1KFQA

Crystal structure of exocytosis-sensitive phosphoprotein, pp63/parafusin (phosphoglucomutse) from paramecium. open form
Total Genus 174

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
174
sequence length
571
structure length
571
Chain Sequence
QQVIPAPRVQVTQPYAGQKPGTSGLRKKVSEATQPNYLENFVQSIFNTLRKDELKPKNVLFVGGDGRYFNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPGGKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEGTRLEKSHFEVKVVDTVQDYTQLMQKLFDFDLLKGLFSNKDFSFRFDGMHGVAGPYAKHIFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILGRQFFVTPSDSLAVIAANANLIFKNGLLGAARSMPTSGALDKVAAKNGIKLFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFEQLKQGNKADIYDYVDPVDQSVSKNQGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQQIQHETATALANIIKLGLEISDIAQFTGRNEPTVIT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
source organism Paramecium tetraurelia
publication title Crystal structure analysis of the exocytosis-sensitive phosphoprotein, pp63/parafusin (phosphoglucomutase), from Paramecium reveals significant conformational variability.
pubmed doi rcsb
molecule keywords phosphoglucomutase 1
total genus 174
structure length 571
sequence length 571
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2001-11-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1kfqA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1kfqA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1kfqA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1kfqA01
5EPCA 1KFQA 3ENCA 3PMGA 3I3WA 4WXAA 5JN5A 1KFIA 1WQAA 1PCJX 2DKDA 3RSMA 3OLPA 5KL0A 2FKFA 2FKMX 2H5AX 5BMPA 1VKLA 2EIUA 1C4GA 5F9CA 4WX8A 3C04A 2H4LX 1K2YX 1JDYA 2F7LA 4BJUA 5HSHA 4HJHA 2DKAA 2EHPA 5BMNA 1P5GX 3NA5A 1P5DX 4IL8A 1WJWA 3BKQX 2JPIA 1C47A 2Z0FA 3PDKA 4QG5A 3ENOC 1PCMX 3UW2A 5JMVD 1LXTA 1K35A 2FUVA 2DKCA 4MRQA 1TUOA
chains in the Genus database with same CATH superfamily
4D7RA 2LAEA 2QLVA 3OCIA 4CFFA 4D7QA 1KYFA 3ENCA 3PMGA 5JN5A 1QN7A 3EIKA 1QNBA 1QNEA 2ZFDB 1C9BB 1KY7A 1YQRA 1QNAA 1UT7A 3EAYA 2YH5A 3F0ZA 3KTUA 2HKPA 2FKFA 1QN9A 2EHBD 4C7PA 1MP9A 4WX8A 1D3UA 2JOIA 3HS9A 3I0WA 2QRCA 2NOBA 2JHJA 4HJHA 1JFIC 1QN4A 1M3HA 4RODB 2NOHA 5IYDP 1QNCA 2QRDA 1P5DX 4IL8A 4ROCB 4DULA 2R5XA 2MJ7A 1C47A 2Z0FA 1N3AA 1QN6A 1J3MA 3OSTA 4B0AA 2NOIA 1K35A 1M5Q1 2FUVA 2MZ8A 2OOXA 1UL7A 2D0CA 1VTLE 3DPTA 1UT4A 3F10A 1QN8A 3OSMA 4WXAA 1KO9A 3I3WA 1KFIA 3OSEA 1PCJX 3CWUA 2HL8A 3CVTA 1M3QA 3RSMA 1EBMA 1VOKA 1YTBA 2Y8LA 1XSZA 3ASMA 1C4GA 5F9CA 3C04A 1RM1A 1QN5A 3CWTA 1AISA 1YQKA 5IYBP 2EHPA 2VJ0A 3N89A 3H1ZA 1MPGA 5IYCP 1LWWA 3HS8A 4QG5A 1PCMX 2NOEA 3CVSA 1N39A 2IV8A 4EAKA 1N3CA 1KYUA 1NVPA 1QTSA 2NVMA 1KY6A 1YQMA 1TBPA 1VTOA 2HZSA 1T6AA 1V5SA 2QREA 4TPSA 2OOYA 3SNSA 4EALA 1CDWA 1TGHA 2YA3A 2DKDA 2NLVA 2NOZA 1HU0A 2H5AX 5BMPA 1VKLA 2XHIA 3OGDA 1EUVA 1KYDA 2NOLA 1B9KA 2H4LX 1K2YX 3DPUA 4BJUA 2Z8UA 3VN5A 2DKAA 2V8QA 1QN3A 1P5GX 3NA5A 1PCZA 4Q11A 3T4NA 2O3OA 3CWAA 1WJWA 1YQLA 2JPIA 3CWSA 2V92A 1FN7A 3PDKA 2JHNA 3ENOC 3ULXA 3UW2A 5JMVD 3TDHA 1QTPA 4MRQA 2QR1A 5EPCA 4EAGA 2G30A 4EAIA 1NH2A 1VOLB 2PWWA 1KFQA 1PVSA 1LWYA 3CW7A 2D0AA 4ROEB 1LWVA 1PZDA 1WQAA 1Q9UA 2NWVA 3RPJA 2I5WA 4EJZA 4I8OA 1E42A 3OLPA 5KL0A 2FGTA 2FKMX 2IV9A 3I0XA 1DIZA 4PY5A 2EIUA 1NGMA 1W80A 3D7QA 2HZMA 1JDYA 2F7LA 5HSHA 2Y8QA 3KRMA 1YTFA 1R4XA 3OC3C 5BMNA 3D4VA 2NOFA 4EAJA 3OH6A 3BKQX 2D0BA 2HL9A 5AN4A 4EJYA 1TBAB 3TE5A 4WZSD 1LXTA 3OH9A 2DKCA 1TUOA 2V9JA 3IH7A
chains in the Genus database with same CATH topology
5EPCA 1KFQA 3ENCA 3PMGA 3I3WA 4WXAA 5JN5A 1KFIA 1WQAA 1PCJX 2DKDA 3RSMA 3OLPA 5KL0A 2FKFA 2FKMX 2H5AX 5BMPA 1VKLA 2EIUA 1C4GA 5F9CA 4WX8A 3C04A 2H4LX 1K2YX 1JDYA 2F7LA 4BJUA 5HSHA 4HJHA 2DKAA 2EHPA 5BMNA 1P5GX 3NA5A 1P5DX 4IL8A 1WJWA 3BKQX 2JPIA 1C47A 2Z0FA 3PDKA 4QG5A 3ENOC 1PCMX 3UW2A 5JMVD 1LXTA 1K35A 2FUVA 2DKCA 4MRQA 1TUOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EPC A;  1KFQ A;  3ENC A;  3PMG A;  3I3W A;  4WXA A;  5JN5 A;  1KFI A;  1WQA A;  1PCJ X;  2DKD A;  3RSM A;  3OLP A;  5KL0 A;  2FKF A;  2FKM X;  2H5A X;  5BMP A;  1VKL A;  2EIU A;  1C4G A;  5F9C A;  4WX8 A;  3C04 A;  2H4L X;  1K2Y X;  1JDY A;  2F7L A;  4BJU A;  5HSH A;  4HJH A;  2DKA A;  2EHP A;  5BMN A;  1P5G X;  3NA5 A;  1P5D X;  4IL8 A;  1WJW A;  3BKQ X;  2JPI A;  1C47 A;  2Z0F A;  3PDK A;  4QG5 A;  3ENO C;  1PCM X;  3UW2 A;  5JMV D;  1LXT A;  1K35 A;  2FUV A;  2DKC A;  4MRQ A;  1TUO A; 
#chains in the Genus database with same CATH topology
 4D7R A;  2LAE A;  2QLV A;  3OCI A;  4CFF A;  4D7Q A;  1KYF A;  3ENC A;  3PMG A;  5JN5 A;  1QN7 A;  3EIK A;  1QNB A;  1QNE A;  2ZFD B;  1C9B B;  1KY7 A;  1YQR A;  1QNA A;  1UT7 A;  3EAY A;  2YH5 A;  3F0Z A;  3KTU A;  2HKP A;  2FKF A;  1QN9 A;  2EHB D;  4C7P A;  1MP9 A;  4WX8 A;  1D3U A;  2JOI A;  3HS9 A;  3I0W A;  2QRC A;  2NOB A;  2JHJ A;  4HJH A;  1JFI C;  1QN4 A;  1M3H A;  4ROD B;  2NOH A;  5IYD P;  1QNC A;  2QRD A;  1P5D X;  4IL8 A;  4ROC B;  4DUL A;  2R5X A;  2MJ7 A;  1C47 A;  2Z0F A;  1N3A A;  1QN6 A;  1J3M A;  3OST A;  4B0A A;  2NOI A;  1K35 A;  1M5Q 1;  2FUV A;  2MZ8 A;  2OOX A;  1UL7 A;  2D0C A;  1VTL E;  3DPT A;  1UT4 A;  3F10 A;  1QN8 A;  3OSM A;  4WXA A;  1KO9 A;  3I3W A;  1KFI A;  3OSE A;  1PCJ X;  3CWU A;  2HL8 A;  3CVT A;  1M3Q A;  3RSM A;  1EBM A;  1VOK A;  1YTB A;  2Y8L A;  1XSZ A;  3ASM A;  1C4G A;  5F9C A;  3C04 A;  1RM1 A;  1QN5 A;  3CWT A;  1AIS A;  1YQK A;  5IYB P;  2EHP A;  2VJ0 A;  3N89 A;  3H1Z A;  1MPG A;  5IYC P;  1LWW A;  3HS8 A;  4QG5 A;  1PCM X;  2NOE A;  3CVS A;  1N39 A;  2IV8 A;  4EAK A;  1N3C A;  1KYU A;  1NVP A;  1QTS A;  2NVM A;  1KY6 A;  1YQM A;  1TBP A;  1VTO A;  2HZS A;  1T6A A;  1V5S A;  2QRE A;  4TPS A;  2OOY A;  3SNS A;  4EAL A;  1CDW A;  1TGH A;  2YA3 A;  2DKD A;  2NLV A;  2NOZ A;  1HU0 A;  2H5A X;  5BMP A;  1VKL A;  2XHI A;  3OGD A;  1EUV A;  1KYD A;  2NOL A;  1B9K A;  2H4L X;  1K2Y X;  3DPU A;  4BJU A;  2Z8U A;  3VN5 A;  2DKA A;  2V8Q A;  1QN3 A;  1P5G X;  3NA5 A;  1PCZ A;  4Q11 A;  3T4N A;  2O3O A;  3CWA A;  1WJW A;  1YQL A;  2JPI A;  3CWS A;  2V92 A;  1FN7 A;  3PDK A;  2JHN A;  3ENO C;  3ULX A;  3UW2 A;  5JMV D;  3TDH A;  1QTP A;  4MRQ A;  2QR1 A;  5EPC A;  4EAG A;  2G30 A;  4EAI A;  1NH2 A;  1VOL B;  2PWW A;  1KFQ A;  1PVS A;  1LWY A;  3CW7 A;  2D0A A;  4ROE B;  1LWV A;  1PZD A;  1WQA A;  1Q9U A;  2NWV A;  3RPJ A;  2I5W A;  4EJZ A;  4I8O A;  1E42 A;  3OLP A;  5KL0 A;  2FGT A;  2FKM X;  2IV9 A;  3I0X A;  1DIZ A;  4PY5 A;  2EIU A;  1NGM A;  1W80 A;  3D7Q A;  2HZM A;  1JDY A;  2F7L A;  5HSH A;  2Y8Q A;  3KRM A;  1YTF A;  1R4X A;  3OC3 C;  5BMN A;  3D4V A;  2NOF A;  4EAJ A;  3OH6 A;  3BKQ X;  2D0B A;  2HL9 A;  5AN4 A;  4EJY A;  1TBA B;  3TE5 A;  4WZS D;  1LXT A;  3OH9 A;  2DKC A;  1TUO A;  2V9J A;  3IH7 A; 
#chains in the Genus database with same CATH homology
 5EPC A;  1KFQ A;  3ENC A;  3PMG A;  3I3W A;  4WXA A;  5JN5 A;  1KFI A;  1WQA A;  1PCJ X;  2DKD A;  3RSM A;  3OLP A;  5KL0 A;  2FKF A;  2FKM X;  2H5A X;  5BMP A;  1VKL A;  2EIU A;  1C4G A;  5F9C A;  4WX8 A;  3C04 A;  2H4L X;  1K2Y X;  1JDY A;  2F7L A;  4BJU A;  5HSH A;  4HJH A;  2DKA A;  2EHP A;  5BMN A;  1P5G X;  3NA5 A;  1P5D X;  4IL8 A;  1WJW A;  3BKQ X;  2JPI A;  1C47 A;  2Z0F A;  3PDK A;  4QG5 A;  3ENO C;  1PCM X;  3UW2 A;  5JMV D;  1LXT A;  1K35 A;  2FUV A;  2DKC A;  4MRQ A;  1TUO A; 
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