A; 2NLV A; 2NVM A; 3D7Q A; #chains in the Genus database with same CATH topology 1B9K A; 3ENC A; 2EHB D; 3OST A; 3RSM A; 3OH9 A; 2FGT A; 2HL8 A; 4WX8 A; 1LWW A; 5IYC P; 1YQM A; 1YTF A; 2YA3 A; 1KO9 A; 4EAJ A; 4EJZ A; 2NWV A; 2NOB A; 1YQL A; 3H1Z A; 1VTL E; 1TGH A; 2DKC A; 1PVS A; 4C7P A; 1N3C A; 2H5A X; 3EAY A; 1QTP A; 2PWW A; 2H4L X; 2NOF A; 2NVM A; 1HU0 A; 2OOY A; 5KL0 A; 1UT4 A; 2Y8L A; 1TBP A; 3ASM A; 4HJH A; 3CWU A; 1QN8 A; 3VN5 A; 1NGM A; 1KY7 A; 4ROE B; 4D7Q A; 1WJW A; 1QN5 A; 1YQK A; 5IYD P; 2F7L A; 3I0W A; 4DUL A; 3HS9 A; 5JMV D; 1VTO A; 1EUV A; 1UT7 A; 2QR1 A; 1LWV A; 4EAK A; 1R4X A; 4WXA A; 1QNE A; 1VOL B; 1QN3 A; 4TPS A; 2OOX A; 5JN5 A; 2V92 A; 3TDH A; 2D0B A; 2MJ7 A; 3OGD A; 4EAI A; 1TUO A; 2JHN A; 2Z0F A; 2JOI A; 2QLV A; 3CVT A; 1MPG A; 1V5S A; 3OH6 A; 2YH5 A; 1LXT A; 3ENO C; 3D4V A; 4BJU A; 1N39 A; 1EBM A; 3KRM A; 1Q9U A; 4ROC B; 1KFI A; 2VJ0 A; 1RM1 A; 1N3A A; 5IYB P; 1J3M A; 1QN9 A; 2D0C A; 2Z8U A; 1QN7 A; 4PY5 A; 1PCZ A; 1W80 A; 3BKQ X; 3CWS A; 1M3Q A; 1C47 A; 2FUV A; 5BMN A; 3RPJ A; 2QRE A; 1C9B B; 3F10 A; 3D7Q A; 1VKL A; 3F0Z A; 2O3O A; 3IH7 A; 1M3H A; 4MRQ A; 2V8Q A; 1PZD A; 2NOZ A; 2D0A A; 3NA5 A; 4D7R A; 2DKA A; 2NLV A; 1KYD A; 3UW2 A; 3N89 A; 4Q11 A; 1NVP A; 5EPC A; 2R5X A; 4EJY A; 1QNC A; 2HL9 A; 2V9J A; 5HSH A; 2MZ8 A; 4IL8 A; 2NOE A; 1P5G X; 3OSM A; 1K35 A; 1AIS A; 1QTS A; 4I8O A; 2DKD A; 4EAG A; 1M5Q 1; 1LWY A; 1TBA B; 2LAE A; 1PCJ X; 1KFQ A; 1PCM X; 3DPT A; 1KYU A; 1WQA A; 2FKM X; 3DPU A; 1KY6 A; 3HS8 A; 4CFF A; 3I0X A; 3EIK A; 2Y8Q A; 3OSE A; 1MP9 A; 4ROD B; 3CWA A; 2HZM A; 1XSZ A; 3PMG A; 1KYF A; 1QN6 A; 2QRC A; 2FKF A; 5AN4 A; 1UL7 A; 1C4G A; 4EAL A; 1QNA A; 3I3W A; 1JDY A; 1K2Y X; 1FN7 A; 1YQR A; 4B0A A; 1YTB A; 3OC3 C; 2I5W A; 1QN4 A; 2NOL A; 1JFI C; 2JHJ A; 1DIZ A; 2HKP A; 2XHI A; 3OCI A; 2JPI A; 5F9C A; 2IV8 A; 3KTU A; 3SNS A; 3CW7 A; 2IV9 A; 3OLP A; 1T6A A; 1E42 A; 3ULX A; 1D3U A; 2HZS A; 3TE5 A; 4WZS D; 4QG5 A; 3C04 A; 3T4N A; 2QRD A; 1NH2 A; 3CWT A; 3PDK A; 1P5D X; 1CDW A; 5BMP A; 1QNB A; 2NOI A; 2NOH A; 2ZFD B; 1VOK A; 2G30 A; 3CVS A; #chains in the Genus database with same CATH homology 2NWV A; 2NLV A; 2NVM A; 3D7Q A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
