2R5X | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	121
structure length	115
Chain Sequence	SLKFENTGLENQTVELSRLDDIMERLGFVRAAQWDYERVTYDRKYVVKEGTYYLRVQGYAIEGNVDSRYALIKLLTPIMGKHYYPHDEHFPSSLVSQCQNVLAQVKSELEKIKEE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Geobacillus kaustophilus
publication title	Crystal structure of uncharacterized protein YugN from Geobacillus kaustophilus HTA426. rcsb
molecule keywords	Uncharacterized conserved protein
total genus	30
structure length	115
sequence length	121
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-09-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08868	YugN	YugN-like family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.100	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	YugN-like	2r5xA00

2PWWA 2R5XA
chains in the Genus database with same CATH superfamily

2NOEA 3CWSA 2Z8UA 1W80A 1J3MA 1PCJX 3PDKA 3HS9A 3IH7A 1KFIA 2V92A 3D4VA 3I0XA 2D0AA 2G30A 3OSEA 3OH6A 2ZFDB 4D7RA 2FUVA 2NOHA 2R5XA 2YA3A 1YQRA 1QNAA 3HS8A 2QREA 1UL7A 3CWAA 2FKMX 1N3CA 1FN7A 1QN8A 1M3HA 3D7QA 3BKQX 5JMVD 1NGMA 3CWUA 1P5GX 1RM1A 5BMNA 1QNCA 2VJ0A 2NWVA 3NA5A 2XHIA 3H1ZA 1QNBA 1UT7A 1QN5A 1R4XA 1QN6A 3OLPA 1QTPA 2Z0FA 1HU0A 3UW2A 2JHNA 2DKAA 2HZSA 2H4LX 1VOLB 2PWWA 1MP9A 1C47A 2H5AX 2QR1A 2V9JA 2DKCA 1K35A 4B0AA 4ROEB 1YQMA 3CVTA 1VKLA 2JOIA 3EAYA 1AISA 1QN7A 4EJYA 2NOFA 4EAJA 1NH2A 1NVPA 3T4NA 1E42A 3CWTA 3F10A 3EIKA 5F9CA 4PY5A 1LWWA 1LXTA 2NOLA 2HL8A 2FKFA 4CFFA 3CW7A 1QN3A 1C4GA 3OSMA 1YQKA 1LWVA 1KYDA 1TUOA 1LWYA 3OCIA 2HKPA 3F0ZA 1EBMA 4Q11A 5HSHA 4DULA 3DPTA 4IL8A 1VTOA 5IYDP 1WQAA 3ASMA 1JFIC 3ENOC 1KY7A 2Y8QA 4TPSA 2QRCA 1PZDA 5AN4A 4C7PA 1CDWA 1TGHA 1YTFA 2IV9A 1Q9UA 1VOKA 1QNEA 3OGDA 1QN4A 2JHJA 2V8QA 1JDYA 3ENCA 4EJZA 1QN9A 4ROCB 2NOBA 1PCMX 2JPIA 2D0CA 5BMPA 1VTLE 4WX8A 3N89A 4QG5A 4MRQA 3DPUA 2YH5A 1N39A 4EAGA 3OC3C 3SNSA 4RODB 3OH9A 4HJHA 2FGTA 4EAKA 5KL0A 1V5SA 3C04A 2NLVA 2LAEA 1KY6A 2QRDA 2IV8A 3I3WA 1KO9A 3TE5A 3CVSA 1KFQA 1XSZA 1P5DX 2MZ8A 4WXAA 1PCZA 2DKDA 3VN5A 4D7QA 1PVSA 3KTUA 3ULXA 1TBAB 1EUVA 1T6AA 1KYFA 1YQLA 1UT4A 1C9BB 5EPCA 2OOXA 3RSMA 3TDHA 4EAIA 5JN5A 2NVMA 3KRMA 2HZMA 5IYCP 1N3AA 2NOIA 2O3OA 1TBPA 2MJ7A 2I5WA 1QTSA 4I8OA 1KYUA 1M5Q1 1K2YX 2EHBD 2QLVA 2Y8LA 3RPJA 4EALA 1MPGA 1D3UA 2F7LA 4WZSD 2OOYA 5IYBP 3OSTA 1DIZA 1YTBA 2HL9A 2NOZA 4BJUA 1B9KA 2D0BA 1M3QA 3I0WA 1WJWA 3PMGA
chains in the Genus database with same CATH topology

2PWWA 2R5XA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2PWW A;  2R5X A; 
#chains in the Genus database with same CATH topology
 2NOE A;  3CWS A;  2Z8U A;  1W80 A;  1J3M A;  1PCJ X;  3PDK A;  3HS9 A;  3IH7 A;  1KFI A;  2V92 A;  3D4V A;  3I0X A;  2D0A A;  2G30 A;  3OSE A;  3OH6 A;  2ZFD B;  4D7R A;  2FUV A;  2NOH A;  2R5X A;  2YA3 A;  1YQR A;  1QNA A;  3HS8 A;  2QRE A;  1UL7 A;  3CWA A;  2FKM X;  1N3C A;  1FN7 A;  1QN8 A;  1M3H A;  3D7Q A;  3BKQ X;  5JMV D;  1NGM A;  3CWU A;  1P5G X;  1RM1 A;  5BMN A;  1QNC A;  2VJ0 A;  2NWV A;  3NA5 A;  2XHI A;  3H1Z A;  1QNB A;  1UT7 A;  1QN5 A;  1R4X A;  1QN6 A;  3OLP A;  1QTP A;  2Z0F A;  1HU0 A;  3UW2 A;  2JHN A;  2DKA A;  2HZS A;  2H4L X;  1VOL B;  2PWW A;  1MP9 A;  1C47 A;  2H5A X;  2QR1 A;  2V9J A;  2DKC A;  1K35 A;  4B0A A;  4ROE B;  1YQM A;  3CVT A;  1VKL A;  2JOI A;  3EAY A;  1AIS A;  1QN7 A;  4EJY A;  2NOF A;  4EAJ A;  1NH2 A;  1NVP A;  3T4N A;  1E42 A;  3CWT A;  3F10 A;  3EIK A;  5F9C A;  4PY5 A;  1LWW A;  1LXT A;  2NOL A;  2HL8 A;  2FKF A;  4CFF A;  3CW7 A;  1QN3 A;  1C4G A;  3OSM A;  1YQK A;  1LWV A;  1KYD A;  1TUO A;  1LWY A;  3OCI A;  2HKP A;  3F0Z A;  1EBM A;  4Q11 A;  5HSH A;  4DUL A;  3DPT A;  4IL8 A;  1VTO A;  5IYD P;  1WQA A;  3ASM A;  1JFI C;  3ENO C;  1KY7 A;  2Y8Q A;  4TPS A;  2QRC A;  1PZD A;  5AN4 A;  4C7P A;  1CDW A;  1TGH A;  1YTF A;  2IV9 A;  1Q9U A;  1VOK A;  1QNE A;  3OGD A;  1QN4 A;  2JHJ A;  2V8Q A;  1JDY A;  3ENC A;  4EJZ A;  1QN9 A;  4ROC B;  2NOB A;  1PCM X;  2JPI A;  2D0C A;  5BMP A;  1VTL E;  4WX8 A;  3N89 A;  4QG5 A;  4MRQ A;  3DPU A;  2YH5 A;  1N39 A;  4EAG A;  3OC3 C;  3SNS A;  4ROD B;  3OH9 A;  4HJH A;  2FGT A;  4EAK A;  5KL0 A;  1V5S A;  3C04 A;  2NLV A;  2LAE A;  1KY6 A;  2QRD A;  2IV8 A;  3I3W A;  1KO9 A;  3TE5 A;  3CVS A;  1KFQ A;  1XSZ A;  1P5D X;  2MZ8 A;  4WXA A;  1PCZ A;  2DKD A;  3VN5 A;  4D7Q A;  1PVS A;  3KTU A;  3ULX A;  1TBA B;  1EUV A;  1T6A A;  1KYF A;  1YQL A;  1UT4 A;  1C9B B;  5EPC A;  2OOX A;  3RSM A;  3TDH A;  4EAI A;  5JN5 A;  2NVM A;  3KRM A;  2HZM A;  5IYC P;  1N3A A;  2NOI A;  2O3O A;  1TBP A;  2MJ7 A;  2I5W A;  1QTS A;  4I8O A;  1KYU A;  1M5Q 1;  1K2Y X;  2EHB D;  2QLV A;  2Y8L A;  3RPJ A;  4EAL A;  1MPG A;  1D3U A;  2F7L A;  4WZS D;  2OOY A;  5IYB P;  3OST A;  1DIZ A;  1YTB A;  2HL9 A;  2NOZ A;  4BJU A;  1B9K A;  2D0B A;  1M3Q A;  3I0W A;  1WJW A;  3PMG A; 
#chains in the Genus database with same CATH homology
 2PWW A;  2R5X A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2R5XA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations