2QRDA

Crystal structure of the adenylate sensor from amp-activated protein kinase in complex with adp and atp
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
127
structure length
114
Chain Sequence
NKWHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFMLDVKSNGYKDIYSKSSFPFLDLCAMLVCKLFSA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Schizosaccharomyces pombe
publication title Structural Insight into AMPK Regulation: ADP Comes into Play.
pubmed doi rcsb
molecule keywords SNF1-like protein kinase ssp2
total genus 29
structure length 114
sequence length 127
chains with identical sequence C
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2007-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16579 AdenylateSensor Adenylate sensor of SNF1-like protein kinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.80 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Kinase associated domain 1, KA1 2qrdA00
1V5SA 4CFFA 2ZFDB 1UL7A 2OOYA 2EHBD 4EAJA 4EAIA 4EAGA 2QR1A 2V8QA 4EAKA 2V9JA 2V92A 3OSEA 2Y8QA 2QRCA 2QRDA 3TDHA 2Y8LA 2OOXA 4EALA 2QREA 2QLVA 2YA3A 3T4NA 3TE5A
chains in the Genus database with same CATH superfamily
1WJWA 2NLVA 4CFFA 2HZMA 1W80A 1YQKA 3ASMA 4WZSD 2OOYA 1N3CA 2NOLA 2PWWA 1M3HA 3PMGA 2I5WA 1UT4A 1DIZA 4I8OA 4HJHA 2V8QA 3CW7A 2V9JA 3C04A 1N3AA 3VN5A 4QG5A 2JHNA 3OSEA 3F10A 4ROCB 1YQMA 1QNBA 1JDYA 1KYUA 1KYDA 5BMPA 1AISA 1TGHA 3OCIA 1QTSA 2NOEA 2QRDA 3IH7A 2FUVA 2XHIA 2Y8LA 1VOLB 4DULA 1T6AA 2G30A 3OGDA 2FGTA 2QLVA 2HZSA 4BJUA 1RM1A 3T4NA 3ULXA 3OH9A 3BKQX 1KO9A 1R4XA 2DKAA 3D7QA 2HL8A 2D0BA 1LWYA 1N39A 1LXTA 4WX8A 5EPCA 1UL7A 2R5XA 5KL0A 3CWAA 1CDWA 2NOIA 3OC3C 2FKFA 1LWWA 1PCMX 4B0AA 3CWSA 4EAKA 3CVTA 2NVMA 4ROEB 2H5AX 1NGMA 2Y8QA 3I0WA 1YQRA 1NVPA 1KY7A 2QRCA 1KFQA 4C7PA 1YTBA 3DPUA 1M3QA 1KFIA 1C4GA 1EBMA 5IYDP 4EALA 1QN9A 1PVSA 1WQAA 1P5GX 1D3UA 3UW2A 4WXAA 4D7RA 2DKDA 1KY6A 2YH5A 3OSTA 1QN6A 2IV8A 2NOHA 3SNSA 1MPGA 1YTFA 1M5Q1 3HS8A 1NH2A 5F9CA 1B9KA 1C9BB 1PCJX 2NOZA 3I0XA 1QTPA 1QNEA 4EAGA 3OLPA 4TPSA 4RODB 1MP9A 2V92A 1QN8A 2DKCA 1QN5A 1TBPA 3CWUA 1QN3A 3TDHA 1EUVA 3KTUA 1J3MA 5JN5A 3F0ZA 1JFIC 2Z0FA 1KYFA 2VJ0A 2NOFA 2JPIA 4EJZA 3OSMA 5JMVD 5HSHA 1PCZA 1PZDA 3RPJA 1QN7A 4PY5A 3N89A 1FN7A 4D7QA 2HKPA 5IYBP 1UT7A 1QN4A 2JOIA 1VTLE 1V5SA 1LWVA 2ZFDB 3HS9A 2MZ8A 3DPTA 2EHBD 4EAJA 3ENCA 3EIKA 3PDKA 2JHJA 2O3OA 1TBAB 2MJ7A 4EAIA 5BMNA 5IYCP 1Q9UA 1HU0A 1QNCA 2QR1A 1QNAA 2NOBA 3D4VA 1K35A 1P5DX 2F7LA 2Z8UA 3CWTA 4EJYA 2HL9A 4MRQA 2FKMX 3RSMA 3H1ZA 2NWVA 3ENOC 3KRMA 3OH6A 2D0AA 1VKLA 2D0CA 2LAEA 2OOXA 3I3WA 3NA5A 3CVSA 2QREA 3EAYA 1VTOA 1K2YX 2YA3A 2H4LX 4IL8A 1C47A 1YQLA 3TE5A 5AN4A 1XSZA 1TUOA 4Q11A 1E42A 2IV9A 1VOKA
chains in the Genus database with same CATH topology
1V5SA 4CFFA 2ZFDB 1UL7A 2OOYA 2EHBD 4EAJA 4EAIA 4EAGA 2QR1A 2V8QA 4EAKA 2V9JA 2V92A 3OSEA 2Y8QA 2QRCA 2QRDA 3TDHA 2Y8LA 2OOXA 4EALA 2QREA 2QLVA 2YA3A 3T4NA 3TE5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V5S A;  4CFF A;  2ZFD B;  1UL7 A;  2OOY A;  2EHB D;  4EAJ A;  4EAI A;  4EAG A;  2QR1 A;  2V8Q A;  4EAK A;  2V9J A;  2V92 A;  3OSE A;  2Y8Q A;  2QRC A;  2QRD A;  3TDH A;  2Y8L A;  2OOX A;  4EAL A;  2QRE A;  2QLV A;  2YA3 A;  3T4N A;  3TE5 A; 
#chains in the Genus database with same CATH topology
 1WJW A;  2NLV A;  4CFF A;  2HZM A;  1W80 A;  1YQK A;  3ASM A;  4WZS D;  2OOY A;  1N3C A;  2NOL A;  2PWW A;  1M3H A;  3PMG A;  2I5W A;  1UT4 A;  1DIZ A;  4I8O A;  4HJH A;  2V8Q A;  3CW7 A;  2V9J A;  3C04 A;  1N3A A;  3VN5 A;  4QG5 A;  2JHN A;  3OSE A;  3F10 A;  4ROC B;  1YQM A;  1QNB A;  1JDY A;  1KYU A;  1KYD A;  5BMP A;  1AIS A;  1TGH A;  3OCI A;  1QTS A;  2NOE A;  2QRD A;  3IH7 A;  2FUV A;  2XHI A;  2Y8L A;  1VOL B;  4DUL A;  1T6A A;  2G30 A;  3OGD A;  2FGT A;  2QLV A;  2HZS A;  4BJU A;  1RM1 A;  3T4N A;  3ULX A;  3OH9 A;  3BKQ X;  1KO9 A;  1R4X A;  2DKA A;  3D7Q A;  2HL8 A;  2D0B A;  1LWY A;  1N39 A;  1LXT A;  4WX8 A;  5EPC A;  1UL7 A;  2R5X A;  5KL0 A;  3CWA A;  1CDW A;  2NOI A;  3OC3 C;  2FKF A;  1LWW A;  1PCM X;  4B0A A;  3CWS A;  4EAK A;  3CVT A;  2NVM A;  4ROE B;  2H5A X;  1NGM A;  2Y8Q A;  3I0W A;  1YQR A;  1NVP A;  1KY7 A;  2QRC A;  1KFQ A;  4C7P A;  1YTB A;  3DPU A;  1M3Q A;  1KFI A;  1C4G A;  1EBM A;  5IYD P;  4EAL A;  1QN9 A;  1PVS A;  1WQA A;  1P5G X;  1D3U A;  3UW2 A;  4WXA A;  4D7R A;  2DKD A;  1KY6 A;  2YH5 A;  3OST A;  1QN6 A;  2IV8 A;  2NOH A;  3SNS A;  1MPG A;  1YTF A;  1M5Q 1;  3HS8 A;  1NH2 A;  5F9C A;  1B9K A;  1C9B B;  1PCJ X;  2NOZ A;  3I0X A;  1QTP A;  1QNE A;  4EAG A;  3OLP A;  4TPS A;  4ROD B;  1MP9 A;  2V92 A;  1QN8 A;  2DKC A;  1QN5 A;  1TBP A;  3CWU A;  1QN3 A;  3TDH A;  1EUV A;  3KTU A;  1J3M A;  5JN5 A;  3F0Z A;  1JFI C;  2Z0F A;  1KYF A;  2VJ0 A;  2NOF A;  2JPI A;  4EJZ A;  3OSM A;  5JMV D;  5HSH A;  1PCZ A;  1PZD A;  3RPJ A;  1QN7 A;  4PY5 A;  3N89 A;  1FN7 A;  4D7Q A;  2HKP A;  5IYB P;  1UT7 A;  1QN4 A;  2JOI A;  1VTL E;  1V5S A;  1LWV A;  2ZFD B;  3HS9 A;  2MZ8 A;  3DPT A;  2EHB D;  4EAJ A;  3ENC A;  3EIK A;  3PDK A;  2JHJ A;  2O3O A;  1TBA B;  2MJ7 A;  4EAI A;  5BMN A;  5IYC P;  1Q9U A;  1HU0 A;  1QNC A;  2QR1 A;  1QNA A;  2NOB A;  3D4V A;  1K35 A;  1P5D X;  2F7L A;  2Z8U A;  3CWT A;  4EJY A;  2HL9 A;  4MRQ A;  2FKM X;  3RSM A;  3H1Z A;  2NWV A;  3ENO C;  3KRM A;  3OH6 A;  2D0A A;  1VKL A;  2D0C A;  2LAE A;  2OOX A;  3I3W A;  3NA5 A;  3CVS A;  2QRE A;  3EAY A;  1VTO A;  1K2Y X;  2YA3 A;  2H4L X;  4IL8 A;  1C47 A;  1YQL A;  3TE5 A;  5AN4 A;  1XSZ A;  1TUO A;  4Q11 A;  1E42 A;  2IV9 A;  1VOK A; 
#chains in the Genus database with same CATH homology
 1V5S A;  4CFF A;  2ZFD B;  1UL7 A;  2OOY A;  2EHB D;  4EAJ A;  4EAI A;  4EAG A;  2QR1 A;  2V8Q A;  4EAK A;  2V9J A;  2V92 A;  3OSE A;  2Y8Q A;  2QRC A;  2QRD A;  3TDH A;  2Y8L A;  2OOX A;  4EAL A;  2QRE A;  2QLV A;  2YA3 A;  3T4N A;  3TE5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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