2QRE | Genus

Total Genus 29

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	126
structure length	109
Chain Sequence	KWHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFMLDVKSNGYKDIYSKSSFPFLDLCAMLVCKLFSA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__562397582353456__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__562397582353456__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/2QRE/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__562397582353456__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"562397582353456","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/2QRE/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__562397582353456__ ready

script 1 started

platformSpeed = 8

Viewer cachePut cache://localLOAD_/file/5cfd81808c360daa5533bb0d/pdb.gz

Viewer cachePut https://genus.fuw.edu.pl/file/5cfd81808c360daa5533bb0d/pdb.gz

FileManager.getAtomSetCollectionFromFile(/file/5cfd81808c360daa5533bb0d/pdb.gz)

loadScript /static/js/j2s/core/corezip.z.js

The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfd81808c360daa5533bb0d/pdb.gz): 997 ms

reading 109 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

109 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 17 ms

Adding embedded #jmolscript: select ({0:108});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Schizosaccharomyces pombe
publication title	Structural Insight into AMPK Regulation: ADP Comes into Play. pubmed doi rcsb
molecule keywords	SNF1-like protein kinase ssp2
total genus	29
structure length	109
sequence length	126
chains with identical sequence	C
ec nomenclature	ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date	2007-07-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16579	AdenylateSensor	Adenylate sensor of SNF1-like protein kinase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.80	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Kinase associated domain 1, KA1	2qreA00

3OSEA 2EHBD 2YA3A 4EAJA 4EAIA 2QRDA 2OOXA 2OOYA 2V8QA 3TDHA 4CFFA 3TE5A 2QR1A 4EAKA 2V9JA 2Y8QA 1UL7A 2QREA 3T4NA 2Y8LA 2QLVA 2ZFDB 4EAGA 1V5SA 2V92A 4EALA 2QRCA
chains in the Genus database with same CATH superfamily

1VTLE 1K2YX 3OSEA 1VOLB 4WX8A 2O3OA 4PY5A 1E42A 1VOKA 1KY6A 2YH5A 1PVSA 5AN4A 3VN5A 2VJ0A 4DULA 2DKCA 1TUOA 3OLPA 1EBMA 1YTFA 3ENCA 2HZSA 4Q11A 1B9KA 1KYDA 3OSTA 2HL8A 3PDKA 4CFFA 2D0AA 3I0XA 4EAKA 4TPSA 5JMVD 4B0AA 3F10A 2HL9A 1QN3A 2Y8LA 1QTSA 1QNBA 3HS8A 4EAGA 4C7PA 1JDYA 3ULXA 2DKAA 1LWYA 2V92A 3CWSA 1LWVA 1UT7A 1YQMA 4WXAA 1QN7A 3I3WA 3OSMA 1VTOA 1EUVA 2MZ8A 2YA3A 3H1ZA 1FN7A 2NOFA 3OCIA 5EPCA 1RM1A 1MPGA 5BMPA 4EAJA 1N39A 2FKMX 1T6AA 3RPJA 2NOZA 2QRDA 2OOXA 1PCZA 2FUVA 4D7QA 1N3CA 1KO9A 2F7LA 1KFQA 3PMGA 3EAYA 5KL0A 4BJUA 3OH6A 1M5Q1 3TE5A 2QR1A 3CWUA 2HKPA 1KYUA 1HU0A 5F9CA 3CVTA 1VKLA 1QNAA 2NOLA 3CWAA 1TBPA 1UL7A 3T4NA 2I5WA 4ROCB 2R5XA 2ZFDB 1P5DX 3C04A 1M3HA 1QTPA 1K35A 2G30A 3EIKA 4IL8A 2NVMA 2NWVA 1WQAA 1YTBA 1R4XA 2D0CA 4RODB 3ENOC 3SNSA 1QN9A 1DIZA 4HJHA 3OH9A 2XHIA 3RSMA 1C47A 3CVSA 3D4VA 3OGDA 2PWWA 1C4GA 4MRQA 4ROEB 1KYFA 1W80A 4EAIA 1Q9UA 2FGTA 2OOYA 3F0ZA 1YQLA 2V8QA 5JN5A 1N3AA 1UT4A 4I8OA 2H5AX 2NLVA 3BKQX 5IYCP 1D3UA 1QN8A 2HZMA 1M3QA 1YQKA 2FKFA 1QN4A 5IYBP 2Z8UA 2IV8A 3CW7A 1KY7A 1PCJX 2QREA 3DPUA 3OC3C 2QLVA 1PZDA 3CWTA 1V5SA 3TDHA 4D7RA 4EALA 1AISA 2QRCA 1TGHA 2LAEA 3NA5A 1CDWA 2EHBD 1TBAB 3KRMA 1QN5A 5IYDP 4WZSD 5HSHA 1PCMX 1JFIC 2NOBA 4QG5A 3DPTA 1QNCA 1XSZA 2IV9A 2H4LX 2JPIA 2NOEA 3IH7A 2JOIA 5BMNA 2MJ7A 1NH2A 1LXTA 1C9BB 1QNEA 2D0BA 2Z0FA 2NOIA 3N89A 1MP9A 1WJWA 3D7QA 2NOHA 3UW2A 3HS9A 2V9JA 2Y8QA 2JHJA 1NGMA 4EJYA 1KFIA 3ASMA 1QN6A 1LWWA 1J3MA 1YQRA 1NVPA 3KTUA 3I0WA 1P5GX 2DKDA 2JHNA 4EJZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3OSE A;  2EHB D;  2YA3 A;  4EAJ A;  4EAI A;  2QRD A;  2OOX A;  2OOY A;  2V8Q A;  3TDH A;  4CFF A;  3TE5 A;  2QR1 A;  4EAK A;  2V9J A;  2Y8Q A;  1UL7 A;  2QRE A;  3T4N A;  2Y8L A;  2QLV A;  2ZFD B;  4EAG A;  1V5S A;  2V92 A;  4EAL A;  2QRC A; 
#chains in the Genus database with same CATH topology
 1VTL E;  1K2Y X;  3OSE A;  1VOL B;  4WX8 A;  2O3O A;  4PY5 A;  1E42 A;  1VOK A;  1KY6 A;  2YH5 A;  1PVS A;  5AN4 A;  3VN5 A;  2VJ0 A;  4DUL A;  2DKC A;  1TUO A;  3OLP A;  1EBM A;  1YTF A;  3ENC A;  2HZS A;  4Q11 A;  1B9K A;  1KYD A;  3OST A;  2HL8 A;  3PDK A;  4CFF A;  2D0A A;  3I0X A;  4EAK A;  4TPS A;  5JMV D;  4B0A A;  3F10 A;  2HL9 A;  1QN3 A;  2Y8L A;  1QTS A;  1QNB A;  3HS8 A;  4EAG A;  4C7P A;  1JDY A;  3ULX A;  2DKA A;  1LWY A;  2V92 A;  3CWS A;  1LWV A;  1UT7 A;  1YQM A;  4WXA A;  1QN7 A;  3I3W A;  3OSM A;  1VTO A;  1EUV A;  2MZ8 A;  2YA3 A;  3H1Z A;  1FN7 A;  2NOF A;  3OCI A;  5EPC A;  1RM1 A;  1MPG A;  5BMP A;  4EAJ A;  1N39 A;  2FKM X;  1T6A A;  3RPJ A;  2NOZ A;  2QRD A;  2OOX A;  1PCZ A;  2FUV A;  4D7Q A;  1N3C A;  1KO9 A;  2F7L A;  1KFQ A;  3PMG A;  3EAY A;  5KL0 A;  4BJU A;  3OH6 A;  1M5Q 1;  3TE5 A;  2QR1 A;  3CWU A;  2HKP A;  1KYU A;  1HU0 A;  5F9C A;  3CVT A;  1VKL A;  1QNA A;  2NOL A;  3CWA A;  1TBP A;  1UL7 A;  3T4N A;  2I5W A;  4ROC B;  2R5X A;  2ZFD B;  1P5D X;  3C04 A;  1M3H A;  1QTP A;  1K35 A;  2G30 A;  3EIK A;  4IL8 A;  2NVM A;  2NWV A;  1WQA A;  1YTB A;  1R4X A;  2D0C A;  4ROD B;  3ENO C;  3SNS A;  1QN9 A;  1DIZ A;  4HJH A;  3OH9 A;  2XHI A;  3RSM A;  1C47 A;  3CVS A;  3D4V A;  3OGD A;  2PWW A;  1C4G A;  4MRQ A;  4ROE B;  1KYF A;  1W80 A;  4EAI A;  1Q9U A;  2FGT A;  2OOY A;  3F0Z A;  1YQL A;  2V8Q A;  5JN5 A;  1N3A A;  1UT4 A;  4I8O A;  2H5A X;  2NLV A;  3BKQ X;  5IYC P;  1D3U A;  1QN8 A;  2HZM A;  1M3Q A;  1YQK A;  2FKF A;  1QN4 A;  5IYB P;  2Z8U A;  2IV8 A;  3CW7 A;  1KY7 A;  1PCJ X;  2QRE A;  3DPU A;  3OC3 C;  2QLV A;  1PZD A;  3CWT A;  1V5S A;  3TDH A;  4D7R A;  4EAL A;  1AIS A;  2QRC A;  1TGH A;  2LAE A;  3NA5 A;  1CDW A;  2EHB D;  1TBA B;  3KRM A;  1QN5 A;  5IYD P;  4WZS D;  5HSH A;  1PCM X;  1JFI C;  2NOB A;  4QG5 A;  3DPT A;  1QNC A;  1XSZ A;  2IV9 A;  2H4L X;  2JPI A;  2NOE A;  3IH7 A;  2JOI A;  5BMN A;  2MJ7 A;  1NH2 A;  1LXT A;  1C9B B;  1QNE A;  2D0B A;  2Z0F A;  2NOI A;  3N89 A;  1MP9 A;  1WJW A;  3D7Q A;  2NOH A;  3UW2 A;  3HS9 A;  2V9J A;  2Y8Q A;  2JHJ A;  1NGM A;  4EJY A;  1KFI A;  3ASM A;  1QN6 A;  1LWW A;  1J3M A;  1YQR A;  1NVP A;  3KTU A;  3I0W A;  1P5G X;  2DKD A;  2JHN A;  4EJZ A; 
#chains in the Genus database with same CATH homology
 3OSE A;  2EHB D;  2YA3 A;  4EAJ A;  4EAI A;  2QRD A;  2OOX A;  2OOY A;  2V8Q A;  3TDH A;  4CFF A;  3TE5 A;  2QR1 A;  4EAK A;  2V9J A;  2Y8Q A;  1UL7 A;  2QRE A;  3T4N A;  2Y8L A;  2QLV A;  2ZFD B;  4EAG A;  1V5S A;  2V92 A;  4EAL A;  2QRC A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2QREA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations