4WXAA

Crystal structure of binary complex gon7-pcc1
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
84
structure length
84
Chain Sequence
KSLDHTLELKIPFETERQATIATKVLSPDPILKPQDFQVDYSSEKNVMLVQFRSIDDRVLRVGVSSIIDSIKTIVEAMDVLSHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII'1 (50-53)S2 (43-50)AH1 (22-31)S1 (11-18)TI1 (39-42)AH2 (63-88)S3 (53-60)Updating...
connected with : NaN
molecule tags Transcription
source organism Saccharomyces cerevisiae
publication title Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.
pubmed doi rcsb
molecule keywords EKC/KEOPS complex subunit PCC1
total genus 23
structure length 84
sequence length 84
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09341 Pcc1 Transcription factor Pcc1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 4wxaA00
1WQAA 1K2YX 4WXAA 3I3WA 3ENOC 4WX8A 4HJHA 3RSMA 1C47A 5HSHA 1PCMX 5EPCA 4MRQA 1C4GA 5BMPA 2DKCA 2FKMX 4QG5A 1TUOA 2FUVA 2H4LX 2JPIA 3OLPA 2F7LA 1KFQA 3ENCA 5BMNA 5JN5A 1LXTA 2H5AX 3BKQX 3PMGA 5KL0A 3PDKA 4BJUA 2Z0FA 1WJWA 2FKFA 5F9CA 5JMVD 3UW2A 1VKLA 1KFIA 1PCJX 1P5DX 3C04A 1P5GX 1JDYA 2DKAA 1K35A 2DKDA 4IL8A 3NA5A
chains in the Genus database with same CATH superfamily
1VTLE 1K2YX 3OSEA 1VOLB 4WX8A 2O3OA 4PY5A 1E42A 1VOKA 1KY6A 2YH5A 1PVSA 5AN4A 3VN5A 2VJ0A 4DULA 2DKCA 1TUOA 3OLPA 1EBMA 1YTFA 3ENCA 2HZSA 4Q11A 1B9KA 1KYDA 3OSTA 2HL8A 3PDKA 4CFFA 2D0AA 3I0XA 4EAKA 4TPSA 5JMVD 4B0AA 3F10A 2HL9A 1QN3A 2Y8LA 1QTSA 1QNBA 3HS8A 4EAGA 4C7PA 1JDYA 3ULXA 2DKAA 1LWYA 2V92A 3CWSA 1LWVA 1UT7A 1YQMA 4WXAA 1QN7A 3I3WA 3OSMA 1VTOA 1EUVA 2MZ8A 2YA3A 3H1ZA 1FN7A 2NOFA 3OCIA 5EPCA 1RM1A 1MPGA 5BMPA 4EAJA 1N39A 2FKMX 1T6AA 3RPJA 2NOZA 2QRDA 2OOXA 1PCZA 2FUVA 4D7QA 1N3CA 1KO9A 2F7LA 1KFQA 3PMGA 3EAYA 5KL0A 4BJUA 3OH6A 1M5Q1 3TE5A 2QR1A 3CWUA 2HKPA 1KYUA 1HU0A 5F9CA 3CVTA 1VKLA 1QNAA 2NOLA 3CWAA 1TBPA 1UL7A 3T4NA 2I5WA 4ROCB 2R5XA 2ZFDB 1P5DX 3C04A 1M3HA 1QTPA 1K35A 2G30A 3EIKA 4IL8A 2NVMA 2NWVA 1WQAA 1YTBA 1R4XA 2D0CA 4RODB 3ENOC 3SNSA 1QN9A 1DIZA 4HJHA 3OH9A 2XHIA 3RSMA 1C47A 3CVSA 3D4VA 3OGDA 2PWWA 1C4GA 4MRQA 4ROEB 1KYFA 1W80A 4EAIA 1Q9UA 2FGTA 2OOYA 3F0ZA 1YQLA 2V8QA 5JN5A 1N3AA 1UT4A 4I8OA 2H5AX 2NLVA 3BKQX 5IYCP 1D3UA 1QN8A 2HZMA 1M3QA 1YQKA 2FKFA 1QN4A 5IYBP 2Z8UA 2IV8A 3CW7A 1KY7A 1PCJX 2QREA 3DPUA 3OC3C 2QLVA 1PZDA 3CWTA 1V5SA 3TDHA 4D7RA 4EALA 1AISA 2QRCA 1TGHA 2LAEA 3NA5A 1CDWA 2EHBD 1TBAB 3KRMA 1QN5A 5IYDP 4WZSD 5HSHA 1PCMX 1JFIC 2NOBA 4QG5A 3DPTA 1QNCA 1XSZA 2IV9A 2H4LX 2JPIA 2NOEA 3IH7A 2JOIA 5BMNA 2MJ7A 1NH2A 1LXTA 1C9BB 1QNEA 2D0BA 2Z0FA 2NOIA 3N89A 1MP9A 1WJWA 3D7QA 2NOHA 3UW2A 3HS9A 2V9JA 2Y8QA 2JHJA 1NGMA 4EJYA 1KFIA 3ASMA 1QN6A 1LWWA 1J3MA 1YQRA 1NVPA 3KTUA 3I0WA 1P5GX 2DKDA 2JHNA 4EJZA
chains in the Genus database with same CATH topology
1WQAA 1K2YX 4WXAA 3I3WA 3ENOC 4WX8A 4HJHA 3RSMA 1C47A 5HSHA 1PCMX 5EPCA 4MRQA 1C4GA 5BMPA 2DKCA 2FKMX 4QG5A 1TUOA 2FUVA 2H4LX 2JPIA 3OLPA 2F7LA 1KFQA 3ENCA 5BMNA 5JN5A 1LXTA 2H5AX 3BKQX 3PMGA 5KL0A 3PDKA 4BJUA 2Z0FA 1WJWA 2FKFA 5F9CA 5JMVD 3UW2A 1VKLA 1KFIA 1PCJX 1P5DX 3C04A 1P5GX 1JDYA 2DKAA 1K35A 2DKDA 4IL8A 3NA5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WQA A;  1K2Y X;  4WXA A;  3I3W A;  3ENO C;  4WX8 A;  4HJH A;  3RSM A;  1C47 A;  5HSH A;  1PCM X;  5EPC A;  4MRQ A;  1C4G A;  5BMP A;  2DKC A;  2FKM X;  4QG5 A;  1TUO A;  2FUV A;  2H4L X;  2JPI A;  3OLP A;  2F7L A;  1KFQ A;  3ENC A;  5BMN A;  5JN5 A;  1LXT A;  2H5A X;  3BKQ X;  3PMG A;  5KL0 A;  3PDK A;  4BJU A;  2Z0F A;  1WJW A;  2FKF A;  5F9C A;  5JMV D;  3UW2 A;  1VKL A;  1KFI A;  1PCJ X;  1P5D X;  3C04 A;  1P5G X;  1JDY A;  2DKA A;  1K35 A;  2DKD A;  4IL8 A;  3NA5 A; 
#chains in the Genus database with same CATH topology
 1VTL E;  1K2Y X;  3OSE A;  1VOL B;  4WX8 A;  2O3O A;  4PY5 A;  1E42 A;  1VOK A;  1KY6 A;  2YH5 A;  1PVS A;  5AN4 A;  3VN5 A;  2VJ0 A;  4DUL A;  2DKC A;  1TUO A;  3OLP A;  1EBM A;  1YTF A;  3ENC A;  2HZS A;  4Q11 A;  1B9K A;  1KYD A;  3OST A;  2HL8 A;  3PDK A;  4CFF A;  2D0A A;  3I0X A;  4EAK A;  4TPS A;  5JMV D;  4B0A A;  3F10 A;  2HL9 A;  1QN3 A;  2Y8L A;  1QTS A;  1QNB A;  3HS8 A;  4EAG A;  4C7P A;  1JDY A;  3ULX A;  2DKA A;  1LWY A;  2V92 A;  3CWS A;  1LWV A;  1UT7 A;  1YQM A;  4WXA A;  1QN7 A;  3I3W A;  3OSM A;  1VTO A;  1EUV A;  2MZ8 A;  2YA3 A;  3H1Z A;  1FN7 A;  2NOF A;  3OCI A;  5EPC A;  1RM1 A;  1MPG A;  5BMP A;  4EAJ A;  1N39 A;  2FKM X;  1T6A A;  3RPJ A;  2NOZ A;  2QRD A;  2OOX A;  1PCZ A;  2FUV A;  4D7Q A;  1N3C A;  1KO9 A;  2F7L A;  1KFQ A;  3PMG A;  3EAY A;  5KL0 A;  4BJU A;  3OH6 A;  1M5Q 1;  3TE5 A;  2QR1 A;  3CWU A;  2HKP A;  1KYU A;  1HU0 A;  5F9C A;  3CVT A;  1VKL A;  1QNA A;  2NOL A;  3CWA A;  1TBP A;  1UL7 A;  3T4N A;  2I5W A;  4ROC B;  2R5X A;  2ZFD B;  1P5D X;  3C04 A;  1M3H A;  1QTP A;  1K35 A;  2G30 A;  3EIK A;  4IL8 A;  2NVM A;  2NWV A;  1WQA A;  1YTB A;  1R4X A;  2D0C A;  4ROD B;  3ENO C;  3SNS A;  1QN9 A;  1DIZ A;  4HJH A;  3OH9 A;  2XHI A;  3RSM A;  1C47 A;  3CVS A;  3D4V A;  3OGD A;  2PWW A;  1C4G A;  4MRQ A;  4ROE B;  1KYF A;  1W80 A;  4EAI A;  1Q9U A;  2FGT A;  2OOY A;  3F0Z A;  1YQL A;  2V8Q A;  5JN5 A;  1N3A A;  1UT4 A;  4I8O A;  2H5A X;  2NLV A;  3BKQ X;  5IYC P;  1D3U A;  1QN8 A;  2HZM A;  1M3Q A;  1YQK A;  2FKF A;  1QN4 A;  5IYB P;  2Z8U A;  2IV8 A;  3CW7 A;  1KY7 A;  1PCJ X;  2QRE A;  3DPU A;  3OC3 C;  2QLV A;  1PZD A;  3CWT A;  1V5S A;  3TDH A;  4D7R A;  4EAL A;  1AIS A;  2QRC A;  1TGH A;  2LAE A;  3NA5 A;  1CDW A;  2EHB D;  1TBA B;  3KRM A;  1QN5 A;  5IYD P;  4WZS D;  5HSH A;  1PCM X;  1JFI C;  2NOB A;  4QG5 A;  3DPT A;  1QNC A;  1XSZ A;  2IV9 A;  2H4L X;  2JPI A;  2NOE A;  3IH7 A;  2JOI A;  5BMN A;  2MJ7 A;  1NH2 A;  1LXT A;  1C9B B;  1QNE A;  2D0B A;  2Z0F A;  2NOI A;  3N89 A;  1MP9 A;  1WJW A;  3D7Q A;  2NOH A;  3UW2 A;  3HS9 A;  2V9J A;  2Y8Q A;  2JHJ A;  1NGM A;  4EJY A;  1KFI A;  3ASM A;  1QN6 A;  1LWW A;  1J3M A;  1YQR A;  1NVP A;  3KTU A;  3I0W A;  1P5G X;  2DKD A;  2JHN A;  4EJZ A; 
#chains in the Genus database with same CATH homology
 1WQA A;  1K2Y X;  4WXA A;  3I3W A;  3ENO C;  4WX8 A;  4HJH A;  3RSM A;  1C47 A;  5HSH A;  1PCM X;  5EPC A;  4MRQ A;  1C4G A;  5BMP A;  2DKC A;  2FKM X;  4QG5 A;  1TUO A;  2FUV A;  2H4L X;  2JPI A;  3OLP A;  2F7L A;  1KFQ A;  3ENC A;  5BMN A;  5JN5 A;  1LXT A;  2H5A X;  3BKQ X;  3PMG A;  5KL0 A;  3PDK A;  4BJU A;  2Z0F A;  1WJW A;  2FKF A;  5F9C A;  5JMV D;  3UW2 A;  1VKL A;  1KFI A;  1PCJ X;  1P5D X;  3C04 A;  1P5G X;  1JDY A;  2DKA A;  1K35 A;  2DKD A;  4IL8 A;  3NA5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.