3TE5A

Structure of the regulatory fragment of sacchromyces cerevisiae ampk in complex with nadh
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
167
structure length
138
Chain Sequence
DSTVSILPTSLPQIHRANMLAQGSPAASKISPLVTKKSKTRWHFGIRSRSYPLDVMGEIYIALKNLGAEWAKPSEEDLWTIKLRWKYIPDLMKMVIQLFQIETNNYLVDFKFDGWESFSAYPFLHLTTKLIMELAVNS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Saccharomyces cerevisiae
publication title ADP Regulates SNF1, the Saccharomyces cerevisiae Homolog of AMP-Activated Protein Kinase.
pubmed doi rcsb
molecule keywords Carbon catabolite-derepressing protein kinase
total genus 30
structure length 138
sequence length 167
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2011-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16579 AdenylateSensor Adenylate sensor of SNF1-like protein kinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.80 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Kinase associated domain 1, KA1 3te5A01
4EAIA 2QRCA 2V9JA 3OSEA 2QR1A 3TE5A 1V5SA 2ZFDB 4EALA 2OOYA 3TDHA 4EAGA 2Y8QA 2Y8LA 2V8QA 2QRDA 2V92A 1UL7A 2OOXA 2EHBD 2YA3A 3T4NA 2QLVA 2QREA 4CFFA 4EAJA 4EAKA
chains in the Genus database with same CATH superfamily
3OSEA 1N3AA 1EUVA 2JOIA 1V5SA 2DKAA 1C47A 1WJWA 4I8OA 3DPTA 1TBPA 5EPCA 1KFQA 2FKFA 2FUVA 1KYUA 2NWVA 1NGMA 1QNEA 4EAGA 1YQRA 1LXTA 1MPGA 4WZSD 1QN5A 1KO9A 1KY6A 4EJYA 2D0CA 3CWAA 3SNSA 4PY5A 3OCIA 2NOLA 4WXAA 1YQLA 1D3UA 1B9KA 2DKCA 3CVSA 2VJ0A 3H1ZA 4EAJA 4Q11A 5IYDP 1QTPA 1NH2A 2NOIA 4C7PA 2QRCA 2V9JA 3N89A 4B0AA 2QR1A 1AISA 3ENCA 1QNCA 1YTBA 5IYBP 1K35A 2F7LA 1TBAB 1YQMA 1RM1A 2DKDA 2G30A 2NOZA 1C4GA 1P5GX 4EALA 2NLVA 1M3QA 4BJUA 1PVSA 2JHNA 1N3CA 3EIKA 3IH7A 4EJZA 1R4XA 2FGTA 1KFIA 2V8QA 4MRQA 1JDYA 2HL9A 4D7QA 3D7QA 2QRDA 3OLPA 2Z8UA 3HS8A 3EAYA 1UL7A 3CWUA 2EHBD 1M3HA 1HU0A 3ENOC 2QREA 4IL8A 3I0XA 2HZMA 3CW7A 2YH5A 2IV8A 1QN8A 3CWSA 2NOFA 3CVTA 4HJHA 2D0AA 4DULA 1PZDA 1UT7A 3TE5A 3KTUA 1YTFA 5AN4A 1QN7A 1PCMX 1TGHA 2ZFDB 5JMVD 3OH9A 3I0WA 2NVMA 3RSMA 3ULXA 1EBMA 2NOEA 1VOKA 1J3MA 1C9BB 2JPIA 2OOYA 1E42A 2H4LX 2MZ8A 5JN5A 3HS9A 2XHIA 2Y8QA 3NA5A 1JFIC 4TPSA 1QNAA 1QN3A 4ROEB 1KYDA 2FKMX 3OC3C 2D0BA 2V92A 1CDWA 4QG5A 1KYFA 2OOXA 3PMGA 1XSZA 2YA3A 1FN7A 2JHJA 1TUOA 2HZSA 5BMNA 4RODB 1YQKA 4CFFA 3ASMA 2O3OA 2IV9A 3OSMA 2R5XA 3OGDA 4EAIA 5IYCP 1PCZA 3DPUA 1UT4A 3KRMA 1LWYA 3CWTA 1DIZA 1VTOA 3F10A 1Q9UA 3RPJA 1QN9A 2NOHA 4WX8A 1NVPA 2I5WA 2NOBA 1LWWA 3C04A 1KY7A 5HSHA 1VTLE 1MP9A 2LAEA 1VKLA 3TDHA 3PDKA 3F0ZA 4ROCB 3VN5A 2Y8LA 5F9CA 3OH6A 1QN6A 1M5Q1 3D4VA 2HL8A 3UW2A 1QN4A 1W80A 1WQAA 1QTSA 2MJ7A 4D7RA 3BKQX 5KL0A 2PWWA 1K2YX 2HKPA 1PCJX 1T6AA 2Z0FA 3T4NA 1LWVA 1QNBA 2QLVA 1N39A 2H5AX 3OSTA 1VOLB 5BMPA 1P5DX 4EAKA 3I3WA
chains in the Genus database with same CATH topology
4EAIA 2QRCA 2V9JA 3OSEA 2QR1A 3TE5A 1V5SA 2ZFDB 4EALA 2OOYA 3TDHA 4EAGA 2Y8QA 2Y8LA 2V8QA 2QRDA 2V92A 1UL7A 2OOXA 2EHBD 2YA3A 3T4NA 2QLVA 2QREA 4CFFA 4EAJA 4EAKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EAI A;  2QRC A;  2V9J A;  3OSE A;  2QR1 A;  3TE5 A;  1V5S A;  2ZFD B;  4EAL A;  2OOY A;  3TDH A;  4EAG A;  2Y8Q A;  2Y8L A;  2V8Q A;  2QRD A;  2V92 A;  1UL7 A;  2OOX A;  2EHB D;  2YA3 A;  3T4N A;  2QLV A;  2QRE A;  4CFF A;  4EAJ A;  4EAK A; 
#chains in the Genus database with same CATH topology
 3OSE A;  1N3A A;  1EUV A;  2JOI A;  1V5S A;  2DKA A;  1C47 A;  1WJW A;  4I8O A;  3DPT A;  1TBP A;  5EPC A;  1KFQ A;  2FKF A;  2FUV A;  1KYU A;  2NWV A;  1NGM A;  1QNE A;  4EAG A;  1YQR A;  1LXT A;  1MPG A;  4WZS D;  1QN5 A;  1KO9 A;  1KY6 A;  4EJY A;  2D0C A;  3CWA A;  3SNS A;  4PY5 A;  3OCI A;  2NOL A;  4WXA A;  1YQL A;  1D3U A;  1B9K A;  2DKC A;  3CVS A;  2VJ0 A;  3H1Z A;  4EAJ A;  4Q11 A;  5IYD P;  1QTP A;  1NH2 A;  2NOI A;  4C7P A;  2QRC A;  2V9J A;  3N89 A;  4B0A A;  2QR1 A;  1AIS A;  3ENC A;  1QNC A;  1YTB A;  5IYB P;  1K35 A;  2F7L A;  1TBA B;  1YQM A;  1RM1 A;  2DKD A;  2G30 A;  2NOZ A;  1C4G A;  1P5G X;  4EAL A;  2NLV A;  1M3Q A;  4BJU A;  1PVS A;  2JHN A;  1N3C A;  3EIK A;  3IH7 A;  4EJZ A;  1R4X A;  2FGT A;  1KFI A;  2V8Q A;  4MRQ A;  1JDY A;  2HL9 A;  4D7Q A;  3D7Q A;  2QRD A;  3OLP A;  2Z8U A;  3HS8 A;  3EAY A;  1UL7 A;  3CWU A;  2EHB D;  1M3H A;  1HU0 A;  3ENO C;  2QRE A;  4IL8 A;  3I0X A;  2HZM A;  3CW7 A;  2YH5 A;  2IV8 A;  1QN8 A;  3CWS A;  2NOF A;  3CVT A;  4HJH A;  2D0A A;  4DUL A;  1PZD A;  1UT7 A;  3TE5 A;  3KTU A;  1YTF A;  5AN4 A;  1QN7 A;  1PCM X;  1TGH A;  2ZFD B;  5JMV D;  3OH9 A;  3I0W A;  2NVM A;  3RSM A;  3ULX A;  1EBM A;  2NOE A;  1VOK A;  1J3M A;  1C9B B;  2JPI A;  2OOY A;  1E42 A;  2H4L X;  2MZ8 A;  5JN5 A;  3HS9 A;  2XHI A;  2Y8Q A;  3NA5 A;  1JFI C;  4TPS A;  1QNA A;  1QN3 A;  4ROE B;  1KYD A;  2FKM X;  3OC3 C;  2D0B A;  2V92 A;  1CDW A;  4QG5 A;  1KYF A;  2OOX A;  3PMG A;  1XSZ A;  2YA3 A;  1FN7 A;  2JHJ A;  1TUO A;  2HZS A;  5BMN A;  4ROD B;  1YQK A;  4CFF A;  3ASM A;  2O3O A;  2IV9 A;  3OSM A;  2R5X A;  3OGD A;  4EAI A;  5IYC P;  1PCZ A;  3DPU A;  1UT4 A;  3KRM A;  1LWY A;  3CWT A;  1DIZ A;  1VTO A;  3F10 A;  1Q9U A;  3RPJ A;  1QN9 A;  2NOH A;  4WX8 A;  1NVP A;  2I5W A;  2NOB A;  1LWW A;  3C04 A;  1KY7 A;  5HSH A;  1VTL E;  1MP9 A;  2LAE A;  1VKL A;  3TDH A;  3PDK A;  3F0Z A;  4ROC B;  3VN5 A;  2Y8L A;  5F9C A;  3OH6 A;  1QN6 A;  1M5Q 1;  3D4V A;  2HL8 A;  3UW2 A;  1QN4 A;  1W80 A;  1WQA A;  1QTS A;  2MJ7 A;  4D7R A;  3BKQ X;  5KL0 A;  2PWW A;  1K2Y X;  2HKP A;  1PCJ X;  1T6A A;  2Z0F A;  3T4N A;  1LWV A;  1QNB A;  2QLV A;  1N39 A;  2H5A X;  3OST A;  1VOL B;  5BMP A;  1P5D X;  4EAK A;  3I3W A; 
#chains in the Genus database with same CATH homology
 4EAI A;  2QRC A;  2V9J A;  3OSE A;  2QR1 A;  3TE5 A;  1V5S A;  2ZFD B;  4EAL A;  2OOY A;  3TDH A;  4EAG A;  2Y8Q A;  2Y8L A;  2V8Q A;  2QRD A;  2V92 A;  1UL7 A;  2OOX A;  2EHB D;  2YA3 A;  3T4N A;  2QLV A;  2QRE A;  4CFF A;  4EAJ A;  4EAK A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.