1PCJX

Enzyme-ligand complex of p. aeruginosa pmm/pgm
Total Genus 172
50100150200250300350400450050100150
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
458
structure length
457
Chain Sequence
APTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
source organism Pseudomonas aeruginosa
publication title Structural basis of diverse substrate recognition by the enzyme PMM/PGM from P. aeruginosa.
pubmed doi rcsb
molecule keywords Phosphomannomutase
total genus 172
structure length 457
sequence length 458
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2003-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
X PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1pcjX04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1pcjX03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1pcjX01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1pcjX02
1KFIA 5HSHA 1C4GA 2FUVA 3NA5A 3PMGA 1KFQA 1C47A 1JDYA 2DKAA 3UW2A 4MRQA 3ENOC 4WXAA 3C04A 3I3WA 2DKCA 4WX8A 4BJUA 1PCJX 2Z0FA 2F7LA 5JMVD 3OLPA 4QG5A 3PDKA 1K2YX 1WQAA 2DKDA 5EPCA 1P5GX 5BMNA 1LXTA 2EIUA 2EHPA 2FKMX 2H5AX 2H4LX 1P5DX 2FKFA 4HJHA 1PCMX 1WJWA 1TUOA 5BMPA 3RSMA 1K35A 1VKLA 3BKQX 5KL0A 5F9CA 2JPIA 4IL8A 3ENCA 5JN5A
chains in the Genus database with same CATH superfamily
1KFIA 1QNCA 1MP9A 1QTSA 1C4GA 1YTFA 3OSTA 2I5WA 2YH5A 3PMGA 2HL8A 1Q9UA 2DKAA 2OOXA 3SNSA 1C9BB 2MJ7A 4WXAA 1E42A 3C04A 3I3WA 4BJUA 2NVMA 4Q11A 1HU0A 1WQAA 3ASMA 2QRDA 1B9KA 1UT7A 2NWVA 2NOBA 1N39A 5BMNA 1LXTA 2FKMX 2D0BA 1QN8A 3OCIA 1QNAA 4HJHA 2IV9A 1N3AA 2NOEA 2Z8UA 4D7QA 4ROEB 2HZSA 2D0CA 4WZSD 2G30A 3TDHA 1QN7A 4TPSA 2FGTA 3BKQX 3CVSA 2JPIA 4B0AA 4PY5A 3ENCA 1NH2A 3CWTA 2ZFDB 2XHIA 1PVSA 1QN4A 3HS8A 2FUVA 4CFFA 4D7RA 2OOYA 2JHJA 1YTBA 1UT4A 1C47A 1KYFA 1T6AA 1JDYA 3UW2A 1J3MA 1DIZA 1YQRA 2LAEA 3H1ZA 3DPUA 4EAGA 3I0WA 3OC3C 4EJZA 1PCJX 2YA3A 1EUVA 5JMVD 3OLPA 1N3CA 4QG5A 2NOZA 1LWWA 3OGDA 5EPCA 3CWUA 1RM1A 1KY7A 1XSZA 2NOHA 2EIUA 2QLVA 1NGMA 3D7QA 4ROCB 4RODB 1MPGA 3KRMA 2HZMA 1VTLE 1K35A 1LWVA 3OSEA 5IYBP 3IH7A 4IL8A 2D0AA 3OH6A 1QNEA 2EHBD 3N89A 2V9JA 5AN4A 3CWAA 3ULXA 1CDWA 1KFQA 2QREA 2HL9A 1KO9A 3EAYA 3ENOC 1QN6A 2NOIA 1QN9A 1QN3A 2Z0FA 1TBAB 2F7LA 2NOFA 3OSMA 2Y8LA 2DKDA 3HS9A 3PDKA 4EALA 5IYCP 3CW7A 3D4VA 1QN5A 2NOLA 2JOIA 1QNBA 1KYUA 2Y8QA 3RPJA 2MZ8A 2PWWA 3F10A 2EHPA 1KY6A 1M5Q1 3VN5A 2H5AX 2V8QA 1P5DX 2FKFA 4I8OA 1M3HA 1JFIC 2R5XA 1KYDA 1PCMX 1WJWA 2JHNA 2VJ0A 5BMPA 3RSMA 3CWSA 1AISA 3F0ZA 4EAIA 5KL0A 2IV8A 1M3QA 3OH9A 1VOLB 1VOKA 1LWYA 2QR1A 5JN5A 1YQKA 5HSHA 2V92A 2O3OA 3NA5A 3EIKA 3I0XA 1UL7A 3T4NA 4MRQA 4EAKA 2HKPA 4C7PA 1V5SA 2DKCA 4WX8A 1TGHA 1D3UA 2NLVA 2QRCA 3CVTA 1K2YX 1TBPA 1YQMA 1R4XA 4EJYA 1P5GX 1VTOA 1W80A 1PCZA 4DULA 1EBMA 1FN7A 3DPTA 2H4LX 1NVPA 5IYDP 1PZDA 4EAJA 1TUOA 1VKLA 3TE5A 5F9CA 1QTPA 1YQLA 3KTUA
chains in the Genus database with same CATH topology
1KFIA 5HSHA 1C4GA 2FUVA 3NA5A 3PMGA 1KFQA 1C47A 1JDYA 2DKAA 3UW2A 4MRQA 3ENOC 4WXAA 3C04A 3I3WA 2DKCA 4WX8A 4BJUA 1PCJX 2Z0FA 2F7LA 5JMVD 3OLPA 4QG5A 3PDKA 1K2YX 1WQAA 2DKDA 5EPCA 1P5GX 5BMNA 1LXTA 2EIUA 2EHPA 2FKMX 2H5AX 2H4LX 1P5DX 2FKFA 4HJHA 1PCMX 1WJWA 1TUOA 5BMPA 3RSMA 1K35A 1VKLA 3BKQX 5KL0A 5F9CA 2JPIA 4IL8A 3ENCA 5JN5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KFI A;  5HSH A;  1C4G A;  2FUV A;  3NA5 A;  3PMG A;  1KFQ A;  1C47 A;  1JDY A;  2DKA A;  3UW2 A;  4MRQ A;  3ENO C;  4WXA A;  3C04 A;  3I3W A;  2DKC A;  4WX8 A;  4BJU A;  1PCJ X;  2Z0F A;  2F7L A;  5JMV D;  3OLP A;  4QG5 A;  3PDK A;  1K2Y X;  1WQA A;  2DKD A;  5EPC A;  1P5G X;  5BMN A;  1LXT A;  2EIU A;  2EHP A;  2FKM X;  2H5A X;  2H4L X;  1P5D X;  2FKF A;  4HJH A;  1PCM X;  1WJW A;  1TUO A;  5BMP A;  3RSM A;  1K35 A;  1VKL A;  3BKQ X;  5KL0 A;  5F9C A;  2JPI A;  4IL8 A;  3ENC A;  5JN5 A; 
#chains in the Genus database with same CATH topology
 1KFI A;  1QNC A;  1MP9 A;  1QTS A;  1C4G A;  1YTF A;  3OST A;  2I5W A;  2YH5 A;  3PMG A;  2HL8 A;  1Q9U A;  2DKA A;  2OOX A;  3SNS A;  1C9B B;  2MJ7 A;  4WXA A;  1E42 A;  3C04 A;  3I3W A;  4BJU A;  2NVM A;  4Q11 A;  1HU0 A;  1WQA A;  3ASM A;  2QRD A;  1B9K A;  1UT7 A;  2NWV A;  2NOB A;  1N39 A;  5BMN A;  1LXT A;  2FKM X;  2D0B A;  1QN8 A;  3OCI A;  1QNA A;  4HJH A;  2IV9 A;  1N3A A;  2NOE A;  2Z8U A;  4D7Q A;  4ROE B;  2HZS A;  2D0C A;  4WZS D;  2G30 A;  3TDH A;  1QN7 A;  4TPS A;  2FGT A;  3BKQ X;  3CVS A;  2JPI A;  4B0A A;  4PY5 A;  3ENC A;  1NH2 A;  3CWT A;  2ZFD B;  2XHI A;  1PVS A;  1QN4 A;  3HS8 A;  2FUV A;  4CFF A;  4D7R A;  2OOY A;  2JHJ A;  1YTB A;  1UT4 A;  1C47 A;  1KYF A;  1T6A A;  1JDY A;  3UW2 A;  1J3M A;  1DIZ A;  1YQR A;  2LAE A;  3H1Z A;  3DPU A;  4EAG A;  3I0W A;  3OC3 C;  4EJZ A;  1PCJ X;  2YA3 A;  1EUV A;  5JMV D;  3OLP A;  1N3C A;  4QG5 A;  2NOZ A;  1LWW A;  3OGD A;  5EPC A;  3CWU A;  1RM1 A;  1KY7 A;  1XSZ A;  2NOH A;  2EIU A;  2QLV A;  1NGM A;  3D7Q A;  4ROC B;  4ROD B;  1MPG A;  3KRM A;  2HZM A;  1VTL E;  1K35 A;  1LWV A;  3OSE A;  5IYB P;  3IH7 A;  4IL8 A;  2D0A A;  3OH6 A;  1QNE A;  2EHB D;  3N89 A;  2V9J A;  5AN4 A;  3CWA A;  3ULX A;  1CDW A;  1KFQ A;  2QRE A;  2HL9 A;  1KO9 A;  3EAY A;  3ENO C;  1QN6 A;  2NOI A;  1QN9 A;  1QN3 A;  2Z0F A;  1TBA B;  2F7L A;  2NOF A;  3OSM A;  2Y8L A;  2DKD A;  3HS9 A;  3PDK A;  4EAL A;  5IYC P;  3CW7 A;  3D4V A;  1QN5 A;  2NOL A;  2JOI A;  1QNB A;  1KYU A;  2Y8Q A;  3RPJ A;  2MZ8 A;  2PWW A;  3F10 A;  2EHP A;  1KY6 A;  1M5Q 1;  3VN5 A;  2H5A X;  2V8Q A;  1P5D X;  2FKF A;  4I8O A;  1M3H A;  1JFI C;  2R5X A;  1KYD A;  1PCM X;  1WJW A;  2JHN A;  2VJ0 A;  5BMP A;  3RSM A;  3CWS A;  1AIS A;  3F0Z A;  4EAI A;  5KL0 A;  2IV8 A;  1M3Q A;  3OH9 A;  1VOL B;  1VOK A;  1LWY A;  2QR1 A;  5JN5 A;  1YQK A;  5HSH A;  2V92 A;  2O3O A;  3NA5 A;  3EIK A;  3I0X A;  1UL7 A;  3T4N A;  4MRQ A;  4EAK A;  2HKP A;  4C7P A;  1V5S A;  2DKC A;  4WX8 A;  1TGH A;  1D3U A;  2NLV A;  2QRC A;  3CVT A;  1K2Y X;  1TBP A;  1YQM A;  1R4X A;  4EJY A;  1P5G X;  1VTO A;  1W80 A;  1PCZ A;  4DUL A;  1EBM A;  1FN7 A;  3DPT A;  2H4L X;  1NVP A;  5IYD P;  1PZD A;  4EAJ A;  1TUO A;  1VKL A;  3TE5 A;  5F9C A;  1QTP A;  1YQL A;  3KTU A; 
#chains in the Genus database with same CATH homology
 1KFI A;  5HSH A;  1C4G A;  2FUV A;  3NA5 A;  3PMG A;  1KFQ A;  1C47 A;  1JDY A;  2DKA A;  3UW2 A;  4MRQ A;  3ENO C;  4WXA A;  3C04 A;  3I3W A;  2DKC A;  4WX8 A;  4BJU A;  1PCJ X;  2Z0F A;  2F7L A;  5JMV D;  3OLP A;  4QG5 A;  3PDK A;  1K2Y X;  1WQA A;  2DKD A;  5EPC A;  1P5G X;  5BMN A;  1LXT A;  2EIU A;  2EHP A;  2FKM X;  2H5A X;  2H4L X;  1P5D X;  2FKF A;  4HJH A;  1PCM X;  1WJW A;  1TUO A;  5BMP A;  3RSM A;  1K35 A;  1VKL A;  3BKQ X;  5KL0 A;  5F9C A;  2JPI A;  4IL8 A;  3ENC A;  5JN5 A; 
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