2PWWA

Crystal structure of abc2387 from bacillus clausii
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
115
structure length
115
Chain Sequence
SLKFPDTGLEEKEVAFSIVNHAAKSLGFIHVDQWDYERVMFDYKIVHHEGTFYLRVPAYAVKGEIPRPSTIVQIMTPILGKYYYPHGVEYEGETFPQAVIDKCNNKLALLAKTIK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (1-2)TIV2 (88-91)EMPTYTI1 (3-6)TI2 (7-10)S5 (70-72)S2 (13-14)S4 (49-61)O1 (30-32)TI3 (34-37)S3 (37-46)TVIa1 (63-66)TI4 (46-49)S6 (77-80)TVIa2 (82-85)TI6 (83-86)AH1 (15-25)TI5 (66-69)AH2 (96-113)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Bacillus clausii
publication title Crystal structure of ABC2387 from Bacillus clausii.
rcsb
molecule keywords Uncharacterized protein
total genus 29
structure length 115
sequence length 115
ec nomenclature
pdb deposition date 2007-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08868 YugN YugN-like family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.100 Alpha Beta 2-Layer Sandwich TATA-Binding Protein YugN-like 2pwwA00
2PWWA 2R5XA
chains in the Genus database with same CATH superfamily
2HKPA 2VJ0A 1YQRA 1YQMA 2Y8QA 1WQAA 4RODB 1K35A 2D0BA 1XSZA 2DKCA 4EAIA 1QNEA 4DULA 4MRQA 4CFFA 3ULXA 3ASMA 1K2YX 1KY6A 1EUVA 3HS8A 2NOBA 1QN9A 4IL8A 2H5AX 1J3MA 2V92A 5IYBP 3CWSA 2XHIA 1E42A 4ROEB 1N39A 1N3AA 3TDHA 1M3HA 1KFIA 3D7QA 3IH7A 1QTSA 1QNBA 3CVSA 1C4GA 2QRDA 2Z0FA 2QLVA 4WZSD 1QN7A 1VOKA 1P5DX 3PMGA 3KRMA 1TUOA 1VKLA 3I0WA 1PZDA 4D7RA 2FKFA 1M3QA 2NVMA 3N89A 1YTBA 1QN8A 2YA3A 2D0CA 4D7QA 1VOLB 1RM1A 3OSEA 5JN5A 1C47A 2G30A 1V5SA 1AISA 2NWVA 2NLVA 4I8OA 4QG5A 2OOXA 2OOYA 2JPIA 3SNSA 1UL7A 1YTFA 1NH2A 1LWYA 1P5GX 4WXAA 3OGDA 1C9BB 2QREA 2HL9A 3DPTA 5BMNA 2V8QA 1DIZA 2NOLA 2NOIA 3I0XA 3CVTA 1MPGA 3RPJA 1R4XA 4Q11A 3KTUA 1NVPA 3OSTA 1LWVA 2Y8LA 3ENOC 3OCIA 4WX8A 5HSHA 2NOEA 1PCZA 3UW2A 2I5WA 1LWWA 2IV8A 2DKAA 4EALA 1VTOA 2HL8A 5EPCA 5BMPA 2LAEA 4BJUA 5IYCP 2NOHA 1PVSA 1FN7A 1NGMA 3OH9A 1TGHA 1N3CA 1QTPA 2HZMA 4HJHA 1QN6A 3OH6A 4EJZA 5JMVD 3CWTA 3CW7A 3CWAA 3EAYA 4ROCB 3F10A 3C04A 1JFIC 1QNAA 3DPUA 2MJ7A 3OLPA 4PY5A 1CDWA 1TBAB 3VN5A 2D0AA 3H1ZA 2F7LA 2HZSA 2V9JA 3I3WA 1WJWA 1YQKA 1UT7A 2H4LX 2QR1A 3D4VA 2FGTA 3PDKA 1EBMA 2YH5A 4EAKA 3F0ZA 1VTLE 2NOZA 3TE5A 1UT4A 1KYFA 2R5XA 2IV9A 2O3OA 1HU0A 1B9KA 1LXTA 2DKDA 4C7PA 3CWUA 1PCMX 2ZFDB 1QNCA 1KFQA 2FKMX 1KO9A 3OSMA 1QN3A 1KY7A 3NA5A 4EJYA 3RSMA 3BKQX 1QN4A 1TBPA 4EAJA 2MZ8A 3OC3C 2JHJA 2JHNA 2QRCA 1KYUA 5IYDP 1QN5A 5AN4A 2EHBD 4B0AA 1PCJX 5F9CA 1D3UA 2Z8UA 3T4NA 2NOFA 1Q9UA 4EAGA 1MP9A 1KYDA 3EIKA 2FUVA 3ENCA 3HS9A 1YQLA 4TPSA 5KL0A 1W80A 1T6AA 2JOIA 1M5Q1 2PWWA 1JDYA
chains in the Genus database with same CATH topology
2PWWA 2R5XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PWW A;  2R5X A; 
#chains in the Genus database with same CATH topology
 2HKP A;  2VJ0 A;  1YQR A;  1YQM A;  2Y8Q A;  1WQA A;  4ROD B;  1K35 A;  2D0B A;  1XSZ A;  2DKC A;  4EAI A;  1QNE A;  4DUL A;  4MRQ A;  4CFF A;  3ULX A;  3ASM A;  1K2Y X;  1KY6 A;  1EUV A;  3HS8 A;  2NOB A;  1QN9 A;  4IL8 A;  2H5A X;  1J3M A;  2V92 A;  5IYB P;  3CWS A;  2XHI A;  1E42 A;  4ROE B;  1N39 A;  1N3A A;  3TDH A;  1M3H A;  1KFI A;  3D7Q A;  3IH7 A;  1QTS A;  1QNB A;  3CVS A;  1C4G A;  2QRD A;  2Z0F A;  2QLV A;  4WZS D;  1QN7 A;  1VOK A;  1P5D X;  3PMG A;  3KRM A;  1TUO A;  1VKL A;  3I0W A;  1PZD A;  4D7R A;  2FKF A;  1M3Q A;  2NVM A;  3N89 A;  1YTB A;  1QN8 A;  2YA3 A;  2D0C A;  4D7Q A;  1VOL B;  1RM1 A;  3OSE A;  5JN5 A;  1C47 A;  2G30 A;  1V5S A;  1AIS A;  2NWV A;  2NLV A;  4I8O A;  4QG5 A;  2OOX A;  2OOY A;  2JPI A;  3SNS A;  1UL7 A;  1YTF A;  1NH2 A;  1LWY A;  1P5G X;  4WXA A;  3OGD A;  1C9B B;  2QRE A;  2HL9 A;  3DPT A;  5BMN A;  2V8Q A;  1DIZ A;  2NOL A;  2NOI A;  3I0X A;  3CVT A;  1MPG A;  3RPJ A;  1R4X A;  4Q11 A;  3KTU A;  1NVP A;  3OST A;  1LWV A;  2Y8L A;  3ENO C;  3OCI A;  4WX8 A;  5HSH A;  2NOE A;  1PCZ A;  3UW2 A;  2I5W A;  1LWW A;  2IV8 A;  2DKA A;  4EAL A;  1VTO A;  2HL8 A;  5EPC A;  5BMP A;  2LAE A;  4BJU A;  5IYC P;  2NOH A;  1PVS A;  1FN7 A;  1NGM A;  3OH9 A;  1TGH A;  1N3C A;  1QTP A;  2HZM A;  4HJH A;  1QN6 A;  3OH6 A;  4EJZ A;  5JMV D;  3CWT A;  3CW7 A;  3CWA A;  3EAY A;  4ROC B;  3F10 A;  3C04 A;  1JFI C;  1QNA A;  3DPU A;  2MJ7 A;  3OLP A;  4PY5 A;  1CDW A;  1TBA B;  3VN5 A;  2D0A A;  3H1Z A;  2F7L A;  2HZS A;  2V9J A;  3I3W A;  1WJW A;  1YQK A;  1UT7 A;  2H4L X;  2QR1 A;  3D4V A;  2FGT A;  3PDK A;  1EBM A;  2YH5 A;  4EAK A;  3F0Z A;  1VTL E;  2NOZ A;  3TE5 A;  1UT4 A;  1KYF A;  2R5X A;  2IV9 A;  2O3O A;  1HU0 A;  1B9K A;  1LXT A;  2DKD A;  4C7P A;  3CWU A;  1PCM X;  2ZFD B;  1QNC A;  1KFQ A;  2FKM X;  1KO9 A;  3OSM A;  1QN3 A;  1KY7 A;  3NA5 A;  4EJY A;  3RSM A;  3BKQ X;  1QN4 A;  1TBP A;  4EAJ A;  2MZ8 A;  3OC3 C;  2JHJ A;  2JHN A;  2QRC A;  1KYU A;  5IYD P;  1QN5 A;  5AN4 A;  2EHB D;  4B0A A;  1PCJ X;  5F9C A;  1D3U A;  2Z8U A;  3T4N A;  2NOF A;  1Q9U A;  4EAG A;  1MP9 A;  1KYD A;  3EIK A;  2FUV A;  3ENC A;  3HS9 A;  1YQL A;  4TPS A;  5KL0 A;  1W80 A;  1T6A A;  2JOI A;  1M5Q 1;  2PWW A;  1JDY A; 
#chains in the Genus database with same CATH homology
 2PWW A;  2R5X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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