2NVM | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	117
structure length	104
Chain Sequence	DKLTHYRHTIQEIIKKYYDLSNSLPDTVGDRLIIDEQRDQYLWLCCGWDGKKRVQHIILYLQIQNGKIWIEEDSTNLAIVDEMLVAGIPQTDIILGFHHPSKRG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 104 atoms

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104 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics/unknown function
source organism	Anabaena variabilis atcc 29413
publication title	Site-specific recombination of nitrogen-fixation genes in cyanobacteria by XisF-XisH-XisI complex: Structures and models. pubmed doi rcsb
molecule keywords	FdxN element excision controlling factor XisI
total genus	28
structure length	104
sequence length	117
chains with identical sequence	B
ec nomenclature
pdb deposition date	2006-11-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08869	XisI	XisI protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.110	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	XisI-like	2nvmA00

3D7QA 2NVMA 2NLVA 2NWVA
chains in the Genus database with same CATH superfamily

2D0CA 1JFIC 1AISA 2HL9A 3KRMA 3OGDA 2HL8A 2QRDA 1C47A 2I5WA 2FKFA 4I8OA 3OCIA 2VJ0A 2IV8A 2O3OA 4TPSA 3T4NA 3PDKA 3ENOC 1C4GA 2QREA 3HS9A 1LWWA 1QNCA 3EAYA 3OSEA 1QNBA 4EALA 4QG5A 1KY6A 4EAGA 3RPJA 2NOZA 2NOBA 2Y8LA 2Z8UA 4BJUA 2JHNA 1PCZA 3DPTA 3EIKA 3TE5A 1DIZA 4EJZA 3CVSA 2H4LX 3I0XA 1C9BB 1TBAB 1NH2A 2Z0FA 3CWTA 2JOIA 3NA5A 2OOXA 1UT7A 4EAIA 3CWUA 3SNSA 1YQLA 3KTUA 2MZ8A 3D4VA 4WZSD 3OC3C 3F0ZA 2DKAA 2G30A 1J3MA 4EJYA 3CWAA 1YTFA 1VOKA 1E42A 1KYUA 5IYBP 2DKDA 2EHBD 2YH5A 4ROCB 1RM1A 3I3WA 1YQRA 1LXTA 5F9CA 3VN5A 4D7RA 1M3QA 1QN5A 1P5GX 3OLPA 5HSHA 3UW2A 1B9KA 2NVMA 2NOEA 2NLVA 2NOHA 3ENCA 1QTPA 1LWVA 1MP9A 1CDWA 1WQAA 2OOYA 4IL8A 1M3HA 1QN3A 1P5DX 2HZSA 2ZFDB 3CWSA 2YA3A 1T6AA 5EPCA 3OH9A 1HU0A 1QN9A 5IYCP 5KL0A 1KYFA 1TUOA 1VKLA 1FN7A 1Q9UA 4CFFA 4C7PA 2D0AA 1KY7A 1QNEA 4MRQA 1TGHA 2FGTA 3PMGA 3IH7A 2JHJA 1QTSA 2F7LA 2LAEA 1K35A 2V92A 4Q11A 4WX8A 5JMVD 2FKMX 3H1ZA 3CVTA 1TBPA 4DULA 1K2YX 1EUVA 1UL7A 1XSZA 1M5Q1 2HZMA 2IV9A 3RSMA 2Y8QA 3HS8A 1N3CA 4HJHA 1EBMA 2V8QA 2PWWA 1KFQA 1YQMA 1QN6A 1QN8A 2MJ7A 3F10A 2QRCA 1PZDA 1NVPA 2NWVA 1R4XA 1QN4A 1NGMA 1KYDA 3ASMA 3OH6A 4B0AA 1N3AA 2QLVA 1LWYA 1N39A 2NOFA 4EAJA 1VOLB 5JN5A 3OSMA 1V5SA 1WJWA 3CW7A 3C04A 1VTLE 3OSTA 1QNAA 2HKPA 1KFIA 3TDHA 2JPIA 4WXAA 2XHIA 2NOIA 4RODB 1MPGA 1UT4A 2H5AX 3DPUA 1KO9A 1PCJX 1QN7A 5AN4A 4EAKA 2D0BA 5IYDP 4PY5A 2R5XA 1PCMX 3N89A 2DKCA 4D7QA 3I0WA 1D3UA 5BMNA 2NOLA 1JDYA 1YQKA 3BKQX 3D7QA 3ULXA 2QR1A 1PVSA 4ROEB 2FUVA 1W80A 1VTOA 2V9JA 5BMPA 1YTBA
chains in the Genus database with same CATH topology

3D7QA 2NVMA 2NLVA 2NWVA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3D7Q A;  2NVM A;  2NLV A;  2NWV A; 
#chains in the Genus database with same CATH topology
 2D0C A;  1JFI C;  1AIS A;  2HL9 A;  3KRM A;  3OGD A;  2HL8 A;  2QRD A;  1C47 A;  2I5W A;  2FKF A;  4I8O A;  3OCI A;  2VJ0 A;  2IV8 A;  2O3O A;  4TPS A;  3T4N A;  3PDK A;  3ENO C;  1C4G A;  2QRE A;  3HS9 A;  1LWW A;  1QNC A;  3EAY A;  3OSE A;  1QNB A;  4EAL A;  4QG5 A;  1KY6 A;  4EAG A;  3RPJ A;  2NOZ A;  2NOB A;  2Y8L A;  2Z8U A;  4BJU A;  2JHN A;  1PCZ A;  3DPT A;  3EIK A;  3TE5 A;  1DIZ A;  4EJZ A;  3CVS A;  2H4L X;  3I0X A;  1C9B B;  1TBA B;  1NH2 A;  2Z0F A;  3CWT A;  2JOI A;  3NA5 A;  2OOX A;  1UT7 A;  4EAI A;  3CWU A;  3SNS A;  1YQL A;  3KTU A;  2MZ8 A;  3D4V A;  4WZS D;  3OC3 C;  3F0Z A;  2DKA A;  2G30 A;  1J3M A;  4EJY A;  3CWA A;  1YTF A;  1VOK A;  1E42 A;  1KYU A;  5IYB P;  2DKD A;  2EHB D;  2YH5 A;  4ROC B;  1RM1 A;  3I3W A;  1YQR A;  1LXT A;  5F9C A;  3VN5 A;  4D7R A;  1M3Q A;  1QN5 A;  1P5G X;  3OLP A;  5HSH A;  3UW2 A;  1B9K A;  2NVM A;  2NOE A;  2NLV A;  2NOH A;  3ENC A;  1QTP A;  1LWV A;  1MP9 A;  1CDW A;  1WQA A;  2OOY A;  4IL8 A;  1M3H A;  1QN3 A;  1P5D X;  2HZS A;  2ZFD B;  3CWS A;  2YA3 A;  1T6A A;  5EPC A;  3OH9 A;  1HU0 A;  1QN9 A;  5IYC P;  5KL0 A;  1KYF A;  1TUO A;  1VKL A;  1FN7 A;  1Q9U A;  4CFF A;  4C7P A;  2D0A A;  1KY7 A;  1QNE A;  4MRQ A;  1TGH A;  2FGT A;  3PMG A;  3IH7 A;  2JHJ A;  1QTS A;  2F7L A;  2LAE A;  1K35 A;  2V92 A;  4Q11 A;  4WX8 A;  5JMV D;  2FKM X;  3H1Z A;  3CVT A;  1TBP A;  4DUL A;  1K2Y X;  1EUV A;  1UL7 A;  1XSZ A;  1M5Q 1;  2HZM A;  2IV9 A;  3RSM A;  2Y8Q A;  3HS8 A;  1N3C A;  4HJH A;  1EBM A;  2V8Q A;  2PWW A;  1KFQ A;  1YQM A;  1QN6 A;  1QN8 A;  2MJ7 A;  3F10 A;  2QRC A;  1PZD A;  1NVP A;  2NWV A;  1R4X A;  1QN4 A;  1NGM A;  1KYD A;  3ASM A;  3OH6 A;  4B0A A;  1N3A A;  2QLV A;  1LWY A;  1N39 A;  2NOF A;  4EAJ A;  1VOL B;  5JN5 A;  3OSM A;  1V5S A;  1WJW A;  3CW7 A;  3C04 A;  1VTL E;  3OST A;  1QNA A;  2HKP A;  1KFI A;  3TDH A;  2JPI A;  4WXA A;  2XHI A;  2NOI A;  4ROD B;  1MPG A;  1UT4 A;  2H5A X;  3DPU A;  1KO9 A;  1PCJ X;  1QN7 A;  5AN4 A;  4EAK A;  2D0B A;  5IYD P;  4PY5 A;  2R5X A;  1PCM X;  3N89 A;  2DKC A;  4D7Q A;  3I0W A;  1D3U A;  5BMN A;  2NOL A;  1JDY A;  1YQK A;  3BKQ X;  3D7Q A;  3ULX A;  2QR1 A;  1PVS A;  4ROE B;  2FUV A;  1W80 A;  1VTO A;  2V9J A;  5BMP A;  1YTB A; 
#chains in the Genus database with same CATH homology
 3D7Q A;  2NVM A;  2NLV A;  2NWV A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2NVMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations