1PCJ | Genus

Total Genus 172

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	172
sequence length	458
structure length	457
Chain Sequence	APTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Isomerase
source organism	Pseudomonas aeruginosa
publication title	Structural basis of diverse substrate recognition by the enzyme PMM/PGM from P. aeruginosa. pubmed doi rcsb
molecule keywords	Phosphomannomutase
total genus	172
structure length	457
sequence length	458
ec nomenclature	ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date	2003-05-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF00408	PGM_PMM_IV	Phosphoglucomutase/phosphomannomutase, C-terminal domain
X	PF02878	PGM_PMM_I	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X	PF02879	PGM_PMM_II	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X	PF02880	PGM_PMM_III	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	1pcjX04
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	1pcjX03
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	1pcjX01
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	1pcjX02

1KFQA 1LXTA 1K35A 2FKFA 1WQAA 2Z0FA 5F9CA 1PCJX 1KFIA 1C4GA 4QG5A 5JN5A 4WX8A 1P5DX 2FKMX 3ENCA 1K2YX 5BMNA 3PMGA 3ENOC 4HJHA 2H5AX 2EIUA 2FUVA 2F7LA 2EHPA 1P5GX 2JPIA 3PDKA 5EPCA 3BKQX 1PCMX 3C04A 5KL0A 3NA5A 3UW2A 2DKCA 2DKDA 5JMVD 3OLPA 1JDYA 2DKAA 1VKLA 1WJWA 4IL8A 3RSMA 4BJUA 5BMPA 4WXAA 1C47A 2H4LX 5HSHA 3I3WA 1TUOA 4MRQA
chains in the Genus database with same CATH superfamily

2QRDA 1KO9A 2OOXA 1PVSA 2D0BA 1R4XA 2HZMA 1QNCA 1YQRA 2V8QA 1UT4A 3OSTA 1KYFA 1K2YX 4B0AA 1W80A 2MJ7A 1KY6A 2H5AX 1YTBA 2FUVA 1XSZA 3F0ZA 2EHPA 5EPCA 4ROEB 3UW2A 2LAEA 2NVMA 3CW7A 2DKCA 2EHBD 5JMVD 3OLPA 2Z8UA 1T6AA 3KTUA 2V9JA 1QTPA 4I8OA 4BJUA 3HS9A 1LWWA 3CWAA 4WXAA 3CWTA 3OSEA 1TGHA 1LWYA 5AN4A 5IYCP 3CWUA 2NOLA 4PY5A 4MRQA 1PCZA 1LXTA 2QRCA 2FKFA 2NOFA 1KY7A 3I0WA 1YQMA 2Z0FA 4RODB 1N3AA 2HL8A 1NGMA 2O3OA 1KFIA 4DULA 2NOIA 1C4GA 4QG5A 1RM1A 2G30A 1P5DX 1J3MA 1QTSA 2FKMX 3EIKA 3ENCA 4Q11A 5BMNA 2XHIA 4HJHA 1YTFA 2EIUA 1MP9A 2FGTA 2JOIA 2YH5A 3OGDA 2IV8A 2NLVA 3OH6A 1YQKA 5KL0A 3NA5A 1UL7A 3DPUA 3CVSA 3OCIA 2MZ8A 2JHNA 1B9KA 2VJ0A 4EALA 2Y8QA 1VKLA 1M3HA 1UT7A 3ULXA 1WJWA 1QN6A 1KYDA 1NVPA 3RPJA 1VTLE 1EBMA 4ROCB 2H4LX 3KRMA 2JHJA 3OH9A 2I5WA 1LWVA 1D3UA 1KFQA 1K35A 1VTOA 1WQAA 2NOBA 1CDWA 5F9CA 2IV9A 3EAYA 2R5XA 1AISA 2V92A 2OOYA 3F10A 5IYBP 1C9BB 3ENOC 1YQLA 3TDHA 2JPIA 4TPSA 1FN7A 2NWVA 2D0AA 3C04A 3N89A 1QNAA 1Q9UA 4WZSD 4EAJA 4C7PA 3TE5A 2DKDA 1QN4A 1JDYA 2DKAA 1QNEA 2ZFDB 1HU0A 2HKPA 2HL9A 1DIZA 5HSHA 4EAIA 3I3WA 3D7QA 3I0XA 1TUOA 3BKQX 4D7RA 4EAGA 1N39A 1VOKA 4EAKA 3DPTA 2NOZA 3H1ZA 2Y8LA 1PCJX 3CVTA 3OC3C 5JN5A 1QN9A 1EUVA 1V5SA 2QR1A 4WX8A 4EJYA 3OSMA 3CWSA 3PMGA 2PWWA 1QNBA 3D4VA 1N3CA 1QN7A 2NOHA 2F7LA 1P5GX 3PDKA 1M3QA 1QN5A 1PCMX 2YA3A 2HZSA 4CFFA 3VN5A 1TBPA 4D7QA 3IH7A 1QN8A 4EJZA 3ASMA 1JFIC 1E42A 1KYUA 4IL8A 3RSMA 5BMPA 1QN3A 1PZDA 2QREA 5IYDP 1C47A 2D0CA 3HS8A 3SNSA 3T4NA 1NH2A 1VOLB 1M5Q1 2NOEA 1MPGA 1TBAB 2QLVA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1KFQ A;  1LXT A;  1K35 A;  2FKF A;  1WQA A;  2Z0F A;  5F9C A;  1PCJ X;  1KFI A;  1C4G A;  4QG5 A;  5JN5 A;  4WX8 A;  1P5D X;  2FKM X;  3ENC A;  1K2Y X;  5BMN A;  3PMG A;  3ENO C;  4HJH A;  2H5A X;  2EIU A;  2FUV A;  2F7L A;  2EHP A;  1P5G X;  2JPI A;  3PDK A;  5EPC A;  3BKQ X;  1PCM X;  3C04 A;  5KL0 A;  3NA5 A;  3UW2 A;  2DKC A;  2DKD A;  5JMV D;  3OLP A;  1JDY A;  2DKA A;  1VKL A;  1WJW A;  4IL8 A;  3RSM A;  4BJU A;  5BMP A;  4WXA A;  1C47 A;  2H4L X;  5HSH A;  3I3W A;  1TUO A;  4MRQ A; 
#chains in the Genus database with same CATH topology
 2QRD A;  1KO9 A;  2OOX A;  1PVS A;  2D0B A;  1R4X A;  2HZM A;  1QNC A;  1YQR A;  2V8Q A;  1UT4 A;  3OST A;  1KYF A;  1K2Y X;  4B0A A;  1W80 A;  2MJ7 A;  1KY6 A;  2H5A X;  1YTB A;  2FUV A;  1XSZ A;  3F0Z A;  2EHP A;  5EPC A;  4ROE B;  3UW2 A;  2LAE A;  2NVM A;  3CW7 A;  2DKC A;  2EHB D;  5JMV D;  3OLP A;  2Z8U A;  1T6A A;  3KTU A;  2V9J A;  1QTP A;  4I8O A;  4BJU A;  3HS9 A;  1LWW A;  3CWA A;  4WXA A;  3CWT A;  3OSE A;  1TGH A;  1LWY A;  5AN4 A;  5IYC P;  3CWU A;  2NOL A;  4PY5 A;  4MRQ A;  1PCZ A;  1LXT A;  2QRC A;  2FKF A;  2NOF A;  1KY7 A;  3I0W A;  1YQM A;  2Z0F A;  4ROD B;  1N3A A;  2HL8 A;  1NGM A;  2O3O A;  1KFI A;  4DUL A;  2NOI A;  1C4G A;  4QG5 A;  1RM1 A;  2G30 A;  1P5D X;  1J3M A;  1QTS A;  2FKM X;  3EIK A;  3ENC A;  4Q11 A;  5BMN A;  2XHI A;  4HJH A;  1YTF A;  2EIU A;  1MP9 A;  2FGT A;  2JOI A;  2YH5 A;  3OGD A;  2IV8 A;  2NLV A;  3OH6 A;  1YQK A;  5KL0 A;  3NA5 A;  1UL7 A;  3DPU A;  3CVS A;  3OCI A;  2MZ8 A;  2JHN A;  1B9K A;  2VJ0 A;  4EAL A;  2Y8Q A;  1VKL A;  1M3H A;  1UT7 A;  3ULX A;  1WJW A;  1QN6 A;  1KYD A;  1NVP A;  3RPJ A;  1VTL E;  1EBM A;  4ROC B;  2H4L X;  3KRM A;  2JHJ A;  3OH9 A;  2I5W A;  1LWV A;  1D3U A;  1KFQ A;  1K35 A;  1VTO A;  1WQA A;  2NOB A;  1CDW A;  5F9C A;  2IV9 A;  3EAY A;  2R5X A;  1AIS A;  2V92 A;  2OOY A;  3F10 A;  5IYB P;  1C9B B;  3ENO C;  1YQL A;  3TDH A;  2JPI A;  4TPS A;  1FN7 A;  2NWV A;  2D0A A;  3C04 A;  3N89 A;  1QNA A;  1Q9U A;  4WZS D;  4EAJ A;  4C7P A;  3TE5 A;  2DKD A;  1QN4 A;  1JDY A;  2DKA A;  1QNE A;  2ZFD B;  1HU0 A;  2HKP A;  2HL9 A;  1DIZ A;  5HSH A;  4EAI A;  3I3W A;  3D7Q A;  3I0X A;  1TUO A;  3BKQ X;  4D7R A;  4EAG A;  1N39 A;  1VOK A;  4EAK A;  3DPT A;  2NOZ A;  3H1Z A;  2Y8L A;  1PCJ X;  3CVT A;  3OC3 C;  5JN5 A;  1QN9 A;  1EUV A;  1V5S A;  2QR1 A;  4WX8 A;  4EJY A;  3OSM A;  3CWS A;  3PMG A;  2PWW A;  1QNB A;  3D4V A;  1N3C A;  1QN7 A;  2NOH A;  2F7L A;  1P5G X;  3PDK A;  1M3Q A;  1QN5 A;  1PCM X;  2YA3 A;  2HZS A;  4CFF A;  3VN5 A;  1TBP A;  4D7Q A;  3IH7 A;  1QN8 A;  4EJZ A;  3ASM A;  1JFI C;  1E42 A;  1KYU A;  4IL8 A;  3RSM A;  5BMP A;  1QN3 A;  1PZD A;  2QRE A;  5IYD P;  1C47 A;  2D0C A;  3HS8 A;  3SNS A;  3T4N A;  1NH2 A;  1VOL B;  1M5Q 1;  2NOE A;  1MPG A;  1TBA B;  2QLV A; 
#chains in the Genus database with same CATH homology
 1KFQ A;  1LXT A;  1K35 A;  2FKF A;  1WQA A;  2Z0F A;  5F9C A;  1PCJ X;  1KFI A;  1C4G A;  4QG5 A;  5JN5 A;  4WX8 A;  1P5D X;  2FKM X;  3ENC A;  1K2Y X;  5BMN A;  3PMG A;  3ENO C;  4HJH A;  2H5A X;  2EIU A;  2FUV A;  2F7L A;  2EHP A;  1P5G X;  2JPI A;  3PDK A;  5EPC A;  3BKQ X;  1PCM X;  3C04 A;  5KL0 A;  3NA5 A;  3UW2 A;  2DKC A;  2DKD A;  5JMV D;  3OLP A;  1JDY A;  2DKA A;  1VKL A;  1WJW A;  4IL8 A;  3RSM A;  4BJU A;  5BMP A;  4WXA A;  1C47 A;  2H4L X;  5HSH A;  3I3W A;  1TUO A;  4MRQ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1PCJX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations