The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
24
|
sequence length |
78
|
structure length |
78
|
Chain Sequence |
RVQAKIEIEFPSEDVAKVVYEAVLYEHLSVPYRRSEIDFKLEGKKIILDIKATDSSALRGTVNSYLRWIKAAIDVIEV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and functional characterization of KEOPS dimerization by Pcc1 and its role in t6A biosynthesis.
pubmed doi rcsb |
| molecule keywords |
Probable bifunctional tRNA threonylcarbamoyladenosine biosyn
|
| molecule tags |
Transferase
|
| source organism |
Methanocaldococcus jannaschii (strain atcc 43067 / dsm 2661 / jal-1 / jcm 10045
|
| total genus |
24
|
| structure length |
78
|
| sequence length |
78
|
| chains with identical sequence |
E, F, G, H
|
| ec nomenclature | |
| pdb deposition date | 2016-04-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| D | PF09341 | Pcc1 | Transcription factor Pcc1 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | Alpha-D-phosphohexomutase, C-terminal domain |
#chains in the Genus database with same CATH superfamily 2F7L A; 3BKQ X; 3I3W A; 1LXT A; 1C4G A; 3ENO C; 3UW2 A; 2DKD A; 2DKA A; 5JMV D; 1P5G X; 1WQA A; 1VKL A; 1KFQ A; 5F9C A; 2FUV A; 2FKF A; 3PDK A; 5EPC A; 1K2Y X; 5KL0 A; 1P5D X; 1WJW A; 1K35 A; 1TUO A; 4IL8 A; 2FKM X; 4BJU A; 2Z0F A; 2JPI A; 3C04 A; 4QG5 A; 1JDY A; 4HJH A; 1PCJ X; 3PMG A; 4WX8 A; 5BMP A; 2H5A X; 2H4L X; 4MRQ A; 4WXA A; 5JN5 A; 5BMN A; 3ENC A; 1KFI A; 3NA5 A; 3RSM A; 3OLP A; 5HSH A; 1C47 A; 2DKC A; 1PCM X; #chains in the Genus database with same CATH topology 3BKQ X; 1E42 A; 1VOK A; 4EJZ A; 1LXT A; 2HZM A; 2HL8 A; 2QRE A; 2DKD A; 2DKA A; 2YH5 A; 2JHN A; 3I0W A; 3OC3 C; 5JMV D; 2MZ8 A; 5F9C A; 1VKL A; 1QN6 A; 1DIZ A; 4CFF A; 1M3Q A; 2FUV A; 1R4X A; 1CDW A; 3RPJ A; 3CWS A; 2Y8Q A; 2NWV A; 2D0C A; 3ULX A; 5KL0 A; 1QNC A; 1KY7 A; 1TBA B; 1NGM A; 1K35 A; 4IL8 A; 3HS9 A; 3CWA A; 1QN4 A; 1EUV A; 1M3H A; 1QN5 A; 3CW7 A; 5JN5 A; 1LWV A; 4ROC B; 2NOI A; 3SNS A; 1PVS A; 2QR1 A; 1MPG A; 3OLP A; 5HSH A; 1QN8 A; 2DKC A; 2JHJ A; 1VTL E; 2D0A A; 1QN3 A; 3F10 A; 5AN4 A; 3ENO C; 2PWW A; 2HL9 A; 3OCI A; 1KYF A; 2QRD A; 3T4N A; 2ZFD B; 5EPC A; 1NVP A; 1QN9 A; 3OSM A; 1K2Y X; 4WZS D; 3EAY A; 3KRM A; 3OST A; 4Q11 A; 3IH7 A; 2I5W A; 2V9J A; 1Q9U A; 2Z0F A; 2JPI A; 2VJ0 A; 1YTB A; 4QG5 A; 1JDY A; 1PCJ X; 1YTF A; 1W80 A; 1N3C A; 4ROE B; 4PY5 A; 2H5A X; 2QRC A; 2H4L X; 2QLV A; 1D3U A; 2MJ7 A; 4WXA A; 1JFI C; 1NH2 A; 1B9K A; 2HZS A; 3DPT A; 3EIK A; 3TE5 A; 1KFI A; 2JOI A; 2NOF A; 2NVM A; 3OSE A; 1C47 A; 1XSZ A; 3H1Z A; 1PCM X; 2IV9 A; 2F7L A; 1LWY A; 2G30 A; 3I3W A; 2R5X A; 5IYC P; 1N3A A; 1QNE A; 1C4G A; 3UW2 A; 2NOE A; 4B0A A; 3N89 A; 1QNA A; 2FGT A; 3PDK A; 3OH6 A; 5IYD P; 3CWT A; 4I8O A; 4EAL A; 1YQL A; 1T6A A; 4EAJ A; 2XHI A; 3C04 A; 1MP9 A; 1UT4 A; 4HJH A; 3PMG A; 1TBP A; 1C9B B; 1VOL B; 1TGH A; 1J3M A; 4MRQ A; 3CWU A; 1PCZ A; 1YQM A; 5BMN A; 3CVS A; 1QTS A; 1N39 A; 1QN7 A; 3I0X A; 4EAI A; 1FN7 A; 3D7Q A; 1PZD A; 2Y8L A; 2O3O A; 4EAG A; 2V92 A; 2D0B A; 2LAE A; 2Z8U A; 1KYD A; 2IV8 A; 4ROD B; 1QTP A; 1V5S A; 4D7R A; 2OOX A; 2EHB D; 3OGD A; 3CVT A; 2HKP A; 2NOB A; 1KO9 A; 1P5G X; 1WQA A; 1KFQ A; 1LWW A; 1AIS A; 4EJY A; 1VTO A; 3ASM A; 3D4V A; 2FKF A; 3F0Z A; 4TPS A; 3KTU A; 1UT7 A; 2V8Q A; 2OOY A; 2NOL A; 3DPU A; 1QNB A; 1P5D X; 1KY6 A; 4C7P A; 1WJW A; 2NOH A; 1TUO A; 3OH9 A; 2FKM X; 4BJU A; 1UL7 A; 4D7Q A; 1M5Q 1; 2NLV A; 1EBM A; 3VN5 A; 4WX8 A; 5BMP A; 1YQR A; 2YA3 A; 1YQK A; 3HS8 A; 1KYU A; 3ENC A; 4EAK A; 3TDH A; 3NA5 A; 3RSM A; 1HU0 A; 5IYB P; 2NOZ A; 1RM1 A; 4DUL A; #chains in the Genus database with same CATH homology 2F7L A; 3BKQ X; 3I3W A; 1LXT A; 1C4G A; 3ENO C; 3UW2 A; 2DKD A; 2DKA A; 5JMV D; 1P5G X; 1WQA A; 1VKL A; 1KFQ A; 5F9C A; 2FUV A; 2FKF A; 3PDK A; 5EPC A; 1K2Y X; 5KL0 A; 1P5D X; 1WJW A; 1K35 A; 1TUO A; 4IL8 A; 2FKM X; 4BJU A; 2Z0F A; 2JPI A; 3C04 A; 4QG5 A; 1JDY A; 4HJH A; 1PCJ X; 3PMG A; 4WX8 A; 5BMP A; 2H5A X; 2H4L X; 4MRQ A; 4WXA A; 5JN5 A; 5BMN A; 3ENC A; 1KFI A; 3NA5 A; 3RSM A; 3OLP A; 5HSH A; 1C47 A; 2DKC A; 1PCM X;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
