3EIK | Genus

Total Genus 39

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	178
structure length	178
Chain Sequence	GIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__904698542377664__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__904698542377664__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/3EIK/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__904698542377664__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"904698542377664","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/3EIK/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__904698542377664__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Encephalitozoon cuniculi
publication title	structural studies of ecTBP rcsb
molecule keywords	TATA-box-binding protein
total genus	39
structure length	178
sequence length	178
chains with identical sequence	B
ec nomenclature
pdb deposition date	2008-09-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00352	TBP	Transcription factor TFIID (or TATA-binding protein, TBP)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	3eikA01
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	3eikA02

1E42A 1VTLE 3ASMA 1C9BB 1TBPA 3VN5A 5IYDP 3EIKA 1PZDA 1QN9A 1KYUA 3OC3C 1TBAB 3OCIA 4RODB 1QNEA 1VOLB 4PY5A 1AISA 1CDWA 3H1ZA 1QN5A 2Z8UA 1JFIC 1NVPA 1D3UA 1QNCA 3HS9A 1W80A 2D0BA 4B0AA 1QN8A 5IYBP 1QNAA 1QTPA 1QTSA 4ROEB 1NGMA 1QN3A 4WZSD 2IV9A 1KYFA 4ROCB 1QN7A 1KY6A 5IYCP 1PCZA 1YTFA 1KYDA 1B9KA 2G30A 1VOKA 1KY7A 3HS8A 2D0AA 1MP9A 1R4XA 1QN4A 2D0CA 2IV8A 1RM1A 1QNBA 1YTBA 1TGHA 2MJ7A 1NH2A 1QN6A 1VTOA 2VJ0A
chains in the Genus database with same CATH superfamily

1J3MA 3KRMA 1WQAA 3I0XA 2F7LA 4D7QA 4BJUA 1P5DX 2NOBA 4EJZA 4WXAA 1M5Q1 2PWWA 1KYUA 3OSTA 2NOHA 1AISA 4WX8A 2Z0FA 1NVPA 2R5XA 1QNCA 2LAEA 1QNAA 1JDYA 1QN3A 3RPJA 3C04A 2HL9A 2IV9A 2HKPA 3OSMA 3NA5A 2HZMA 2FKFA 2JPIA 1B9KA 1VOKA 3HS8A 4HJHA 1RM1A 1YTBA 1V5SA 1QN6A 2JHJA 2VJ0A 1E42A 5BMNA 2JHNA 4ROEB 1C9BB 1N3CA 3EIKA 3ENCA 3SNSA 1LXTA 1QN9A 3OCIA 1VOLB 4PY5A 2Y8QA 2DKAA 3KTUA 3CWSA 1QN5A 2NOEA 4EAJA 1UT7A 1FN7A 1D3UA 2V9JA 3DPTA 3HS9A 4I8OA 1W80A 2D0BA 2NOFA 4B0AA 2NOZA 5IYBP 1QTSA 4TPSA 1KFQA 1QN7A 3CW7A 3I0WA 1YTFA 1K2YX 2QR1A 3ENOC 3TE5A 2D0AA 1MP9A 1R4XA 2I5WA 3BKQX 2IV8A 1KFIA 1QNBA 1C4GA 2FGTA 2H5AX 4EJYA 2OOXA 4EAKA 3D7QA 4MRQA 5JN5A 1WJWA 2FUVA 2ZFDB 1M3HA 3N89A 2FKMX 1VTLE 3ASMA 3CVSA 4C7PA 1M3QA 3VN5A 1N3AA 5IYDP 1PZDA 4IL8A 3OH6A 3OC3C 1TBAB 3PMGA 4RODB 1QNEA 1CDWA 1UL7A 3TDHA 3CWTA 4EAIA 2V92A 1YQMA 1EBMA 1TUOA 5AN4A 1QTPA 2QLVA 1NGMA 3CVTA 1DIZA 2EHBD 2QRCA 1KY6A 5IYCP 1P5GX 1PCZA 2DKDA 3CWUA 3D4VA 1KYDA 1YQKA 2NOIA 3OGDA 2G30A 1KY7A 1N39A 1VKLA 4Q11A 1KO9A 4D7RA 2QREA 1PCMX 5HSHA 1PCJX 2DKCA 5BMPA 2JOIA 3RSMA 2HL8A 2O3OA 3OLPA 3UW2A 2MJ7A 4CFFA 5EPCA 1MPGA 1C47A 3DPUA 1UT4A 2YH5A 5JMVD 1PVSA 1TBPA 2H4LX 1XSZA 3IH7A 3T4NA 1T6AA 1LWYA 2XHIA 3F0ZA 2OOYA 3H1ZA 2NOLA 2Z8UA 1JFIC 3OSEA 4EALA 2NWVA 2NLVA 2NVMA 2V8QA 4EAGA 1HU0A 1QN8A 3F10A 1EUVA 1Q9UA 2QRDA 4WZSD 2YA3A 3PDKA 1KYFA 4ROCB 3CWAA 1LWWA 2HZSA 1YQLA 4DULA 3I3WA 5KL0A 3ULXA 1YQRA 1QN4A 5F9CA 4QG5A 2D0CA 3OH9A 1K35A 2Y8LA 1TGHA 2MZ8A 3EAYA 1NH2A 1VTOA 1LWVA
chains in the Genus database with same CATH topology

3KRMA 3I0XA 2NOBA 4EJZA 1KYUA 3OSTA 2NOHA 1AISA 1QNCA 1NVPA 2LAEA 1QNAA 1QN3A 3RPJA 2IV9A 3OSMA 2HZMA 1B9KA 1VOKA 3HS8A 1RM1A 1YTBA 1QN6A 4ROEB 1E42A 2VJ0A 1C9BB 1N3CA 3EIKA 3SNSA 1QN9A 4PY5A 1VOLB 3OCIA 3KTUA 1QN5A 2NOEA 1UT7A 1FN7A 1D3UA 3DPTA 2NOFA 3HS9A 4I8OA 1W80A 2D0BA 2NOZA 4B0AA 5IYBP 1QTSA 4TPSA 1QN7A 3I0WA 1YTFA 2D0AA 1MP9A 1R4XA 2I5WA 2IV8A 1QNBA 2FGTA 4EJYA 1M3HA 3N89A 1VTLE 3ASMA 1M3QA 3VN5A 1N3AA 5IYDP 1PZDA 3OC3C 1TBAB 4RODB 1QNEA 1CDWA 1EBMA 1YQMA 5AN4A 1QTPA 1NGMA 1KY6A 5IYCP 1PCZA 1YQKA 1KYDA 2NOIA 2G30A 1KY7A 1N39A 4Q11A 1KO9A 2JOIA 2O3OA 2MJ7A 3DPUA 1UT4A 2YH5A 1TBPA 3IH7A 1LWYA 2XHIA 3F0ZA 2NOLA 3H1ZA 2Z8UA 1JFIC 1HU0A 1QN8A 3F10A 4WZSD 1KYFA 4ROCB 1LWWA 2HZSA 1YQLA 4DULA 3ULXA 1YQRA 1QN4A 2D0CA 1TGHA 2MZ8A 1NH2A 1VTOA 1LWVA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1E42 A;  1VTL E;  3ASM A;  1C9B B;  1TBP A;  3VN5 A;  5IYD P;  3EIK A;  1PZD A;  1QN9 A;  1KYU A;  3OC3 C;  1TBA B;  3OCI A;  4ROD B;  1QNE A;  1VOL B;  4PY5 A;  1AIS A;  1CDW A;  3H1Z A;  1QN5 A;  2Z8U A;  1JFI C;  1NVP A;  1D3U A;  1QNC A;  3HS9 A;  1W80 A;  2D0B A;  4B0A A;  1QN8 A;  5IYB P;  1QNA A;  1QTP A;  1QTS A;  4ROE B;  1NGM A;  1QN3 A;  4WZS D;  2IV9 A;  1KYF A;  4ROC B;  1QN7 A;  1KY6 A;  5IYC P;  1PCZ A;  1YTF A;  1KYD A;  1B9K A;  2G30 A;  1VOK A;  1KY7 A;  3HS8 A;  2D0A A;  1MP9 A;  1R4X A;  1QN4 A;  2D0C A;  2IV8 A;  1RM1 A;  1QNB A;  1YTB A;  1TGH A;  2MJ7 A;  1NH2 A;  1QN6 A;  1VTO A;  2VJ0 A; 
#chains in the Genus database with same CATH topology
 1J3M A;  3KRM A;  1WQA A;  3I0X A;  2F7L A;  4D7Q A;  4BJU A;  1P5D X;  2NOB A;  4EJZ A;  4WXA A;  1M5Q 1;  2PWW A;  1KYU A;  3OST A;  2NOH A;  1AIS A;  4WX8 A;  2Z0F A;  1NVP A;  2R5X A;  1QNC A;  2LAE A;  1QNA A;  1JDY A;  1QN3 A;  3RPJ A;  3C04 A;  2HL9 A;  2IV9 A;  2HKP A;  3OSM A;  3NA5 A;  2HZM A;  2FKF A;  2JPI A;  1B9K A;  1VOK A;  3HS8 A;  4HJH A;  1RM1 A;  1YTB A;  1V5S A;  1QN6 A;  2JHJ A;  2VJ0 A;  1E42 A;  5BMN A;  2JHN A;  4ROE B;  1C9B B;  1N3C A;  3EIK A;  3ENC A;  3SNS A;  1LXT A;  1QN9 A;  3OCI A;  1VOL B;  4PY5 A;  2Y8Q A;  2DKA A;  3KTU A;  3CWS A;  1QN5 A;  2NOE A;  4EAJ A;  1UT7 A;  1FN7 A;  1D3U A;  2V9J A;  3DPT A;  3HS9 A;  4I8O A;  1W80 A;  2D0B A;  2NOF A;  4B0A A;  2NOZ A;  5IYB P;  1QTS A;  4TPS A;  1KFQ A;  1QN7 A;  3CW7 A;  3I0W A;  1YTF A;  1K2Y X;  2QR1 A;  3ENO C;  3TE5 A;  2D0A A;  1MP9 A;  1R4X A;  2I5W A;  3BKQ X;  2IV8 A;  1KFI A;  1QNB A;  1C4G A;  2FGT A;  2H5A X;  4EJY A;  2OOX A;  4EAK A;  3D7Q A;  4MRQ A;  5JN5 A;  1WJW A;  2FUV A;  2ZFD B;  1M3H A;  3N89 A;  2FKM X;  1VTL E;  3ASM A;  3CVS A;  4C7P A;  1M3Q A;  3VN5 A;  1N3A A;  5IYD P;  1PZD A;  4IL8 A;  3OH6 A;  3OC3 C;  1TBA B;  3PMG A;  4ROD B;  1QNE A;  1CDW A;  1UL7 A;  3TDH A;  3CWT A;  4EAI A;  2V92 A;  1YQM A;  1EBM A;  1TUO A;  5AN4 A;  1QTP A;  2QLV A;  1NGM A;  3CVT A;  1DIZ A;  2EHB D;  2QRC A;  1KY6 A;  5IYC P;  1P5G X;  1PCZ A;  2DKD A;  3CWU A;  3D4V A;  1KYD A;  1YQK A;  2NOI A;  3OGD A;  2G30 A;  1KY7 A;  1N39 A;  1VKL A;  4Q11 A;  1KO9 A;  4D7R A;  2QRE A;  1PCM X;  5HSH A;  1PCJ X;  2DKC A;  5BMP A;  2JOI A;  3RSM A;  2HL8 A;  2O3O A;  3OLP A;  3UW2 A;  2MJ7 A;  4CFF A;  5EPC A;  1MPG A;  1C47 A;  3DPU A;  1UT4 A;  2YH5 A;  5JMV D;  1PVS A;  1TBP A;  2H4L X;  1XSZ A;  3IH7 A;  3T4N A;  1T6A A;  1LWY A;  2XHI A;  3F0Z A;  2OOY A;  3H1Z A;  2NOL A;  2Z8U A;  1JFI C;  3OSE A;  4EAL A;  2NWV A;  2NLV A;  2NVM A;  2V8Q A;  4EAG A;  1HU0 A;  1QN8 A;  3F10 A;  1EUV A;  1Q9U A;  2QRD A;  4WZS D;  2YA3 A;  3PDK A;  1KYF A;  4ROC B;  3CWA A;  1LWW A;  2HZS A;  1YQL A;  4DUL A;  3I3W A;  5KL0 A;  3ULX A;  1YQR A;  1QN4 A;  5F9C A;  4QG5 A;  2D0C A;  3OH9 A;  1K35 A;  2Y8L A;  1TGH A;  2MZ8 A;  3EAY A;  1NH2 A;  1VTO A;  1LWV A; 
#chains in the Genus database with same CATH homology
 3KRM A;  3I0X A;  2NOB A;  4EJZ A;  1KYU A;  3OST A;  2NOH A;  1AIS A;  1QNC A;  1NVP A;  2LAE A;  1QNA A;  1QN3 A;  3RPJ A;  2IV9 A;  3OSM A;  2HZM A;  1B9K A;  1VOK A;  3HS8 A;  1RM1 A;  1YTB A;  1QN6 A;  4ROE B;  1E42 A;  2VJ0 A;  1C9B B;  1N3C A;  3EIK A;  3SNS A;  1QN9 A;  4PY5 A;  1VOL B;  3OCI A;  3KTU A;  1QN5 A;  2NOE A;  1UT7 A;  1FN7 A;  1D3U A;  3DPT A;  2NOF A;  3HS9 A;  4I8O A;  1W80 A;  2D0B A;  2NOZ A;  4B0A A;  5IYB P;  1QTS A;  4TPS A;  1QN7 A;  3I0W A;  1YTF A;  2D0A A;  1MP9 A;  1R4X A;  2I5W A;  2IV8 A;  1QNB A;  2FGT A;  4EJY A;  1M3H A;  3N89 A;  1VTL E;  3ASM A;  1M3Q A;  3VN5 A;  1N3A A;  5IYD P;  1PZD A;  3OC3 C;  1TBA B;  4ROD B;  1QNE A;  1CDW A;  1EBM A;  1YQM A;  5AN4 A;  1QTP A;  1NGM A;  1KY6 A;  5IYC P;  1PCZ A;  1YQK A;  1KYD A;  2NOI A;  2G30 A;  1KY7 A;  1N39 A;  4Q11 A;  1KO9 A;  2JOI A;  2O3O A;  2MJ7 A;  3DPU A;  1UT4 A;  2YH5 A;  1TBP A;  3IH7 A;  1LWY A;  2XHI A;  3F0Z A;  2NOL A;  3H1Z A;  2Z8U A;  1JFI C;  1HU0 A;  1QN8 A;  3F10 A;  4WZS D;  1KYF A;  4ROC B;  1LWW A;  2HZS A;  1YQL A;  4DUL A;  3ULX A;  1YQR A;  1QN4 A;  2D0C A;  1TGH A;  2MZ8 A;  1NH2 A;  1VTO A;  1LWV A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3EIKA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations