The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
29
|
sequence length |
171
|
structure length |
133
|
Chain Sequence |
YKEEDSTVSILPTSLPQIHRANMLAQGSPAASKISPLVTTRWHFGIRSRSYPLDVMGEIYIALKNLGAEWAKPSLWTIKLRWKDLMKMVIQLFQNNYLVDFKFDGWESEMSTFSAYPFLHLTTKLIMELAVNS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the heterotrimer core of Saccharomyces cerevisiae AMPK homologue SNF1.
pubmed doi rcsb |
| molecule tags |
Transferase/protein binding
|
| source organism |
Saccharomyces cerevisiae
|
| molecule keywords |
Carbon catabolite derepressing protein kinase
|
| total genus |
29
|
| structure length |
133
|
| sequence length |
171
|
| chains with identical sequence |
D
|
| ec nomenclature |
ec
2.7.11.1: Non-specific serine/threonine protein kinase. |
| pdb deposition date | 2007-07-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16579 | AdenylateSensor | Adenylate sensor of SNF1-like protein kinase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | Kinase associated domain 1, KA1 |
#chains in the Genus database with same CATH superfamily 2QR1 A; 4EAL A; 2ZFD B; 2Y8L A; 4EAK A; 3TE5 A; 4EAI A; 2Y8Q A; 2EHB D; 2OOY A; 2OOX A; 3TDH A; 1V5S A; 2QRC A; 2V92 A; 1UL7 A; 4EAG A; 4CFF A; 2QRD A; 4EAJ A; 2V8Q A; 2QRE A; 3OSE A; 2YA3 A; 2V9J A; 3T4N A; 2QLV A; #chains in the Genus database with same CATH topology 4EAL A; 3CWU A; 1KYF A; 3IH7 A; 1QN4 A; 3CW7 A; 1QTS A; 4BJU A; 2H4L X; 3NA5 A; 2F7L A; 3TE5 A; 3ENC A; 2D0A A; 3D4V A; 1QN7 A; 2I5W A; 2NOE A; 2Y8Q A; 4TPS A; 1RM1 A; 2OOY A; 2DKD A; 1EUV A; 3C04 A; 4HJH A; 1N3C A; 1AIS A; 3HS8 A; 3TDH A; 3I0X A; 1YQL A; 3CWT A; 1MP9 A; 1TUO A; 4DUL A; 1V5S A; 1TBP A; 1UL7 A; 3DPU A; 2FKF A; 3EAY A; 1DIZ A; 1EBM A; 2QRD A; 1LWY A; 1QN5 A; 2V8Q A; 1PVS A; 3PDK A; 4WX8 A; 1TBA B; 2O3O A; 3DPT A; 1C47 A; 2D0C A; 4MRQ A; 3OC3 C; 1WQA A; 4WXA A; 5IYD P; 2PWW A; 1NGM A; 4EJZ A; 1PCZ A; 1WJW A; 2Y8L A; 4B0A A; 2HL9 A; 1YQM A; 1QN8 A; 5BMN A; 2NOI A; 4EAI A; 1QNA A; 2NWV A; 3BKQ X; 1TGH A; 3CVT A; 2EHB D; 3ENO C; 5EPC A; 2VJ0 A; 2MJ7 A; 1HU0 A; 1VOL B; 2G30 A; 1VTL E; 1FN7 A; 2NOF A; 1NH2 A; 1YTB A; 4EJY A; 2NOB A; 4I8O A; 2DKC A; 2V92 A; 1N3A A; 5IYC P; 1QNE A; 1JDY A; 4Q11 A; 4CFF A; 1YTF A; 1D3U A; 2QRE A; 3OSE A; 3OLP A; 3I0W A; 1E42 A; 2YA3 A; 2YH5 A; 3T4N A; 3D7Q A; 1KYU A; 3H1Z A; 2JHN A; 3RPJ A; 5F9C A; 1NVP A; 1C4G A; 2QR1 A; 2Z0F A; 3CVS A; 5JMV D; 2ZFD B; 1LXT A; 2HZS A; 1J3M A; 1K35 A; 1KO9 A; 1LWV A; 1QN3 A; 2NOH A; 1K2Y X; 2H5A X; 2R5X A; 1YQK A; 3ULX A; 1M5Q 1; 1QN9 A; 1B9K A; 1QTP A; 3CWA A; 1N39 A; 2OOX A; 3OST A; 4PY5 A; 1PCM X; 2IV8 A; 3HS9 A; 3I3W A; 4ROC B; 1YQR A; 1P5D X; 2D0B A; 2NVM A; 3RSM A; 3UW2 A; 4EAG A; 3ASM A; 1M3Q A; 3OGD A; 1VOK A; 3OCI A; 5AN4 A; 1KYD A; 1KFQ A; 1M3H A; 2NOL A; 1T6A A; 4D7Q A; 1QNC A; 3OSM A; 3KTU A; 1PZD A; 1UT4 A; 2QLV A; 2FGT A; 2HL8 A; 3N89 A; 4IL8 A; 2DKA A; 1KFI A; 3F0Z A; 2NLV A; 3SNS A; 4WZS D; 2HZM A; 2XHI A; 1MPG A; 4ROD B; 1P5G X; 1KY6 A; 4C7P A; 5JN5 A; 4EAK A; 1LWW A; 2IV9 A; 2JHJ A; 2JPI A; 5IYB P; 3KRM A; 4QG5 A; 5HSH A; 5BMP A; 1UT7 A; 2Z8U A; 1JFI C; 2HKP A; 5KL0 A; 1QN6 A; 1PCJ X; 1KY7 A; 3F10 A; 1Q9U A; 3EIK A; 2MZ8 A; 4D7R A; 3OH9 A; 1C9B B; 2LAE A; 2QRC A; 3PMG A; 2NOZ A; 4ROE B; 1CDW A; 1VKL A; 4EAJ A; 1QNB A; 3CWS A; 1W80 A; 2FKM X; 2V9J A; 3VN5 A; 1VTO A; 1XSZ A; 3OH6 A; 1R4X A; 2FUV A; 2JOI A; #chains in the Genus database with same CATH homology 2QR1 A; 4EAL A; 2ZFD B; 2Y8L A; 4EAK A; 3TE5 A; 4EAI A; 2Y8Q A; 2EHB D; 2OOY A; 2OOX A; 3TDH A; 1V5S A; 2QRC A; 2V92 A; 1UL7 A; 4EAG A; 4CFF A; 2QRD A; 4EAJ A; 2V8Q A; 2QRE A; 3OSE A; 2YA3 A; 2V9J A; 3T4N A; 2QLV A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
