3OST | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	119
structure length	119
Chain Sequence	KPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLD

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Lipid binding protein
source organism	Saccharomyces cerevisiae
publication title	Kinase Associated-1 Domains Drive MARK/PAR1 Kinases to Membrane Targets by Binding Acidic Phospholipids. pubmed doi rcsb
molecule keywords	serine/threonine-protein kinase KCC4
total genus	31
structure length	119
sequence length	119
ec nomenclature	ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date	2010-09-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16797	Fungal_KA1	Fungal kinase associated-1 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.220	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	3ostA00

3OSTA 3OSMA
chains in the Genus database with same CATH superfamily

1PZDA 2QREA 1KY6A 2O3OA 1PVSA 1KY7A 2D0BA 2DKCA 3I3WA 5IYBP 3IH7A 1NGMA 1MP9A 1YTFA 1VKLA 1C47A 4BJUA 1VOKA 4EAJA 2NOIA 2NOBA 1WJWA 1B9KA 2Y8QA 1TUOA 3PMGA 2NOLA 5HSHA 3RSMA 2HL9A 3RPJA 3DPUA 5F9CA 4ROEB 4EAIA 1KFIA 1UT4A 4D7QA 3TDHA 4IL8A 3CVTA 3HS8A 4DULA 1FN7A 2NWVA 2MZ8A 1JDYA 3D7QA 2YH5A 1PCMX 1YTBA 2NOZA 5JMVD 1E42A 1TBPA 3CW7A 1QNBA 3HS9A 3CWUA 1M5Q1 1YQMA 1N3AA 1MPGA 2V92A 2HKPA 1VTLE 1YQLA 1JFIC 3ENOC 1KYFA 3OGDA 3CVSA 1V5SA 2YA3A 2IV9A 2FKMX 2V8QA 1LXTA 1PCJX 3OSTA 2Y8LA 1Q9UA 3OCIA 1VOLB 3DPTA 4I8OA 2G30A 4CFFA 5IYCP 2JPIA 4WZSD 1D3UA 1QN6A 2HZSA 2PWWA 1T6AA 1K35A 3F0ZA 1M3HA 2H4LX 2NLVA 1YQKA 1KYUA 2HL8A 2DKAA 1J3MA 2D0AA 1EBMA 2NOHA 4ROCB 1KO9A 4C7PA 3OSEA 3KTUA 2QLVA 1PCZA 3OLPA 2FGTA 1UL7A 2R5XA 2Z0FA 5AN4A 1WQAA 4QG5A 4EAGA 2JHNA 4HJHA 3N89A 4B0AA 4D7RA 4EJYA 3OSMA 2FKFA 1C9BB 3D4VA 2IV8A 3T4NA 1KYDA 2QRDA 4Q11A 3I0XA 5IYDP 1QNEA 1QN5A 1RM1A 1C4GA 1TGHA 2MJ7A 2VJ0A 3EIKA 1P5DX 1VTOA 4PY5A 1QNAA 3CWTA 3CWAA 2NOFA 1UT7A 3ASMA 2JOIA 5JN5A 3UW2A 2XHIA 4EJZA 3EAYA 5EPCA 3ULXA 2Z8UA 3VN5A 1LWWA 1N3CA 2QRCA 2JHJA 1N39A 5KL0A 4WX8A 4WXAA 2F7LA 3F10A 2NVMA 3OH6A 1NVPA 1QTSA 3BKQX 3KRMA 1QN8A 1YQRA 2DKDA 2EHBD 4RODB 4EAKA 5BMNA 2D0CA 2H5AX 1LWVA 1QN3A 1QN4A 1KFQA 1DIZA 2FUVA 2NOEA 1XSZA 2V9JA 1CDWA 2ZFDB 1HU0A 1K2YX 2I5WA 4MRQA 1R4XA 3I0WA 1NH2A 1QNCA 3C04A 4EALA 1EUVA 3PDKA 5BMPA 3TE5A 2OOYA 1TBAB 2LAEA 1P5GX 1QTPA 3SNSA 1M3QA 1LWYA 1QN7A 3H1ZA 3OH9A 2HZMA 1AISA 3NA5A 3CWSA 3OC3C 2OOXA 1QN9A 4TPSA 2QR1A 3ENCA 1W80A
chains in the Genus database with same CATH topology

1PZDA 1KY6A 2O3OA 1KY7A 2D0BA 5IYBP 3IH7A 1NGMA 1MP9A 1YTFA 1VOKA 2NOIA 2NOBA 1B9KA 2NOLA 3RPJA 3DPUA 4ROEB 1UT4A 3HS8A 4DULA 1FN7A 2MZ8A 2YH5A 1YTBA 2NOZA 1E42A 1TBPA 1QNBA 3HS9A 1YQMA 1N3AA 1VTLE 1YQLA 1JFIC 1KYFA 2IV9A 3OSTA 3OCIA 1VOLB 3DPTA 4I8OA 2G30A 5IYCP 4WZSD 1D3UA 1QN6A 2HZSA 3F0ZA 1M3HA 1YQKA 1KYUA 2D0AA 1EBMA 2NOHA 4ROCB 1KO9A 3KTUA 1PCZA 2FGTA 5AN4A 3N89A 4B0AA 4EJYA 3OSMA 1C9BB 2IV8A 3I0XA 1KYDA 4Q11A 5IYDP 1QNEA 1QN5A 1RM1A 1TGHA 2MJ7A 2VJ0A 3EIKA 1VTOA 4PY5A 1QNAA 2NOFA 1UT7A 3ASMA 2JOIA 2XHIA 4EJZA 3ULXA 2Z8UA 3VN5A 1LWWA 1N3CA 1N39A 3F10A 1NVPA 1QTSA 3KRMA 1QN8A 1YQRA 4RODB 2D0CA 1LWVA 1QN3A 1QN4A 2NOEA 1CDWA 1HU0A 2I5WA 1R4XA 3I0WA 1NH2A 1QNCA 1TBAB 2LAEA 1QTPA 3SNSA 1M3QA 1LWYA 1QN7A 3H1ZA 2HZMA 1AISA 3OC3C 1QN9A 4TPSA 1W80A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3OST A;  3OSM A; 
#chains in the Genus database with same CATH topology
 1PZD A;  2QRE A;  1KY6 A;  2O3O A;  1PVS A;  1KY7 A;  2D0B A;  2DKC A;  3I3W A;  5IYB P;  3IH7 A;  1NGM A;  1MP9 A;  1YTF A;  1VKL A;  1C47 A;  4BJU A;  1VOK A;  4EAJ A;  2NOI A;  2NOB A;  1WJW A;  1B9K A;  2Y8Q A;  1TUO A;  3PMG A;  2NOL A;  5HSH A;  3RSM A;  2HL9 A;  3RPJ A;  3DPU A;  5F9C A;  4ROE B;  4EAI A;  1KFI A;  1UT4 A;  4D7Q A;  3TDH A;  4IL8 A;  3CVT A;  3HS8 A;  4DUL A;  1FN7 A;  2NWV A;  2MZ8 A;  1JDY A;  3D7Q A;  2YH5 A;  1PCM X;  1YTB A;  2NOZ A;  5JMV D;  1E42 A;  1TBP A;  3CW7 A;  1QNB A;  3HS9 A;  3CWU A;  1M5Q 1;  1YQM A;  1N3A A;  1MPG A;  2V92 A;  2HKP A;  1VTL E;  1YQL A;  1JFI C;  3ENO C;  1KYF A;  3OGD A;  3CVS A;  1V5S A;  2YA3 A;  2IV9 A;  2FKM X;  2V8Q A;  1LXT A;  1PCJ X;  3OST A;  2Y8L A;  1Q9U A;  3OCI A;  1VOL B;  3DPT A;  4I8O A;  2G30 A;  4CFF A;  5IYC P;  2JPI A;  4WZS D;  1D3U A;  1QN6 A;  2HZS A;  2PWW A;  1T6A A;  1K35 A;  3F0Z A;  1M3H A;  2H4L X;  2NLV A;  1YQK A;  1KYU A;  2HL8 A;  2DKA A;  1J3M A;  2D0A A;  1EBM A;  2NOH A;  4ROC B;  1KO9 A;  4C7P A;  3OSE A;  3KTU A;  2QLV A;  1PCZ A;  3OLP A;  2FGT A;  1UL7 A;  2R5X A;  2Z0F A;  5AN4 A;  1WQA A;  4QG5 A;  4EAG A;  2JHN A;  4HJH A;  3N89 A;  4B0A A;  4D7R A;  4EJY A;  3OSM A;  2FKF A;  1C9B B;  3D4V A;  2IV8 A;  3T4N A;  1KYD A;  2QRD A;  4Q11 A;  3I0X A;  5IYD P;  1QNE A;  1QN5 A;  1RM1 A;  1C4G A;  1TGH A;  2MJ7 A;  2VJ0 A;  3EIK A;  1P5D X;  1VTO A;  4PY5 A;  1QNA A;  3CWT A;  3CWA A;  2NOF A;  1UT7 A;  3ASM A;  2JOI A;  5JN5 A;  3UW2 A;  2XHI A;  4EJZ A;  3EAY A;  5EPC A;  3ULX A;  2Z8U A;  3VN5 A;  1LWW A;  1N3C A;  2QRC A;  2JHJ A;  1N39 A;  5KL0 A;  4WX8 A;  4WXA A;  2F7L A;  3F10 A;  2NVM A;  3OH6 A;  1NVP A;  1QTS A;  3BKQ X;  3KRM A;  1QN8 A;  1YQR A;  2DKD A;  2EHB D;  4ROD B;  4EAK A;  5BMN A;  2D0C A;  2H5A X;  1LWV A;  1QN3 A;  1QN4 A;  1KFQ A;  1DIZ A;  2FUV A;  2NOE A;  1XSZ A;  2V9J A;  1CDW A;  2ZFD B;  1HU0 A;  1K2Y X;  2I5W A;  4MRQ A;  1R4X A;  3I0W A;  1NH2 A;  1QNC A;  3C04 A;  4EAL A;  1EUV A;  3PDK A;  5BMP A;  3TE5 A;  2OOY A;  1TBA B;  2LAE A;  1P5G X;  1QTP A;  3SNS A;  1M3Q A;  1LWY A;  1QN7 A;  3H1Z A;  3OH9 A;  2HZM A;  1AIS A;  3NA5 A;  3CWS A;  3OC3 C;  2OOX A;  1QN9 A;  4TPS A;  2QR1 A;  3ENC A;  1W80 A; 
#chains in the Genus database with same CATH homology
 1PZD A;  1KY6 A;  2O3O A;  1KY7 A;  2D0B A;  5IYB P;  3IH7 A;  1NGM A;  1MP9 A;  1YTF A;  1VOK A;  2NOI A;  2NOB A;  1B9K A;  2NOL A;  3RPJ A;  3DPU A;  4ROE B;  1UT4 A;  3HS8 A;  4DUL A;  1FN7 A;  2MZ8 A;  2YH5 A;  1YTB A;  2NOZ A;  1E42 A;  1TBP A;  1QNB A;  3HS9 A;  1YQM A;  1N3A A;  1VTL E;  1YQL A;  1JFI C;  1KYF A;  2IV9 A;  3OST A;  3OCI A;  1VOL B;  3DPT A;  4I8O A;  2G30 A;  5IYC P;  4WZS D;  1D3U A;  1QN6 A;  2HZS A;  3F0Z A;  1M3H A;  1YQK A;  1KYU A;  2D0A A;  1EBM A;  2NOH A;  4ROC B;  1KO9 A;  3KTU A;  1PCZ A;  2FGT A;  5AN4 A;  3N89 A;  4B0A A;  4EJY A;  3OSM A;  1C9B B;  2IV8 A;  3I0X A;  1KYD A;  4Q11 A;  5IYD P;  1QNE A;  1QN5 A;  1RM1 A;  1TGH A;  2MJ7 A;  2VJ0 A;  3EIK A;  1VTO A;  4PY5 A;  1QNA A;  2NOF A;  1UT7 A;  3ASM A;  2JOI A;  2XHI A;  4EJZ A;  3ULX A;  2Z8U A;  3VN5 A;  1LWW A;  1N3C A;  1N39 A;  3F10 A;  1NVP A;  1QTS A;  3KRM A;  1QN8 A;  1YQR A;  4ROD B;  2D0C A;  1LWV A;  1QN3 A;  1QN4 A;  2NOE A;  1CDW A;  1HU0 A;  2I5W A;  1R4X A;  3I0W A;  1NH2 A;  1QNC A;  1TBA B;  2LAE A;  1QTP A;  3SNS A;  1M3Q A;  1LWY A;  1QN7 A;  3H1Z A;  2HZM A;  1AIS A;  3OC3 C;  1QN9 A;  4TPS A;  1W80 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3OSTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations