2FUV | Genus

Total Genus 182

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	182
sequence length	545
structure length	545
Chain Sequence	AIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANALLAGGLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQHRPLWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 545 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Isomerase
source organism	Salmonella typhimurium
publication title	X-ray crystal structure of phosphoglucomutase from Salmonella typhimurium. rcsb
molecule keywords	phosphoglucomutase
total genus	182
structure length	545
sequence length	545
chains with identical sequence	B
ec nomenclature	ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date	2006-01-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00408	PGM_PMM_IV	Phosphoglucomutase/phosphomannomutase, C-terminal domain
A	PF02878	PGM_PMM_I	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A	PF02879	PGM_PMM_II	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A	PF02880	PGM_PMM_III	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	2fuvA04
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	2fuvA03
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	2fuvA02
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	2fuvA01

2H5AX 3OLPA 2H4LX 5JN5A 4WXAA 3BKQX 5BMPA 1WJWA 3RSMA 1P5GX 1K2YX 2FUVA 3ENOC 3NA5A 2F7LA 1P5DX 2Z0FA 2DKDA 1KFIA 4WX8A 1WQAA 3UW2A 4QG5A 3PDKA 4BJUA 5EPCA 2DKAA 5BMNA 4HJHA 5F9CA 1C47A 4MRQA 1KFQA 3C04A 1JDYA 5HSHA 1VKLA 2JPIA 1PCJX 2FKMX 2EIUA 1C4GA 2EHPA 4IL8A 1TUOA 3PMGA 1K35A 3I3WA 3ENCA 5KL0A 5JMVD 2DKCA 1PCMX 2FKFA 1LXTA
chains in the Genus database with same CATH superfamily

1W80A 1TBAB 5JN5A 2NWVA 2FGTA 2OOXA 2QRCA 3OC3C 1VTLE 1T6AA 3HS8A 1NH2A 2NOZA 2HL9A 1TBPA 3CWTA 1QN3A 2D0CA 2HZMA 2V92A 1YQKA 1QTPA 4WX8A 3ULXA 4B0AA 4WZSD 3UW2A 1KY7A 4QG5A 3TDHA 1QNCA 3F10A 5F9CA 1VOLB 2QR1A 1KFQA 3C04A 3OGDA 4PY5A 1VKLA 1NVPA 2D0AA 2EHPA 2PWWA 3PMGA 5IYCP 3I3WA 1R4XA 5JMVD 5KL0A 3CWSA 1N3CA 3EIKA 1MP9A 1KYDA 2H5AX 3SNSA 2NOFA 2NOIA 2V9JA 2NOBA 4WXAA 1YTBA 3RSMA 3KTUA 1WJWA 4Q11A 1UT7A 1LWWA 1P5GX 4EJYA 4EJZA 1B9KA 1K2YX 2HL8A 3OSMA 4EALA 3NA5A 2F7LA 1KYUA 1M5Q1 1P5DX 2QREA 2Z0FA 1QNBA 1KYFA 2LAEA 3D4VA 1M3HA 1KFIA 2HKPA 2JHNA 3F0ZA 3OSEA 4CFFA 1KY6A 3DPTA 2JOIA 3RPJA 5EPCA 2V8QA 5BMNA 3CWUA 1C47A 3I0WA 1JDYA 1MPGA 1PCJX 2ZFDB 1QN6A 2O3OA 3IH7A 3ASMA 1QNEA 1C4GA 2NLVA 2EIUA 2EHBD 3T4NA 3ENCA 1FN7A 5IYBP 4I8OA 1VOKA 1PCMX 2FKFA 2G30A 1D3UA 1LXTA 3OCIA 1QN5A 2QLVA 1QNAA 1TGHA 4ROCB 2MJ7A 3CWAA 4DULA 3OH9A 1UT4A 3BKQX 1M3QA 2NOEA 4D7RA 4EAIA 3CVTA 4TPSA 3H1ZA 1VTOA 1JFIC 1EBMA 4EAJA 1CDWA 1DIZA 3CVSA 1XSZA 4EAKA 3HS9A 1LWYA 3CW7A 2Y8LA 3OH6A 1QN4A 3DPUA 1Q9UA 4C7PA 1YQMA 2D0BA 1C9BB 5IYDP 3VN5A 4BJUA 1N3AA 2QRDA 1HU0A 2DKAA 1PZDA 1AISA 1UL7A 2NOLA 1RM1A 2JHJA 2JPIA 2I5WA 1YQRA 2IV8A 1N39A 2Y8QA 1QTSA 3OSTA 1K35A 2Z8UA 1QN9A 1V5SA 3OLPA 2H4LX 4EAGA 2XHIA 5BMPA 2NOHA 2FUVA 4D7QA 2IV9A 3N89A 3ENOC 1E42A 1J3MA 2DKDA 1YQLA 3KRMA 2R5XA 2HZSA 1WQAA 2NVMA 2MZ8A 3I0XA 1PCZA 1EUVA 3PDKA 1NGMA 5AN4A 4RODB 3D7QA 2VJ0A 4HJHA 4MRQA 5HSHA 2FKMX 3TE5A 2YH5A 4IL8A 1TUOA 1LWVA 1QN7A 2OOYA 1QN8A 1YTFA 4ROEB 2DKCA 2YA3A 1PVSA 3EAYA 1KO9A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2H5A X;  3OLP A;  2H4L X;  5JN5 A;  4WXA A;  3BKQ X;  5BMP A;  1WJW A;  3RSM A;  1P5G X;  1K2Y X;  2FUV A;  3ENO C;  3NA5 A;  2F7L A;  1P5D X;  2Z0F A;  2DKD A;  1KFI A;  4WX8 A;  1WQA A;  3UW2 A;  4QG5 A;  3PDK A;  4BJU A;  5EPC A;  2DKA A;  5BMN A;  4HJH A;  5F9C A;  1C47 A;  4MRQ A;  1KFQ A;  3C04 A;  1JDY A;  5HSH A;  1VKL A;  2JPI A;  1PCJ X;  2FKM X;  2EIU A;  1C4G A;  2EHP A;  4IL8 A;  1TUO A;  3PMG A;  1K35 A;  3I3W A;  3ENC A;  5KL0 A;  5JMV D;  2DKC A;  1PCM X;  2FKF A;  1LXT A; 
#chains in the Genus database with same CATH topology
 1W80 A;  1TBA B;  5JN5 A;  2NWV A;  2FGT A;  2OOX A;  2QRC A;  3OC3 C;  1VTL E;  1T6A A;  3HS8 A;  1NH2 A;  2NOZ A;  2HL9 A;  1TBP A;  3CWT A;  1QN3 A;  2D0C A;  2HZM A;  2V92 A;  1YQK A;  1QTP A;  4WX8 A;  3ULX A;  4B0A A;  4WZS D;  3UW2 A;  1KY7 A;  4QG5 A;  3TDH A;  1QNC A;  3F10 A;  5F9C A;  1VOL B;  2QR1 A;  1KFQ A;  3C04 A;  3OGD A;  4PY5 A;  1VKL A;  1NVP A;  2D0A A;  2EHP A;  2PWW A;  3PMG A;  5IYC P;  3I3W A;  1R4X A;  5JMV D;  5KL0 A;  3CWS A;  1N3C A;  3EIK A;  1MP9 A;  1KYD A;  2H5A X;  3SNS A;  2NOF A;  2NOI A;  2V9J A;  2NOB A;  4WXA A;  1YTB A;  3RSM A;  3KTU A;  1WJW A;  4Q11 A;  1UT7 A;  1LWW A;  1P5G X;  4EJY A;  4EJZ A;  1B9K A;  1K2Y X;  2HL8 A;  3OSM A;  4EAL A;  3NA5 A;  2F7L A;  1KYU A;  1M5Q 1;  1P5D X;  2QRE A;  2Z0F A;  1QNB A;  1KYF A;  2LAE A;  3D4V A;  1M3H A;  1KFI A;  2HKP A;  2JHN A;  3F0Z A;  3OSE A;  4CFF A;  1KY6 A;  3DPT A;  2JOI A;  3RPJ A;  5EPC A;  2V8Q A;  5BMN A;  3CWU A;  1C47 A;  3I0W A;  1JDY A;  1MPG A;  1PCJ X;  2ZFD B;  1QN6 A;  2O3O A;  3IH7 A;  3ASM A;  1QNE A;  1C4G A;  2NLV A;  2EIU A;  2EHB D;  3T4N A;  3ENC A;  1FN7 A;  5IYB P;  4I8O A;  1VOK A;  1PCM X;  2FKF A;  2G30 A;  1D3U A;  1LXT A;  3OCI A;  1QN5 A;  2QLV A;  1QNA A;  1TGH A;  4ROC B;  2MJ7 A;  3CWA A;  4DUL A;  3OH9 A;  1UT4 A;  3BKQ X;  1M3Q A;  2NOE A;  4D7R A;  4EAI A;  3CVT A;  4TPS A;  3H1Z A;  1VTO A;  1JFI C;  1EBM A;  4EAJ A;  1CDW A;  1DIZ A;  3CVS A;  1XSZ A;  4EAK A;  3HS9 A;  1LWY A;  3CW7 A;  2Y8L A;  3OH6 A;  1QN4 A;  3DPU A;  1Q9U A;  4C7P A;  1YQM A;  2D0B A;  1C9B B;  5IYD P;  3VN5 A;  4BJU A;  1N3A A;  2QRD A;  1HU0 A;  2DKA A;  1PZD A;  1AIS A;  1UL7 A;  2NOL A;  1RM1 A;  2JHJ A;  2JPI A;  2I5W A;  1YQR A;  2IV8 A;  1N39 A;  2Y8Q A;  1QTS A;  3OST A;  1K35 A;  2Z8U A;  1QN9 A;  1V5S A;  3OLP A;  2H4L X;  4EAG A;  2XHI A;  5BMP A;  2NOH A;  2FUV A;  4D7Q A;  2IV9 A;  3N89 A;  3ENO C;  1E42 A;  1J3M A;  2DKD A;  1YQL A;  3KRM A;  2R5X A;  2HZS A;  1WQA A;  2NVM A;  2MZ8 A;  3I0X A;  1PCZ A;  1EUV A;  3PDK A;  1NGM A;  5AN4 A;  4ROD B;  3D7Q A;  2VJ0 A;  4HJH A;  4MRQ A;  5HSH A;  2FKM X;  3TE5 A;  2YH5 A;  4IL8 A;  1TUO A;  1LWV A;  1QN7 A;  2OOY A;  1QN8 A;  1YTF A;  4ROE B;  2DKC A;  2YA3 A;  1PVS A;  3EAY A;  1KO9 A; 
#chains in the Genus database with same CATH homology
 2H5A X;  3OLP A;  2H4L X;  5JN5 A;  4WXA A;  3BKQ X;  5BMP A;  1WJW A;  3RSM A;  1P5G X;  1K2Y X;  2FUV A;  3ENO C;  3NA5 A;  2F7L A;  1P5D X;  2Z0F A;  2DKD A;  1KFI A;  4WX8 A;  1WQA A;  3UW2 A;  4QG5 A;  3PDK A;  4BJU A;  5EPC A;  2DKA A;  5BMN A;  4HJH A;  5F9C A;  1C47 A;  4MRQ A;  1KFQ A;  3C04 A;  1JDY A;  5HSH A;  1VKL A;  2JPI A;  1PCJ X;  2FKM X;  2EIU A;  1C4G A;  2EHP A;  4IL8 A;  1TUO A;  3PMG A;  1K35 A;  3I3W A;  3ENC A;  5KL0 A;  5JMV D;  2DKC A;  1PCM X;  2FKF A;  1LXT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2FUVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations