4WZS | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	178
structure length	178
Chain Sequence	SGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQHR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Encephalitozoon cuniculi (strain gb-m1)
publication title	Structural basis for recognition and remodeling of the TBP:DNA:NC2 complex by Mot1. pubmed doi rcsb
molecule keywords	ECU11_1470 protein
total genus	25
structure length	178
sequence length	178
ec nomenclature
pdb deposition date	2014-11-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00352	TBP	Transcription factor TFIID (or TATA-binding protein, TBP)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	4wzsD01
3.30.310.10	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	4wzsD02

1QNBA 1C9BB 3ASMA 5IYBP 2IV9A 2D0BA 1TBPA 1MP9A 2MJ7A 1W80A 2IV8A 1KYDA 4B0AA 1CDWA 1QN5A 1YTBA 1QTPA 4WZSD 4ROCB 1NH2A 3OCIA 1QN4A 1R4XA 1YTFA 1QN3A 1VOKA 1QNAA 4ROEB 1KYFA 1PCZA 1NGMA 2VJ0A 1VTLE 1QNEA 3HS8A 1QN6A 1VTOA 1D3UA 2D0CA 1QTSA 4RODB 1QN8A 4PY5A 1AISA 1VOLB 1B9KA 5IYCP 3VN5A 2Z8UA 1KY7A 1KY6A 1QNCA 5IYDP 1RM1A 3H1ZA 1TGHA 1JFIC 1QN9A 1E42A 1KYUA 2G30A 1TBAB 3HS9A 3OC3C 1NVPA 3EIKA 2D0AA 1PZDA 1QN7A
chains in the Genus database with same CATH superfamily

1QNBA 1M5Q1 2HL8A 3ASMA 4I8OA 5IYBP 3F10A 3OLPA 4EAJA 4HJHA 2NOLA 2R5XA 3IH7A 2IV8A 1YQKA 3OH6A 1YTBA 2JHJA 3OSTA 1QTPA 3CWAA 2MZ8A 1C47A 3DPUA 3OCIA 2XHIA 1TUOA 4WXAA 3ENCA 1NGMA 2DKDA 2VJ0A 3CWUA 1VTLE 1PVSA 4EJYA 3I3WA 3OSEA 2NOIA 2QLVA 1KFIA 2JOIA 2HKPA 3UW2A 1VTOA 1DIZA 1QN6A 1FN7A 1QTSA 1PCJX 3I0WA 3TDHA 2ZFDB 3I0XA 2V9JA 1VOLB 3PMGA 1P5GX 2Z8UA 3RPJA 1KY6A 1LWYA 1QNCA 2JHNA 3KRMA 4CFFA 3CWSA 1TGHA 1QN9A 1JDYA 1KYUA 1T6AA 1NVPA 1J3MA 2FKFA 2D0AA 3ULXA 1KY7A 2V8QA 3BKQX 5AN4A 1QN7A 4D7QA 2Y8LA 1M3QA 1LWWA 1C4GA 4D7RA 1KYDA 2V92A 4EJZA 2QRCA 2O3OA 1PCMX 2QREA 2YH5A 1VOKA 5HSHA 3ENOC 1EBMA 1UL7A 2OOYA 3HS8A 2YA3A 1D3UA 4Q11A 5F9CA 2NOBA 4EAGA 2FUVA 4RODB 1YQLA 1P5DX 1KFQA 5BMNA 5IYCP 2OOXA 1MPGA 2Z0FA 2NOHA 4TPSA 1RM1A 4QG5A 1JFIC 3PDKA 1E42A 2G30A 2DKCA 1TBAB 1V5SA 2Y8QA 3HS9A 3OC3C 3D4VA 1YQMA 3T4NA 1C9BB 1TBPA 3DPTA 2MJ7A 2I5WA 2LAEA 1NH2A 1HU0A 1K35A 1QN4A 4BJUA 1QN3A 3OH9A 4IL8A 1QNAA 1LWVA 3EAYA 2EHBD 2HL9A 3CVSA 2DKAA 1K2YX 2HZSA 1N3AA 1QNEA 5BMPA 3OGDA 3CVTA 4EAIA 1VKLA 2NWVA 1WQAA 3CW7A 1QN8A 3CWTA 1AISA 1Q9UA 1UT4A 5EPCA 3VN5A 1N39A 2NOFA 3H1ZA 4C7PA 3SNSA 1N3CA 3C04A 2NOEA 3OSMA 3EIKA 4EAKA 1LXTA 2FKMX 3N89A 5JMVD 2IV9A 2D0BA 2NVMA 2PWWA 1UT7A 1MP9A 2QRDA 3TE5A 3D7QA 3F0ZA 1W80A 1EUVA 1XSZA 4B0AA 1CDWA 1QN5A 2NOZA 4WZSD 4ROCB 1YTFA 1R4XA 1KO9A 4MRQA 4ROEB 1KYFA 1PCZA 2FGTA 1YQRA 2NLVA 5JN5A 3RSMA 2D0CA 4EALA 2F7LA 2HZMA 4WX8A 4PY5A 2H4LX 3KTUA 1M3HA 1B9KA 1WJWA 2QR1A 3NA5A 5KL0A 5IYDP 4DULA 2H5AX 1PZDA 2JPIA
chains in the Genus database with same CATH topology

1QNBA 3ASMA 4I8OA 5IYBP 3F10A 2NOLA 3IH7A 2IV8A 1YQKA 1YTBA 3OSTA 1QTPA 2MZ8A 3DPUA 3OCIA 2XHIA 1NGMA 2VJ0A 1VTLE 4EJYA 2NOIA 1QN6A 2JOIA 1VTOA 1FN7A 1QTSA 3I0WA 3I0XA 1VOLB 3RPJA 2Z8UA 1QNCA 1KY6A 1LWYA 3KRMA 1TGHA 1QN9A 1KYUA 1NVPA 3ULXA 2D0AA 1KY7A 5AN4A 1QN7A 1M3QA 1LWWA 1KYDA 4EJZA 2O3OA 2YH5A 1VOKA 1EBMA 3HS8A 1D3UA 4Q11A 2NOBA 4RODB 1YQLA 5IYCP 2NOHA 4TPSA 1RM1A 1JFIC 1E42A 2G30A 3OC3C 1TBAB 3HS9A 1YQMA 1C9BB 1TBPA 3DPTA 2MJ7A 2I5WA 2LAEA 1NH2A 1HU0A 1QN4A 1QN3A 1QNAA 1LWVA 1N3AA 1QNEA 2HZSA 1QN8A 1AISA 1UT4A 3VN5A 1N39A 2NOFA 3H1ZA 3SNSA 1N3CA 2NOEA 3OSMA 3EIKA 3N89A 2IV9A 2D0BA 1UT7A 1MP9A 2NOZA 3F0ZA 1W80A 4B0AA 1CDWA 1QN5A 4WZSD 4ROCB 1YTFA 1R4XA 1KO9A 4ROEB 1KYFA 1PCZA 2FGTA 1YQRA 2D0CA 2HZMA 4PY5A 3KTUA 1M3HA 1B9KA 5IYDP 4DULA 1PZDA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1QNB A;  1C9B B;  3ASM A;  5IYB P;  2IV9 A;  2D0B A;  1TBP A;  1MP9 A;  2MJ7 A;  1W80 A;  2IV8 A;  1KYD A;  4B0A A;  1CDW A;  1QN5 A;  1YTB A;  1QTP A;  4WZS D;  4ROC B;  1NH2 A;  3OCI A;  1QN4 A;  1R4X A;  1YTF A;  1QN3 A;  1VOK A;  1QNA A;  4ROE B;  1KYF A;  1PCZ A;  1NGM A;  2VJ0 A;  1VTL E;  1QNE A;  3HS8 A;  1QN6 A;  1VTO A;  1D3U A;  2D0C A;  1QTS A;  4ROD B;  1QN8 A;  4PY5 A;  1AIS A;  1VOL B;  1B9K A;  5IYC P;  3VN5 A;  2Z8U A;  1KY7 A;  1KY6 A;  1QNC A;  5IYD P;  1RM1 A;  3H1Z A;  1TGH A;  1JFI C;  1QN9 A;  1E42 A;  1KYU A;  2G30 A;  1TBA B;  3HS9 A;  3OC3 C;  1NVP A;  3EIK A;  2D0A A;  1PZD A;  1QN7 A; 
#chains in the Genus database with same CATH topology
 1QNB A;  1M5Q 1;  2HL8 A;  3ASM A;  4I8O A;  5IYB P;  3F10 A;  3OLP A;  4EAJ A;  4HJH A;  2NOL A;  2R5X A;  3IH7 A;  2IV8 A;  1YQK A;  3OH6 A;  1YTB A;  2JHJ A;  3OST A;  1QTP A;  3CWA A;  2MZ8 A;  1C47 A;  3DPU A;  3OCI A;  2XHI A;  1TUO A;  4WXA A;  3ENC A;  1NGM A;  2DKD A;  2VJ0 A;  3CWU A;  1VTL E;  1PVS A;  4EJY A;  3I3W A;  3OSE A;  2NOI A;  2QLV A;  1KFI A;  2JOI A;  2HKP A;  3UW2 A;  1VTO A;  1DIZ A;  1QN6 A;  1FN7 A;  1QTS A;  1PCJ X;  3I0W A;  3TDH A;  2ZFD B;  3I0X A;  2V9J A;  1VOL B;  3PMG A;  1P5G X;  2Z8U A;  3RPJ A;  1KY6 A;  1LWY A;  1QNC A;  2JHN A;  3KRM A;  4CFF A;  3CWS A;  1TGH A;  1QN9 A;  1JDY A;  1KYU A;  1T6A A;  1NVP A;  1J3M A;  2FKF A;  2D0A A;  3ULX A;  1KY7 A;  2V8Q A;  3BKQ X;  5AN4 A;  1QN7 A;  4D7Q A;  2Y8L A;  1M3Q A;  1LWW A;  1C4G A;  4D7R A;  1KYD A;  2V92 A;  4EJZ A;  2QRC A;  2O3O A;  1PCM X;  2QRE A;  2YH5 A;  1VOK A;  5HSH A;  3ENO C;  1EBM A;  1UL7 A;  2OOY A;  3HS8 A;  2YA3 A;  1D3U A;  4Q11 A;  5F9C A;  2NOB A;  4EAG A;  2FUV A;  4ROD B;  1YQL A;  1P5D X;  1KFQ A;  5BMN A;  5IYC P;  2OOX A;  1MPG A;  2Z0F A;  2NOH A;  4TPS A;  1RM1 A;  4QG5 A;  1JFI C;  3PDK A;  1E42 A;  2G30 A;  2DKC A;  1TBA B;  1V5S A;  2Y8Q A;  3HS9 A;  3OC3 C;  3D4V A;  1YQM A;  3T4N A;  1C9B B;  1TBP A;  3DPT A;  2MJ7 A;  2I5W A;  2LAE A;  1NH2 A;  1HU0 A;  1K35 A;  1QN4 A;  4BJU A;  1QN3 A;  3OH9 A;  4IL8 A;  1QNA A;  1LWV A;  3EAY A;  2EHB D;  2HL9 A;  3CVS A;  2DKA A;  1K2Y X;  2HZS A;  1N3A A;  1QNE A;  5BMP A;  3OGD A;  3CVT A;  4EAI A;  1VKL A;  2NWV A;  1WQA A;  3CW7 A;  1QN8 A;  3CWT A;  1AIS A;  1Q9U A;  1UT4 A;  5EPC A;  3VN5 A;  1N39 A;  2NOF A;  3H1Z A;  4C7P A;  3SNS A;  1N3C A;  3C04 A;  2NOE A;  3OSM A;  3EIK A;  4EAK A;  1LXT A;  2FKM X;  3N89 A;  5JMV D;  2IV9 A;  2D0B A;  2NVM A;  2PWW A;  1UT7 A;  1MP9 A;  2QRD A;  3TE5 A;  3D7Q A;  3F0Z A;  1W80 A;  1EUV A;  1XSZ A;  4B0A A;  1CDW A;  1QN5 A;  2NOZ A;  4WZS D;  4ROC B;  1YTF A;  1R4X A;  1KO9 A;  4MRQ A;  4ROE B;  1KYF A;  1PCZ A;  2FGT A;  1YQR A;  2NLV A;  5JN5 A;  3RSM A;  2D0C A;  4EAL A;  2F7L A;  2HZM A;  4WX8 A;  4PY5 A;  2H4L X;  3KTU A;  1M3H A;  1B9K A;  1WJW A;  2QR1 A;  3NA5 A;  5KL0 A;  5IYD P;  4DUL A;  2H5A X;  1PZD A;  2JPI A; 
#chains in the Genus database with same CATH homology
 1QNB A;  3ASM A;  4I8O A;  5IYB P;  3F10 A;  2NOL A;  3IH7 A;  2IV8 A;  1YQK A;  1YTB A;  3OST A;  1QTP A;  2MZ8 A;  3DPU A;  3OCI A;  2XHI A;  1NGM A;  2VJ0 A;  1VTL E;  4EJY A;  2NOI A;  1QN6 A;  2JOI A;  1VTO A;  1FN7 A;  1QTS A;  3I0W A;  3I0X A;  1VOL B;  3RPJ A;  2Z8U A;  1QNC A;  1KY6 A;  1LWY A;  3KRM A;  1TGH A;  1QN9 A;  1KYU A;  1NVP A;  3ULX A;  2D0A A;  1KY7 A;  5AN4 A;  1QN7 A;  1M3Q A;  1LWW A;  1KYD A;  4EJZ A;  2O3O A;  2YH5 A;  1VOK A;  1EBM A;  3HS8 A;  1D3U A;  4Q11 A;  2NOB A;  4ROD B;  1YQL A;  5IYC P;  2NOH A;  4TPS A;  1RM1 A;  1JFI C;  1E42 A;  2G30 A;  3OC3 C;  1TBA B;  3HS9 A;  1YQM A;  1C9B B;  1TBP A;  3DPT A;  2MJ7 A;  2I5W A;  2LAE A;  1NH2 A;  1HU0 A;  1QN4 A;  1QN3 A;  1QNA A;  1LWV A;  1N3A A;  1QNE A;  2HZS A;  1QN8 A;  1AIS A;  1UT4 A;  3VN5 A;  1N39 A;  2NOF A;  3H1Z A;  3SNS A;  1N3C A;  2NOE A;  3OSM A;  3EIK A;  3N89 A;  2IV9 A;  2D0B A;  1UT7 A;  1MP9 A;  2NOZ A;  3F0Z A;  1W80 A;  4B0A A;  1CDW A;  1QN5 A;  4WZS D;  4ROC B;  1YTF A;  1R4X A;  1KO9 A;  4ROE B;  1KYF A;  1PCZ A;  2FGT A;  1YQR A;  2D0C A;  2HZM A;  4PY5 A;  3KTU A;  1M3H A;  1B9K A;  5IYD P;  4DUL A;  1PZD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4WZSD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations