2HZM | Genus

Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	51
sequence length	209
structure length	205
Chain Sequence	GKSAVIFVERATPATLTELKDALSNSILSVRDPWSIDFRTYRCSIKNLSKLMYSITFHHHGRQTVLIKDNSAMVTTAAAADIPPALVFNGSSTGVPESIDTILSSKLSNIWMQRQLIKGDAGETLILDGLTVRLVNLFSSTGFKGLLIELQADEAGEFETKIAGIEGHLAEIRAKEYKTSSDSLGPDTSNEICDLAYQYVRALEL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Saccharomyces cerevisiae
publication title	Structure and TBP binding of the Mediator head subcomplex Med8-Med18-Med20. pubmed doi rcsb
molecule keywords	RNA polymerase II mediator complex subunit 20
total genus	51
structure length	205
sequence length	209
chains with identical sequence	C, E, G
ec nomenclature
pdb deposition date	2006-08-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08612	Med20	TATA-binding related factor (TRF) of subunit 20 of Mediator complex

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.140.20	Mainly Beta	Single Sheet	q64v53_bacfr protein fold	q64v53_bacfr protein fold	2hzmA02
3.30.310.180	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	TATA-Binding Protein	2hzmA01

2HZSA 2HZMA
chains in the Genus database with same CATH superfamily

1D3UA 1HU0A 1T6AA 3I3WA 1Q9UA 2G30A 3OH9A 1JDYA 4OQBC 1QTPA 2NVMA 2Y8LA 4CFFA 1B9KA 4IL8A 3UW2A 3RSMA 2HZMA 4ROEB 3I0WA 2FKMX 1YTFA 2Y8QA 1JFIC 2JHJA 3ULXA 5JMVD 4EAIA 1QN3A 4ROCB 1QNEA 1YQMA 1LWYA 5AN4A 1TUOA 1C47A 3OH6A 1KY6A 3D4VA 2D0BA 1YQRA 3OLPA 1V5SA 3ENOC 1UT7A 2V9JA 1NVPA 2RA8A 5EPCA 2VJ0A 1MP9A 2HL9A 1VOLB 1KO9A 4D7QA 2CR9A 2XHIA 1UT4A 2LAEA 4WX8A 1WJWA 2QREA 5BMPA 1R4XA 4OQAC 1QTSA 2D0AA 1M5Q1 2MJ7A 3OSEA 1PCZA 5KL0A 3CWUA 4EALA 5BMNA 1EUVA 1M3HA 2Z8UA 3CW7A 4WXAA 4TPSA 3D7QA 1VTLE 3KRMA 1QNAA 4BJUA 1NGMA 4OPXC 1WQAA 2F7LA 3CWAA 2HZSA 1LWWA 3HS8A 2QLVA 4EAGA 3HS9A 1M3QA 3ENCA 1DIZA 3OGDA 2EHBD 1VOKA 3SNSA 1QN5A 1K2YX 2QRDA 1K35A 3BKQX 3OCIA 3TE5A 2JPIA 5JN5A 3EIKA 4Q11A 1KFIA 4QG5A 1LXTA 1N3AA 2NWVA 2IV8A 1N39A 2EOCA 2R5XA 4C7PA 2I5WA 4B0AA 1QNCA 1QN8A 3VN5A 1YQKA 3C04A 3CWTA 1UL7A 1VKLA 2DKCA 3CVTA 3F0ZA 1VTOA 1TGHA 1EBMA 2JHNA 2JOIA 3EAYA 1C4GA 2NLVA 4DQYC 4D7RA 2NOLA 2H5AX 3NA5A 2NOHA 2HKPA 2QR1A 2DKDA 3DPUA 4RODB 2O3OA 3F10A 3OSTA 4EJZA 2YA3A 1QN9A 1P5GX 1P5DX 3PMGA 3N89A 2NOBA 2ZFDB 2HL8A 1PCMX 3DPTA 4I8OA 1KFQA 1W80A 1TBAB 3OC3C 4EAJA 1QN7A 4HJHA 1TBPA 1J3MA 1PCJX 2IV9A 3T4NA 2DKAA 4WZSD 5IYCP 3IH7A 2H4LX 2NOFA 2D0CA 5IYBP 2V92A 3I0XA 2OOXA 1PVSA 2OOYA 1LWVA 1FN7A 2V8QA 2NOZA 5HSHA 1RM1A 5IYDP 2MZ8A 1MPGA 3RPJA 2FGTA 1KY7A 4EAKA 3CWSA 1KYFA 1PZDA 2Z0FA 1KYUA 3CVSA 3TDHA 1QNBA 1YTBA 4PY5A 3ASMA 1YQLA 2QRCA 1QN4A 1C9BB 3H1ZA 1QN6A 4DULA 2NOEA 2PWWA 3OSMA 5F9CA 2YH5A 3PDKA 4MRQA 1KYDA 2FUVA 3KTUA 1N3CA 1E42A 1CDWA 4EJYA 1XSZA 2NOIA 1AISA 1NH2A 2FKFA
chains in the Genus database with same CATH topology

1D3UA 1HU0A 2G30A 1QTPA 1B9KA 2HZMA 4ROEB 3I0WA 1YTFA 1JFIC 3ULXA 1QN3A 4ROCB 1QNEA 1YQMA 1LWYA 5AN4A 1KY6A 2D0BA 1YQRA 1UT7A 1NVPA 2VJ0A 1MP9A 1VOLB 1KO9A 2XHIA 1UT4A 2LAEA 1R4XA 1QTSA 2D0AA 2MJ7A 1PCZA 1M3HA 2Z8UA 4TPSA 1VTLE 3KRMA 1QNAA 1NGMA 1LWWA 2HZSA 3HS8A 3HS9A 1M3QA 1VOKA 3SNSA 1QN5A 3OCIA 3EIKA 4Q11A 1N3AA 1N39A 2IV8A 2I5WA 4B0AA 1QNCA 1QN8A 3VN5A 1YQKA 3F0ZA 1VTOA 1TGHA 1EBMA 2JOIA 2NOLA 2NOHA 3DPUA 4RODB 2O3OA 3F10A 3OSTA 4EJZA 1QN9A 2NOBA 3N89A 3DPTA 4I8OA 1W80A 1TBAB 3OC3C 1QN7A 1TBPA 2IV9A 4WZSD 5IYCP 3IH7A 2NOFA 2D0CA 5IYBP 3I0XA 1LWVA 1FN7A 2NOZA 1RM1A 5IYDP 2MZ8A 3RPJA 2FGTA 1KY7A 1KYFA 1PZDA 1KYUA 1QNBA 1YTBA 4PY5A 3ASMA 1YQLA 2NOEA 1QN4A 1C9BB 3H1ZA 1QN6A 4DULA 3OSMA 2YH5A 3KTUA 4EJYA 1KYDA 1CDWA 1N3CA 1E42A 2NOIA 1AISA 1NH2A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2HZS A;  2HZM A; 
#chains in the Genus database with same CATH topology
 1D3U A;  1HU0 A;  1T6A A;  3I3W A;  1Q9U A;  2G30 A;  3OH9 A;  1JDY A;  4OQB C;  1QTP A;  2NVM A;  2Y8L A;  4CFF A;  1B9K A;  4IL8 A;  3UW2 A;  3RSM A;  2HZM A;  4ROE B;  3I0W A;  2FKM X;  1YTF A;  2Y8Q A;  1JFI C;  2JHJ A;  3ULX A;  5JMV D;  4EAI A;  1QN3 A;  4ROC B;  1QNE A;  1YQM A;  1LWY A;  5AN4 A;  1TUO A;  1C47 A;  3OH6 A;  1KY6 A;  3D4V A;  2D0B A;  1YQR A;  3OLP A;  1V5S A;  3ENO C;  1UT7 A;  2V9J A;  1NVP A;  2RA8 A;  5EPC A;  2VJ0 A;  1MP9 A;  2HL9 A;  1VOL B;  1KO9 A;  4D7Q A;  2CR9 A;  2XHI A;  1UT4 A;  2LAE A;  4WX8 A;  1WJW A;  2QRE A;  5BMP A;  1R4X A;  4OQA C;  1QTS A;  2D0A A;  1M5Q 1;  2MJ7 A;  3OSE A;  1PCZ A;  5KL0 A;  3CWU A;  4EAL A;  5BMN A;  1EUV A;  1M3H A;  2Z8U A;  3CW7 A;  4WXA A;  4TPS A;  3D7Q A;  1VTL E;  3KRM A;  1QNA A;  4BJU A;  1NGM A;  4OPX C;  1WQA A;  2F7L A;  3CWA A;  2HZS A;  1LWW A;  3HS8 A;  2QLV A;  4EAG A;  3HS9 A;  1M3Q A;  3ENC A;  1DIZ A;  3OGD A;  2EHB D;  1VOK A;  3SNS A;  1QN5 A;  1K2Y X;  2QRD A;  1K35 A;  3BKQ X;  3OCI A;  3TE5 A;  2JPI A;  5JN5 A;  3EIK A;  4Q11 A;  1KFI A;  4QG5 A;  1LXT A;  1N3A A;  2NWV A;  2IV8 A;  1N39 A;  2EOC A;  2R5X A;  4C7P A;  2I5W A;  4B0A A;  1QNC A;  1QN8 A;  3VN5 A;  1YQK A;  3C04 A;  3CWT A;  1UL7 A;  1VKL A;  2DKC A;  3CVT A;  3F0Z A;  1VTO A;  1TGH A;  1EBM A;  2JHN A;  2JOI A;  3EAY A;  1C4G A;  2NLV A;  4DQY C;  4D7R A;  2NOL A;  2H5A X;  3NA5 A;  2NOH A;  2HKP A;  2QR1 A;  2DKD A;  3DPU A;  4ROD B;  2O3O A;  3F10 A;  3OST A;  4EJZ A;  2YA3 A;  1QN9 A;  1P5G X;  1P5D X;  3PMG A;  3N89 A;  2NOB A;  2ZFD B;  2HL8 A;  1PCM X;  3DPT A;  4I8O A;  1KFQ A;  1W80 A;  1TBA B;  3OC3 C;  4EAJ A;  1QN7 A;  4HJH A;  1TBP A;  1J3M A;  1PCJ X;  2IV9 A;  3T4N A;  2DKA A;  4WZS D;  5IYC P;  3IH7 A;  2H4L X;  2NOF A;  2D0C A;  5IYB P;  2V92 A;  3I0X A;  2OOX A;  1PVS A;  2OOY A;  1LWV A;  1FN7 A;  2V8Q A;  2NOZ A;  5HSH A;  1RM1 A;  5IYD P;  2MZ8 A;  1MPG A;  3RPJ A;  2FGT A;  1KY7 A;  4EAK A;  3CWS A;  1KYF A;  1PZD A;  2Z0F A;  1KYU A;  3CVS A;  3TDH A;  1QNB A;  1YTB A;  4PY5 A;  3ASM A;  1YQL A;  2QRC A;  1QN4 A;  1C9B B;  3H1Z A;  1QN6 A;  4DUL A;  2NOE A;  2PWW A;  3OSM A;  5F9C A;  2YH5 A;  3PDK A;  4MRQ A;  1KYD A;  2FUV A;  3KTU A;  1N3C A;  1E42 A;  1CDW A;  4EJY A;  1XSZ A;  2NOI A;  1AIS A;  1NH2 A;  2FKF A; 
#chains in the Genus database with same CATH homology
 1D3U A;  1HU0 A;  2G30 A;  1QTP A;  1B9K A;  2HZM A;  4ROE B;  3I0W A;  1YTF A;  1JFI C;  3ULX A;  1QN3 A;  4ROC B;  1QNE A;  1YQM A;  1LWY A;  5AN4 A;  1KY6 A;  2D0B A;  1YQR A;  1UT7 A;  1NVP A;  2VJ0 A;  1MP9 A;  1VOL B;  1KO9 A;  2XHI A;  1UT4 A;  2LAE A;  1R4X A;  1QTS A;  2D0A A;  2MJ7 A;  1PCZ A;  1M3H A;  2Z8U A;  4TPS A;  1VTL E;  3KRM A;  1QNA A;  1NGM A;  1LWW A;  2HZS A;  3HS8 A;  3HS9 A;  1M3Q A;  1VOK A;  3SNS A;  1QN5 A;  3OCI A;  3EIK A;  4Q11 A;  1N3A A;  1N39 A;  2IV8 A;  2I5W A;  4B0A A;  1QNC A;  1QN8 A;  3VN5 A;  1YQK A;  3F0Z A;  1VTO A;  1TGH A;  1EBM A;  2JOI A;  2NOL A;  2NOH A;  3DPU A;  4ROD B;  2O3O A;  3F10 A;  3OST A;  4EJZ A;  1QN9 A;  2NOB A;  3N89 A;  3DPT A;  4I8O A;  1W80 A;  1TBA B;  3OC3 C;  1QN7 A;  1TBP A;  2IV9 A;  4WZS D;  5IYC P;  3IH7 A;  2NOF A;  2D0C A;  5IYB P;  3I0X A;  1LWV A;  1FN7 A;  2NOZ A;  1RM1 A;  5IYD P;  2MZ8 A;  3RPJ A;  2FGT A;  1KY7 A;  1KYF A;  1PZD A;  1KYU A;  1QNB A;  1YTB A;  4PY5 A;  3ASM A;  1YQL A;  2NOE A;  1QN4 A;  1C9B B;  3H1Z A;  1QN6 A;  4DUL A;  3OSM A;  2YH5 A;  3KTU A;  4EJY A;  1KYD A;  1CDW A;  1N3C A;  1E42 A;  2NOI A;  1AIS A;  1NH2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2HZMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations