3C04 | Genus

Total Genus 169

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	169
sequence length	458
structure length	457
Chain Sequence	APTLPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFGSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 457 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Isomerase
source organism	Pseudomonas aeruginosa
publication title	Backbone flexibility, conformational change, and catalysis in a phosphohexomutase from Pseudomonas aeruginosa. pubmed doi rcsb
molecule keywords	Phosphomannomutase/phosphoglucomutase
total genus	169
structure length	457
sequence length	458
ec nomenclature	ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date	2008-01-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00408	PGM_PMM_IV	Phosphoglucomutase/phosphomannomutase, C-terminal domain
A	PF02878	PGM_PMM_I	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A	PF02879	PGM_PMM_II	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A	PF02880	PGM_PMM_III	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	3c04A04
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	3c04A03
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	3c04A01
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	3c04A02

1C47A 1PCMX 2DKCA 1PCJX 2FUVA 3PDKA 3C04A 3NA5A 2DKAA 3I3WA 2H5AX 1P5GX 3PMGA 2EHPA 5F9CA 4BJUA 3ENCA 2EIUA 3UW2A 1KFIA 5BMNA 4HJHA 4WX8A 5JMVD 2Z0FA 4WXAA 2H4LX 5JN5A 1K35A 5BMPA 2FKFA 3BKQX 2DKDA 1C4GA 3ENOC 5EPCA 5KL0A 3RSMA 2FKMX 2JPIA 1K2YX 1P5DX 1VKLA 1WJWA 1WQAA 4IL8A 5HSHA 1KFQA 1TUOA 4MRQA 2F7LA 1LXTA 1JDYA 4QG5A 3OLPA
chains in the Genus database with same CATH superfamily

1QN8A 1C47A 1YQRA 1QN6A 3H1ZA 1QTSA 1LWVA 3NA5A 2DKAA 2XHIA 3I3WA 1TBAB 1P5GX 4EJZA 5F9CA 4DULA 3OGDA 5BMNA 1FN7A 4D7RA 2LAEA 4WXAA 3HS9A 2FGTA 2EHBD 2IV9A 4EAKA 1QNEA 2G30A 1LWWA 1D3UA 1UT7A 3ASMA 2Y8QA 2Z8UA 3DPUA 2DKDA 2IV8A 5EPCA 5KL0A 3KTUA 2R5XA 2JPIA 4EAJA 1P5DX 3D4VA 1KO9A 1WJWA 4IL8A 1QNCA 3N89A 5HSHA 1QNBA 1TUOA 2Y8LA 2NOIA 3CWTA 1EBMA 4QG5A 1KY7A 2O3OA 1PCMX 2DKCA 2NOEA 2JOIA 2VJ0A 3OSTA 2D0CA 1XSZA 2ZFDB 2H5AX 2EHPA 1HU0A 1VTLE 2D0AA 3ENCA 3HS8A 1C9BB 2NVMA 3OC3C 4WX8A 5JMVD 5IYDP 2QLVA 4WZSD 1YTFA 2JHNA 1M5Q1 5JN5A 3IH7A 4D7QA 2OOYA 3TE5A 4PY5A 2NOZA 5BMPA 1QNAA 3I0XA 4Q11A 1QTPA 2FKFA 2I5WA 1QN4A 1EUVA 4EALA 1PVSA 3ENOC 4EAIA 2FKMX 1K2YX 4B0AA 1N3AA 3OH9A 1KFQA 2YA3A 3DPTA 1LXTA 1VTOA 2QRDA 4ROEB 3OLPA 1YQKA 1N3CA 4RODB 2NOBA 1QN9A 1PCJX 2NWVA 3D7QA 2MZ8A 3PMGA 5AN4A 2NOHA 2NLVA 3ULXA 1TBPA 3UW2A 1B9KA 3CVSA 1NGMA 3SNSA 1QN5A 2D0BA 2QRCA 4HJHA 4EAGA 2HL8A 1PZDA 2V92A 3CWAA 3CW7A 1KYUA 1DIZA 1KYDA 3I0WA 2HZMA 1QN3A 1QN7A 2NOFA 5IYCP 1C4GA 3EAYA 1PCZA 1T6AA 2V8QA 3KRMA 1J3MA 4TPSA 1V5SA 3RSMA 3T4NA 2QREA 2MJ7A 1VKLA 4I8OA 1CDWA 3CWSA 1MPGA 3CWUA 4MRQA 2HL9A 2F7LA 4C7PA 2NOLA 1MP9A 2FUVA 1LWYA 3F10A 1Q9UA 3C04A 3PDKA 1RM1A 1YQLA 3TDHA 1VOKA 3EIKA 4BJUA 1M3QA 1N39A 1NH2A 1KFIA 2YH5A 1TGHA 2JHJA 3OSMA 3CVTA 1W80A 4ROCB 2Z0FA 1NVPA 3VN5A 2PWWA 2H4LX 1M3HA 1K35A 3F0ZA 2HZSA 2OOXA 1E42A 5IYBP 3BKQX 3OH6A 1KYFA 2QR1A 1YTBA 1AISA 1UT4A 2HKPA 4CFFA 1KY6A 1R4XA 3OSEA 4EJYA 1WQAA 2V9JA 1UL7A 3OCIA 1VOLB 1JDYA 1YQMA 2EIUA 1JFIC 3RPJA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1C47 A;  1PCM X;  2DKC A;  1PCJ X;  2FUV A;  3PDK A;  3C04 A;  3NA5 A;  2DKA A;  3I3W A;  2H5A X;  1P5G X;  3PMG A;  2EHP A;  5F9C A;  4BJU A;  3ENC A;  2EIU A;  3UW2 A;  1KFI A;  5BMN A;  4HJH A;  4WX8 A;  5JMV D;  2Z0F A;  4WXA A;  2H4L X;  5JN5 A;  1K35 A;  5BMP A;  2FKF A;  3BKQ X;  2DKD A;  1C4G A;  3ENO C;  5EPC A;  5KL0 A;  3RSM A;  2FKM X;  2JPI A;  1K2Y X;  1P5D X;  1VKL A;  1WJW A;  1WQA A;  4IL8 A;  5HSH A;  1KFQ A;  1TUO A;  4MRQ A;  2F7L A;  1LXT A;  1JDY A;  4QG5 A;  3OLP A; 
#chains in the Genus database with same CATH topology
 1QN8 A;  1C47 A;  1YQR A;  1QN6 A;  3H1Z A;  1QTS A;  1LWV A;  3NA5 A;  2DKA A;  2XHI A;  3I3W A;  1TBA B;  1P5G X;  4EJZ A;  5F9C A;  4DUL A;  3OGD A;  5BMN A;  1FN7 A;  4D7R A;  2LAE A;  4WXA A;  3HS9 A;  2FGT A;  2EHB D;  2IV9 A;  4EAK A;  1QNE A;  2G30 A;  1LWW A;  1D3U A;  1UT7 A;  3ASM A;  2Y8Q A;  2Z8U A;  3DPU A;  2DKD A;  2IV8 A;  5EPC A;  5KL0 A;  3KTU A;  2R5X A;  2JPI A;  4EAJ A;  1P5D X;  3D4V A;  1KO9 A;  1WJW A;  4IL8 A;  1QNC A;  3N89 A;  5HSH A;  1QNB A;  1TUO A;  2Y8L A;  2NOI A;  3CWT A;  1EBM A;  4QG5 A;  1KY7 A;  2O3O A;  1PCM X;  2DKC A;  2NOE A;  2JOI A;  2VJ0 A;  3OST A;  2D0C A;  1XSZ A;  2ZFD B;  2H5A X;  2EHP A;  1HU0 A;  1VTL E;  2D0A A;  3ENC A;  3HS8 A;  1C9B B;  2NVM A;  3OC3 C;  4WX8 A;  5JMV D;  5IYD P;  2QLV A;  4WZS D;  1YTF A;  2JHN A;  1M5Q 1;  5JN5 A;  3IH7 A;  4D7Q A;  2OOY A;  3TE5 A;  4PY5 A;  2NOZ A;  5BMP A;  1QNA A;  3I0X A;  4Q11 A;  1QTP A;  2FKF A;  2I5W A;  1QN4 A;  1EUV A;  4EAL A;  1PVS A;  3ENO C;  4EAI A;  2FKM X;  1K2Y X;  4B0A A;  1N3A A;  3OH9 A;  1KFQ A;  2YA3 A;  3DPT A;  1LXT A;  1VTO A;  2QRD A;  4ROE B;  3OLP A;  1YQK A;  1N3C A;  4ROD B;  2NOB A;  1QN9 A;  1PCJ X;  2NWV A;  3D7Q A;  2MZ8 A;  3PMG A;  5AN4 A;  2NOH A;  2NLV A;  3ULX A;  1TBP A;  3UW2 A;  1B9K A;  3CVS A;  1NGM A;  3SNS A;  1QN5 A;  2D0B A;  2QRC A;  4HJH A;  4EAG A;  2HL8 A;  1PZD A;  2V92 A;  3CWA A;  3CW7 A;  1KYU A;  1DIZ A;  1KYD A;  3I0W A;  2HZM A;  1QN3 A;  1QN7 A;  2NOF A;  5IYC P;  1C4G A;  3EAY A;  1PCZ A;  1T6A A;  2V8Q A;  3KRM A;  1J3M A;  4TPS A;  1V5S A;  3RSM A;  3T4N A;  2QRE A;  2MJ7 A;  1VKL A;  4I8O A;  1CDW A;  3CWS A;  1MPG A;  3CWU A;  4MRQ A;  2HL9 A;  2F7L A;  4C7P A;  2NOL A;  1MP9 A;  2FUV A;  1LWY A;  3F10 A;  1Q9U A;  3C04 A;  3PDK A;  1RM1 A;  1YQL A;  3TDH A;  1VOK A;  3EIK A;  4BJU A;  1M3Q A;  1N39 A;  1NH2 A;  1KFI A;  2YH5 A;  1TGH A;  2JHJ A;  3OSM A;  3CVT A;  1W80 A;  4ROC B;  2Z0F A;  1NVP A;  3VN5 A;  2PWW A;  2H4L X;  1M3H A;  1K35 A;  3F0Z A;  2HZS A;  2OOX A;  1E42 A;  5IYB P;  3BKQ X;  3OH6 A;  1KYF A;  2QR1 A;  1YTB A;  1AIS A;  1UT4 A;  2HKP A;  4CFF A;  1KY6 A;  1R4X A;  3OSE A;  4EJY A;  1WQA A;  2V9J A;  1UL7 A;  3OCI A;  1VOL B;  1JDY A;  1YQM A;  2EIU A;  1JFI C;  3RPJ A; 
#chains in the Genus database with same CATH homology
 1C47 A;  1PCM X;  2DKC A;  1PCJ X;  2FUV A;  3PDK A;  3C04 A;  3NA5 A;  2DKA A;  3I3W A;  2H5A X;  1P5G X;  3PMG A;  2EHP A;  5F9C A;  4BJU A;  3ENC A;  2EIU A;  3UW2 A;  1KFI A;  5BMN A;  4HJH A;  4WX8 A;  5JMV D;  2Z0F A;  4WXA A;  2H4L X;  5JN5 A;  1K35 A;  5BMP A;  2FKF A;  3BKQ X;  2DKD A;  1C4G A;  3ENO C;  5EPC A;  5KL0 A;  3RSM A;  2FKM X;  2JPI A;  1K2Y X;  1P5D X;  1VKL A;  1WJW A;  1WQA A;  4IL8 A;  5HSH A;  1KFQ A;  1TUO A;  4MRQ A;  2F7L A;  1LXT A;  1JDY A;  4QG5 A;  3OLP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3C04A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations