1PCM | Genus

Total Genus 168

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	168
sequence length	455
structure length	454
Chain Sequence	LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Isomerase
source organism	Pseudomonas aeruginosa
publication title	Structural basis of diverse substrate recognition by the enzyme PMM/PGM from P. aeruginosa. pubmed doi rcsb
molecule keywords	Phosphomannomutase
total genus	168
structure length	454
sequence length	455
ec nomenclature	ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date	2003-05-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF00408	PGM_PMM_IV	Phosphoglucomutase/phosphomannomutase, C-terminal domain
X	PF02878	PGM_PMM_I	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
X	PF02879	PGM_PMM_II	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
X	PF02880	PGM_PMM_III	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	1pcmX04
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	1pcmX03
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	1pcmX01
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	1pcmX02

1TUOA 2DKAA 1K35A 5JN5A 4WX8A 1K2YX 5JMVD 5BMPA 1LXTA 1PCMX 2JPIA 2EIUA 3PMGA 5KL0A 4MRQA 4BJUA 1KFIA 4WXAA 5EPCA 2FKMX 2Z0FA 3I3WA 2FKFA 4QG5A 1VKLA 2DKDA 2F7LA 3RSMA 2FUVA 3NA5A 5F9CA 1C47A 1C4GA 1WQAA 3UW2A 2H5AX 3OLPA 3BKQX 3ENOC 2H4LX 1JDYA 1P5DX 1P5GX 2DKCA 4IL8A 5BMNA 5HSHA 3PDKA 1WJWA 2EHPA 3C04A 3ENCA 1KFQA 4HJHA 1PCJX
chains in the Genus database with same CATH superfamily

3CWTA 2DKAA 1QNBA 1B9KA 2HZSA 4WX8A 3I0XA 1QN6A 1K2YX 1QN5A 1KYDA 5IYDP 1NH2A 2LAEA 5BMPA 3ULXA 3F10A 4EAKA 1QTPA 3SNSA 4BJUA 5EPCA 3RPJA 2HL9A 1R4XA 2Z8UA 1QN9A 3OLPA 3BKQX 2H4LX 1JDYA 4C7PA 1N3AA 1FN7A 1KYFA 1T6AA 1V5SA 2HKPA 5BMNA 1JFIC 1NGMA 1YQMA 4WZSD 4EAJA 2EHPA 1YQKA 3ASMA 4EJZA 1M5Q1 1KFQA 4HJHA 3OH6A 2MJ7A 1PCJX 1D3UA 2O3OA 2HZMA 3EAYA 1DIZA 1EUVA 5IYCP 1W80A 3OSTA 3OGDA 2YH5A 1KY7A 2Y8QA 5JN5A 2NOHA 2NOLA 4I8OA 3OCIA 1M3QA 1LXTA 2JPIA 2G30A 2OOXA 3D7QA 3PMGA 3N89A 5KL0A 4ROCB 4EAGA 2IV9A 2EIUA 1Q9UA 2I5WA 3I3WA 3T4NA 1VKLA 2D0AA 3RSMA 2NOFA 3D4VA 1UT4A 3NA5A 1VOKA 1UL7A 2H5AX 2QRDA 2NOEA 1TBPA 3I0WA 2V92A 4B0AA 4EALA 4DULA 1N3CA 2NWVA 2QREA 1YTBA 1YQRA 1KYUA 1C9BB 3ENCA 2Y8LA 2NOBA 1QN7A 4Q11A 1XSZA 3IH7A 3VN5A 1TUOA 3HS9A 2NOZA 2D0BA 1LWYA 1KY6A 3CWAA 1VTOA 1N39A 2HL8A 1PCMX 2V9JA 3EIKA 4MRQA 3CVTA 1LWWA 1KFIA 3DPUA 4WXAA 1QNCA 1UT7A 2Z0FA 2MZ8A 1MPGA 1E42A 2DKDA 2FUVA 3DPTA 1RM1A 5F9CA 1C4GA 1WQAA 2EHBD 1KO9A 5AN4A 1MP9A 3UW2A 1QN4A 3ENOC 2D0CA 3CWSA 1QNEA 2DKCA 3H1ZA 4PY5A 3TE5A 2PWWA 5HSHA 3PDKA 1QN3A 3TDHA 3C04A 2V8QA 3CVSA 2QR1A 3KTUA 3KRMA 1TGHA 4RODB 2NOIA 2NVMA 2ZFDB 4CFFA 1VOLB 1K35A 1YTFA 1PCZA 2IV8A 1AISA 1QTSA 5JMVD 1YQLA 3OH9A 3CW7A 2NLVA 1NVPA 2FGTA 4EJYA 2QRCA 2JHJA 4TPSA 2VJ0A 4EAIA 1LWVA 2FKMX 2FKFA 4QG5A 4D7QA 2YA3A 2F7LA 2R5XA 4D7RA 5IYBP 2JHNA 2XHIA 1C47A 1TBAB 3OC3C 1PZDA 3HS8A 4ROEB 1PVSA 2QLVA 1HU0A 2OOYA 3CWUA 1J3MA 1P5DX 1QN8A 1P5GX 1EBMA 4IL8A 1M3HA 1WJWA 3F0ZA 3OSMA 1VTLE 3OSEA 1CDWA 1QNAA 2JOIA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1TUO A;  2DKA A;  1K35 A;  5JN5 A;  4WX8 A;  1K2Y X;  5JMV D;  5BMP A;  1LXT A;  1PCM X;  2JPI A;  2EIU A;  3PMG A;  5KL0 A;  4MRQ A;  4BJU A;  1KFI A;  4WXA A;  5EPC A;  2FKM X;  2Z0F A;  3I3W A;  2FKF A;  4QG5 A;  1VKL A;  2DKD A;  2F7L A;  3RSM A;  2FUV A;  3NA5 A;  5F9C A;  1C47 A;  1C4G A;  1WQA A;  3UW2 A;  2H5A X;  3OLP A;  3BKQ X;  3ENO C;  2H4L X;  1JDY A;  1P5D X;  1P5G X;  2DKC A;  4IL8 A;  5BMN A;  5HSH A;  3PDK A;  1WJW A;  2EHP A;  3C04 A;  3ENC A;  1KFQ A;  4HJH A;  1PCJ X; 
#chains in the Genus database with same CATH topology
 3CWT A;  2DKA A;  1QNB A;  1B9K A;  2HZS A;  4WX8 A;  3I0X A;  1QN6 A;  1K2Y X;  1QN5 A;  1KYD A;  5IYD P;  1NH2 A;  2LAE A;  5BMP A;  3ULX A;  3F10 A;  4EAK A;  1QTP A;  3SNS A;  4BJU A;  5EPC A;  3RPJ A;  2HL9 A;  1R4X A;  2Z8U A;  1QN9 A;  3OLP A;  3BKQ X;  2H4L X;  1JDY A;  4C7P A;  1N3A A;  1FN7 A;  1KYF A;  1T6A A;  1V5S A;  2HKP A;  5BMN A;  1JFI C;  1NGM A;  1YQM A;  4WZS D;  4EAJ A;  2EHP A;  1YQK A;  3ASM A;  4EJZ A;  1M5Q 1;  1KFQ A;  4HJH A;  3OH6 A;  2MJ7 A;  1PCJ X;  1D3U A;  2O3O A;  2HZM A;  3EAY A;  1DIZ A;  1EUV A;  5IYC P;  1W80 A;  3OST A;  3OGD A;  2YH5 A;  1KY7 A;  2Y8Q A;  5JN5 A;  2NOH A;  2NOL A;  4I8O A;  3OCI A;  1M3Q A;  1LXT A;  2JPI A;  2G30 A;  2OOX A;  3D7Q A;  3PMG A;  3N89 A;  5KL0 A;  4ROC B;  4EAG A;  2IV9 A;  2EIU A;  1Q9U A;  2I5W A;  3I3W A;  3T4N A;  1VKL A;  2D0A A;  3RSM A;  2NOF A;  3D4V A;  1UT4 A;  3NA5 A;  1VOK A;  1UL7 A;  2H5A X;  2QRD A;  2NOE A;  1TBP A;  3I0W A;  2V92 A;  4B0A A;  4EAL A;  4DUL A;  1N3C A;  2NWV A;  2QRE A;  1YTB A;  1YQR A;  1KYU A;  1C9B B;  3ENC A;  2Y8L A;  2NOB A;  1QN7 A;  4Q11 A;  1XSZ A;  3IH7 A;  3VN5 A;  1TUO A;  3HS9 A;  2NOZ A;  2D0B A;  1LWY A;  1KY6 A;  3CWA A;  1VTO A;  1N39 A;  2HL8 A;  1PCM X;  2V9J A;  3EIK A;  4MRQ A;  3CVT A;  1LWW A;  1KFI A;  3DPU A;  4WXA A;  1QNC A;  1UT7 A;  2Z0F A;  2MZ8 A;  1MPG A;  1E42 A;  2DKD A;  2FUV A;  3DPT A;  1RM1 A;  5F9C A;  1C4G A;  1WQA A;  2EHB D;  1KO9 A;  5AN4 A;  1MP9 A;  3UW2 A;  1QN4 A;  3ENO C;  2D0C A;  3CWS A;  1QNE A;  2DKC A;  3H1Z A;  4PY5 A;  3TE5 A;  2PWW A;  5HSH A;  3PDK A;  1QN3 A;  3TDH A;  3C04 A;  2V8Q A;  3CVS A;  2QR1 A;  3KTU A;  3KRM A;  1TGH A;  4ROD B;  2NOI A;  2NVM A;  2ZFD B;  4CFF A;  1VOL B;  1K35 A;  1YTF A;  1PCZ A;  2IV8 A;  1AIS A;  1QTS A;  5JMV D;  1YQL A;  3OH9 A;  3CW7 A;  2NLV A;  1NVP A;  2FGT A;  4EJY A;  2QRC A;  2JHJ A;  4TPS A;  2VJ0 A;  4EAI A;  1LWV A;  2FKM X;  2FKF A;  4QG5 A;  4D7Q A;  2YA3 A;  2F7L A;  2R5X A;  4D7R A;  5IYB P;  2JHN A;  2XHI A;  1C47 A;  1TBA B;  3OC3 C;  1PZD A;  3HS8 A;  4ROE B;  1PVS A;  2QLV A;  1HU0 A;  2OOY A;  3CWU A;  1J3M A;  1P5D X;  1QN8 A;  1P5G X;  1EBM A;  4IL8 A;  1M3H A;  1WJW A;  3F0Z A;  3OSM A;  1VTL E;  3OSE A;  1CDW A;  1QNA A;  2JOI A; 
#chains in the Genus database with same CATH homology
 1TUO A;  2DKA A;  1K35 A;  5JN5 A;  4WX8 A;  1K2Y X;  5JMV D;  5BMP A;  1LXT A;  1PCM X;  2JPI A;  2EIU A;  3PMG A;  5KL0 A;  4MRQ A;  4BJU A;  1KFI A;  4WXA A;  5EPC A;  2FKM X;  2Z0F A;  3I3W A;  2FKF A;  4QG5 A;  1VKL A;  2DKD A;  2F7L A;  3RSM A;  2FUV A;  3NA5 A;  5F9C A;  1C47 A;  1C4G A;  1WQA A;  3UW2 A;  2H5A X;  3OLP A;  3BKQ X;  3ENO C;  2H4L X;  1JDY A;  1P5D X;  1P5G X;  2DKC A;  4IL8 A;  5BMN A;  5HSH A;  3PDK A;  1WJW A;  2EHP A;  3C04 A;  3ENC A;  1KFQ A;  4HJH A;  1PCJ X;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1PCMX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations