1P5D | Genus

Total Genus 170

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	170
sequence length	455
structure length	454
Chain Sequence	LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 454 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Isomerase
source organism	Pseudomonas aeruginosa
publication title	Structural basis of diverse substrate recognition by the enzyme PMM/PGM from P. aeruginosa. pubmed doi rcsb
molecule keywords	Phosphomannomutase
total genus	170
structure length	454
sequence length	455
ec nomenclature	ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date	2003-04-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF00408	PGM_PMM_IV	Phosphoglucomutase/phosphomannomutase, C-terminal domain
X	PF02878	PGM_PMM_I	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X	PF02879	PGM_PMM_II	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X	PF02880	PGM_PMM_III	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	1p5dX04
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	1p5dX03
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	1p5dX01
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	1p5dX02

5F9CA 2H4LX 1P5DX 2FKFA 3ENCA 3PMGA 1KFIA 1K35A 5BMNA 3UW2A 1JDYA 3C04A 3ENOC 5BMPA 1WJWA 4IL8A 1KFQA 1C47A 4QG5A 2JPIA 4HJHA 2DKCA 5HSHA 5EPCA 4BJUA 3BKQX 5JMVD 2EHPA 3PDKA 2FUVA 3RSMA 3I3WA 1P5GX 2H5AX 1PCMX 1LXTA 3OLPA 1VKLA 4WXAA 1PCJX 1WQAA 2F7LA 1K2YX 1C4GA 4MRQA 1TUOA 5KL0A 2FKMX 2Z0FA 2EIUA 5JN5A 2DKDA 3NA5A 2DKAA 4WX8A
chains in the Genus database with same CATH superfamily

3EIKA 1QNEA 2D0AA 3OSMA 1NGMA 1QN5A 2FKFA 2JHNA 2LAEA 3ENCA 1YTFA 4ROEB 1R4XA 4RODB 2HKPA 2NLVA 1N3AA 1KFIA 1K35A 5IYBP 1JDYA 3C04A 1RM1A 1WJWA 1PCZA 2V8QA 1TBAB 2JHJA 3KRMA 3CW7A 5IYCP 2QLVA 1QNBA 3BKQX 4EAKA 1KYDA 1D3UA 2FUVA 2EHBD 1M3HA 2H5AX 2QRCA 3TE5A 1YQKA 4C7PA 2IV9A 3RPJA 1XSZA 3H1ZA 1C9BB 1EUVA 1KY7A 4MRQA 1QNCA 1TUOA 2YA3A 3CWAA 3OC3C 1JFIC 3OCIA 2H4LX 1M3QA 3I0WA 5AN4A 3I0XA 3ULXA 4Q11A 1C47A 2O3OA 1W80A 2ZFDB 1UT7A 3HS8A 3N89A 1LWVA 2IV8A 2VJ0A 5HSHA 1TBPA 2D0BA 5EPCA 2EHPA 4WXAA 3OSEA 1LXTA 3OLPA 1VKLA 3DPTA 3KTUA 1PCJX 5IYDP 2NVMA 2MZ8A 2F7LA 2NWVA 1C4GA 3D4VA 2FKMX 1VTLE 2Y8LA 2DKDA 2NOLA 1QN4A 3NA5A 3OSTA 1QN8A 2R5XA 1LWWA 1QTSA 4WX8A 4BJUA 1VOLB 2V92A 2YH5A 1E42A 1VOKA 3T4NA 2NOZA 4B0AA 3PMGA 3CVTA 2NOFA 1Q9UA 2JOIA 3ASMA 3UW2A 3ENOC 4ROCB 3F10A 2NOEA 5BMPA 3SNSA 4EAIA 1KFQA 2HL8A 3VN5A 4QG5A 2JPIA 3CVSA 1NVPA 3F0ZA 2V9JA 4HJHA 1CDWA 2QR1A 1MP9A 5JMVD 1N39A 3IH7A 3D7QA 1J3MA 1PCMX 1QN7A 2G30A 3EAYA 4WZSD 3OGDA 1T6AA 1QNAA 1WQAA 2HZSA 1PZDA 2QRDA 2QREA 2Z0FA 1DIZA 1NH2A 4TPSA 4CFFA 2OOYA 1KYUA 2PWWA 2XHIA 2HL9A 1QN9A 1N3CA 1QN6A 2DKAA 2FGTA 1PVSA 1YTBA 5F9CA 1P5DX 4DULA 1QTPA 1KYFA 4EAGA 1VTOA 4PY5A 5BMNA 1UT4A 4EAJA 1YQRA 1LWYA 2NOBA 1B9KA 2D0CA 3CWTA 4IL8A 1KO9A 1QN3A 3CWSA 2Z8UA 4D7RA 1YQMA 2DKCA 3PDKA 3RSMA 3I3WA 1MPGA 1P5GX 1FN7A 2NOHA 3DPUA 2I5WA 3TDHA 1HU0A 4EALA 1M5Q1 3OH6A 1K2YX 2Y8QA 1KY6A 4D7QA 2HZMA 4I8OA 3OH9A 1AISA 5KL0A 4EJYA 3HS9A 3CWUA 2NOIA 2EIUA 1UL7A 2MJ7A 1V5SA 5JN5A 1EBMA 1YQLA 4EJZA 2OOXA 1TGHA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5F9C A;  2H4L X;  1P5D X;  2FKF A;  3ENC A;  3PMG A;  1KFI A;  1K35 A;  5BMN A;  3UW2 A;  1JDY A;  3C04 A;  3ENO C;  5BMP A;  1WJW A;  4IL8 A;  1KFQ A;  1C47 A;  4QG5 A;  2JPI A;  4HJH A;  2DKC A;  5HSH A;  5EPC A;  4BJU A;  3BKQ X;  5JMV D;  2EHP A;  3PDK A;  2FUV A;  3RSM A;  3I3W A;  1P5G X;  2H5A X;  1PCM X;  1LXT A;  3OLP A;  1VKL A;  4WXA A;  1PCJ X;  1WQA A;  2F7L A;  1K2Y X;  1C4G A;  4MRQ A;  1TUO A;  5KL0 A;  2FKM X;  2Z0F A;  2EIU A;  5JN5 A;  2DKD A;  3NA5 A;  2DKA A;  4WX8 A; 
#chains in the Genus database with same CATH topology
 3EIK A;  1QNE A;  2D0A A;  3OSM A;  1NGM A;  1QN5 A;  2FKF A;  2JHN A;  2LAE A;  3ENC A;  1YTF A;  4ROE B;  1R4X A;  4ROD B;  2HKP A;  2NLV A;  1N3A A;  1KFI A;  1K35 A;  5IYB P;  1JDY A;  3C04 A;  1RM1 A;  1WJW A;  1PCZ A;  2V8Q A;  1TBA B;  2JHJ A;  3KRM A;  3CW7 A;  5IYC P;  2QLV A;  1QNB A;  3BKQ X;  4EAK A;  1KYD A;  1D3U A;  2FUV A;  2EHB D;  1M3H A;  2H5A X;  2QRC A;  3TE5 A;  1YQK A;  4C7P A;  2IV9 A;  3RPJ A;  1XSZ A;  3H1Z A;  1C9B B;  1EUV A;  1KY7 A;  4MRQ A;  1QNC A;  1TUO A;  2YA3 A;  3CWA A;  3OC3 C;  1JFI C;  3OCI A;  2H4L X;  1M3Q A;  3I0W A;  5AN4 A;  3I0X A;  3ULX A;  4Q11 A;  1C47 A;  2O3O A;  1W80 A;  2ZFD B;  1UT7 A;  3HS8 A;  3N89 A;  1LWV A;  2IV8 A;  2VJ0 A;  5HSH A;  1TBP A;  2D0B A;  5EPC A;  2EHP A;  4WXA A;  3OSE A;  1LXT A;  3OLP A;  1VKL A;  3DPT A;  3KTU A;  1PCJ X;  5IYD P;  2NVM A;  2MZ8 A;  2F7L A;  2NWV A;  1C4G A;  3D4V A;  2FKM X;  1VTL E;  2Y8L A;  2DKD A;  2NOL A;  1QN4 A;  3NA5 A;  3OST A;  1QN8 A;  2R5X A;  1LWW A;  1QTS A;  4WX8 A;  4BJU A;  1VOL B;  2V92 A;  2YH5 A;  1E42 A;  1VOK A;  3T4N A;  2NOZ A;  4B0A A;  3PMG A;  3CVT A;  2NOF A;  1Q9U A;  2JOI A;  3ASM A;  3UW2 A;  3ENO C;  4ROC B;  3F10 A;  2NOE A;  5BMP A;  3SNS A;  4EAI A;  1KFQ A;  2HL8 A;  3VN5 A;  4QG5 A;  2JPI A;  3CVS A;  1NVP A;  3F0Z A;  2V9J A;  4HJH A;  1CDW A;  2QR1 A;  1MP9 A;  5JMV D;  1N39 A;  3IH7 A;  3D7Q A;  1J3M A;  1PCM X;  1QN7 A;  2G30 A;  3EAY A;  4WZS D;  3OGD A;  1T6A A;  1QNA A;  1WQA A;  2HZS A;  1PZD A;  2QRD A;  2QRE A;  2Z0F A;  1DIZ A;  1NH2 A;  4TPS A;  4CFF A;  2OOY A;  1KYU A;  2PWW A;  2XHI A;  2HL9 A;  1QN9 A;  1N3C A;  1QN6 A;  2DKA A;  2FGT A;  1PVS A;  1YTB A;  5F9C A;  1P5D X;  4DUL A;  1QTP A;  1KYF A;  4EAG A;  1VTO A;  4PY5 A;  5BMN A;  1UT4 A;  4EAJ A;  1YQR A;  1LWY A;  2NOB A;  1B9K A;  2D0C A;  3CWT A;  4IL8 A;  1KO9 A;  1QN3 A;  3CWS A;  2Z8U A;  4D7R A;  1YQM A;  2DKC A;  3PDK A;  3RSM A;  3I3W A;  1MPG A;  1P5G X;  1FN7 A;  2NOH A;  3DPU A;  2I5W A;  3TDH A;  1HU0 A;  4EAL A;  1M5Q 1;  3OH6 A;  1K2Y X;  2Y8Q A;  1KY6 A;  4D7Q A;  2HZM A;  4I8O A;  3OH9 A;  1AIS A;  5KL0 A;  4EJY A;  3HS9 A;  3CWU A;  2NOI A;  2EIU A;  1UL7 A;  2MJ7 A;  1V5S A;  5JN5 A;  1EBM A;  1YQL A;  4EJZ A;  2OOX A;  1TGH A; 
#chains in the Genus database with same CATH homology
 5F9C A;  2H4L X;  1P5D X;  2FKF A;  3ENC A;  3PMG A;  1KFI A;  1K35 A;  5BMN A;  3UW2 A;  1JDY A;  3C04 A;  3ENO C;  5BMP A;  1WJW A;  4IL8 A;  1KFQ A;  1C47 A;  4QG5 A;  2JPI A;  4HJH A;  2DKC A;  5HSH A;  5EPC A;  4BJU A;  3BKQ X;  5JMV D;  2EHP A;  3PDK A;  2FUV A;  3RSM A;  3I3W A;  1P5G X;  2H5A X;  1PCM X;  1LXT A;  3OLP A;  1VKL A;  4WXA A;  1PCJ X;  1WQA A;  2F7L A;  1K2Y X;  1C4G A;  4MRQ A;  1TUO A;  5KL0 A;  2FKM X;  2Z0F A;  2EIU A;  5JN5 A;  2DKD A;  3NA5 A;  2DKA A;  4WX8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1P5DX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations