3DPPA

Crystal structure of the substrate binding domain of e. coli dnak in complex with a long pyrrhocoricin-derived inhibitor peptide (form a)
Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
212
structure length
212
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone, peptide binding protein
source organism Escherichia coli
publication title Allosteric coupling between the lid and interdomain linker in DnaK revealed by inhibitor binding studies.
pubmed doi rcsb
molecule keywords Chaperone protein dnaK
total genus 55
structure length 212
sequence length 212
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-07-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3dppA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 3dppA01
1DKYA 4JN4A 3N8EA 4JWCA 4WV5A 3T47A 1DG4A 3C7NB 4EZYA 3DPOA 4R5LA 4PO2A 2OP6A 4EZNA 2WINM 4B9QA 2QFFA 1YUWA 4H6IA 4EZSA 7HSCA 3D2EA 1CKRA 1U00A 3L3OM 4JWDA 3DPQA 5TKYA 4JWEA 4EZPA 3DQGA 4EZTA 4JWIA 3DPPA 3D2FA 4EZRA 2KHOA 3C7NA 4EZUA 4EZVA 2BPRA 4JNEA 5E84A 1DKXA 2QXLA 3T4AG 4EZZA 3QNJA 4R5KA 4EZQA 3T48A 2V7YA 4HY9A 4R5JA 3DOBA 4F01A 4WV7A 4H6HA 3OHXM 3T49A 4R5IA 3T46A 1Q5LA 4R5GA 4HYBA 4EZWA 4E81A 1DKZA 4EZOA 4EZXA 4F00A 4FL9A 4JNFA 3H0XA 1BPRA
chains in the Genus database with same CATH superfamily
4JN4A 3N8EA 3RV1A 4R5LA 4IWPA 4UDYX 4AZHA 4EZSA 2RAKA 4MQDA 2F1BA 3D2FA 4EZUA 4JNEA 4ILGA 3D4YA 3HAHA 3SBSA 1X04A 2YLAA 4WPCA 2V0OA 4FZSA 2RAJA 3FD9A 1HWWA 3C7NB 1GNTA 2PMRA 3ZEDA 2YKTA 1R33A 2YIBA 4JWEA 2Z0OA 3OWGA 3T4AG 3EJUA 2RAIA 3BLBA 1W9MA 4FM3A 3D4ZA 4JNFA 4IWQA 2OZNB 3D50A 4DYLA 1WDZA 4JL9A 3KDRA 2OP6A 4B9QA 3EJSA 2MI7A 4ATMA 2C08A 2ELBA 2JNKA 2F1AA 1ZYLA 3LLLA 1OA1A 2YL8A 4AZCB 3LVTA 3HAIA 3OK8A 1SU7A 2X5CA 3DX3A 4NSWA 3SBTB 4WPEA 4JLCA 4IM3A 3M3WA 1TQSA 4UDXX 3UITA 2D4CA 3RPMA 2OBMA 3DX2A 2D1LA 4FZPA 2YL5A 3EJPA 1I4TA 1R5EA 1QX1A 2Q13A 3OHXM 4R5IA 2YLLA 2YL9A 2YI8A 3KAVA 1QWUA 3BVTA 4ILIA 1JQKA 1R34A 3DYTA 1GNLA 3Q0KA 3GI7A 2JNSA 4EZVA 3LMFA 4AZ7A 3ERCC 3CKDA 1HXKA 3T48A 4AZBA 3ER8C 3EJRA 1I4DA 4H6HA 1X03A 3DDFA 1DKZA 3CAZA 2ZXQA 3CZSA 3PLTA 3BUDA 4I43A 4E3CA 4D8JA 4WV5A 3I39X 1LQ7A 4EZNA 1CKRA 2KHOA 3C7NA 2GA9D 3O3MB 2YI9A 4EZQA 2Z0VA 3QE6A 2Z8YA 4AZIA 2FICA 4EZOA 1O7DC 2F7OA 2YIAA 3Q84A 3D2EA 3BVUA 5E84A 4NQIA 1E9VA 2WYHA 4BNEA 3BVWA 3A98A 1DG4A 1OAOA 4AZCA 1PS3A 1TQUA 1U00A 4EZPA 3CVRA 2QXLA 3I01A 4HR1B 3EJQA 3EJTA 1Q5LA 4EZWA 5C5BB 4AZ6A 3ACOA 1OA0A 2X3XA 3SYVA 2RT6A 4PO2A 4I1QA 2OW7A 2N3KA 2OBLA 2PY6A 2EFLA 2X3VA 3D51A 1QWNA 4EZRA 2F7RA 2LXYA 1DKXA 4R5KA 4F01A 4WV7A 3T46A 3DX0A 4ILHB 1SU8A 1O7DB 2NCZA 1SUFA 5TKYA 4IWOA 2O0I1 3F7WA 3B52X 4R5JA 2YL6A 2EFKA 3KAWA 3L3PA 4EZXA 4NPHA 3VEAA 2OW6A 4FL9A 3H0XA 1BPRA 1DKYA 2ND0A 3DPOA 2WINM 4G6QA 3CV5A 1TQWA 4H6IA 1SU6A 3DPPA 4EZZA 3DDGA 1Y2OA 1TQVA 2QKWA 2GAFD 4KIKB 2EWFA 3I04A 3RV0A 4AKVA 4EZYA 1YWMA 2OO2A 4M0MA 3VEBA 3QNIA 3D52A 3L3OM 4EZTA 3VKHA 2YIVX 5FLEX 4IW0A 4HY9A 3T49A 1E1DA 5KBPA 3BUIA 4AVMA 2F7QA 3ABHA 4HR1A 2ALWA 4IM0A 2QFFA 5C5BA 4JWDA 4FZOA 3BVVA 2BPRA 1E2UA 1MJGA 3HAJA 1TQTA 4HYBA 4F00A 1URUA 3QWEA 3ER9B 3T47A 4DCNC 2GF4A 1YUWA 7HSCA 4AZGA 2FYVA 3DQGA 3ZEFA 1UPXA 1HTYA 3CZNA 1ZWWA 3BUQA 5FIGA 2ND1A 4AZ5A 1I4LA 4IM2A 3BVXA 4E81A 2F18A 2F7PA 3B51X 3G9GA 2WYIA 2Q12A 4JWIA 2EX3B 1GN9A 3QNJA 3B53X 3DX1A 3QA8A 2X3WA 3SOGA 4JWCA 3BUPA 4H8SA 3I2WA 3O3NB 4KIKA 1I49A 3DPQA 2LM0A 3BUBA 3DX4A 2Z0NA 2V7YA 3DOBA 4R5GA 3O3OB
chains in the Genus database with same CATH topology
3KAVA 4JN4A 3N8EA 2RT6A 4HR1A 3RV1A 4R5LA 4PO2A 4IWPA 4IM0A 4UDYX 2QFFA 2N3KA 2OBLA 2PY6A 4EZSA 4ILIA 1JQKA 4MQDA 4JWDA 1GNLA 3GI7A 3D2FA 4EZRA 4EZUA 2JNSA 4EZVA 3LMFA 2BPRA 4JNEA 4ILGA 1DKXA 4R5KA 3SBSA 3ERCC 3T48A 1E2UA 4F01A 1MJGA 3ER8C 4WV7A 4H6HA 3T46A 4ILHB 4HYBA 1DKZA 1SU8A 4F00A 3FD9A 3ER9B 4I43A 4E3CA 4D8JA 4WV5A 3T47A 3I39X 3C7NB 1GNTA 4EZNA 2NCZA 3ZEDA 1YUWA 7HSCA 1CKRA 1SUFA 2YIBA 5TKYA 3DQGA 4JWEA 3ZEFA 4IWOA 1UPXA 2KHOA 3C7NA 3OWGA 2GA9D 3F7WA 5FIGA 3O3MB 3B52X 2ND1A 3T4AG 2YI9A 4EZQA 4R5JA 2Z8YA 4IM2A 1W9MA 3KAWA 4FM3A 4E81A 4EZOA 4EZXA 4NPHA 3VEAA 4FL9A 4JNFA 3H0XA 4IWQA 1DKYA 3B51X 1BPRA 2YIAA 2ND0A 3DPOA 4JL9A 3KDRA 2OP6A 2WINM 4G6QA 4B9QA 4H6IA 3D2EA 1SU6A 4JWIA 3DPPA 1ZYLA 2EX3B 5E84A 4EZZA 1GN9A 1E9VA 3QNJA 1OA1A 3B53X 2GAFD 3A98A 4KIKB 3QA8A 2EWFA 3I04A 3RV0A 1SU7A 2X5CA 4JWCA 1DG4A 4EZYA 1OAOA 3SBTB 3O3NB 4M0MA 3VEBA 4JLCA 4IM3A 4KIKA 4UDXX 3UITA 1U00A 2OBMA 3L3OM 3DPQA 4EZPA 4EZTA 3VKHA 2LM0A 2YIVX 5FLEX 2QXLA 3I01A 4IW0A 2V7YA 4HY9A 3DOBA 4HR1B 3OHXM 3T49A 4R5IA 1Q5LA 4R5GA 1E1DA 3O3OB 4EZWA 2YI8A 1OA0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DKY A;  4JN4 A;  3N8E A;  4JWC A;  4WV5 A;  3T47 A;  1DG4 A;  3C7N B;  4EZY A;  3DPO A;  4R5L A;  4PO2 A;  2OP6 A;  4EZN A;  2WIN M;  4B9Q A;  2QFF A;  1YUW A;  4H6I A;  4EZS A;  7HSC A;  3D2E A;  1CKR A;  1U00 A;  3L3O M;  4JWD A;  3DPQ A;  5TKY A;  4JWE A;  4EZP A;  3DQG A;  4EZT A;  4JWI A;  3DPP A;  3D2F A;  4EZR A;  2KHO A;  3C7N A;  4EZU A;  4EZV A;  2BPR A;  4JNE A;  5E84 A;  1DKX A;  2QXL A;  3T4A G;  4EZZ A;  3QNJ A;  4R5K A;  4EZQ A;  3T48 A;  2V7Y A;  4HY9 A;  4R5J A;  3DOB A;  4F01 A;  4WV7 A;  4H6H A;  3OHX M;  3T49 A;  4R5I A;  3T46 A;  1Q5L A;  4R5G A;  4HYB A;  4EZW A;  4E81 A;  1DKZ A;  4EZO A;  4EZX A;  4F00 A;  4FL9 A;  4JNF A;  3H0X A;  1BPR A; 
#chains in the Genus database with same CATH topology
 4JN4 A;  3N8E A;  3RV1 A;  4R5L A;  4IWP A;  4UDY X;  4AZH A;  4EZS A;  2RAK A;  4MQD A;  2F1B A;  3D2F A;  4EZU A;  4JNE A;  4ILG A;  3D4Y A;  3HAH A;  3SBS A;  1X04 A;  2YLA A;  4WPC A;  2V0O A;  4FZS A;  2RAJ A;  3FD9 A;  1HWW A;  3C7N B;  1GNT A;  2PMR A;  3ZED A;  2YKT A;  1R33 A;  2YIB A;  4JWE A;  2Z0O A;  3OWG A;  3T4A G;  3EJU A;  2RAI A;  3BLB A;  1W9M A;  4FM3 A;  3D4Z A;  4JNF A;  4IWQ A;  2OZN B;  3D50 A;  4DYL A;  1WDZ A;  4JL9 A;  3KDR A;  2OP6 A;  4B9Q A;  3EJS A;  2MI7 A;  4ATM A;  2C08 A;  2ELB A;  2JNK A;  2F1A A;  1ZYL A;  3LLL A;  1OA1 A;  2YL8 A;  4AZC B;  3LVT A;  3HAI A;  3OK8 A;  1SU7 A;  2X5C A;  3DX3 A;  4NSW A;  3SBT B;  4WPE A;  4JLC A;  4IM3 A;  3M3W A;  1TQS A;  4UDX X;  3UIT A;  2D4C A;  3RPM A;  2OBM A;  3DX2 A;  2D1L A;  4FZP A;  2YL5 A;  3EJP A;  1I4T A;  1R5E A;  1QX1 A;  2Q13 A;  3OHX M;  4R5I A;  2YLL A;  2YL9 A;  2YI8 A;  3KAV A;  1QWU A;  3BVT A;  4ILI A;  1JQK A;  1R34 A;  3DYT A;  1GNL A;  3Q0K A;  3GI7 A;  2JNS A;  4EZV A;  3LMF A;  4AZ7 A;  3ERC C;  3CKD A;  1HXK A;  3T48 A;  4AZB A;  3ER8 C;  3EJR A;  1I4D A;  4H6H A;  1X03 A;  3DDF A;  1DKZ A;  3CAZ A;  2ZXQ A;  3CZS A;  3PLT A;  3BUD A;  4I43 A;  4E3C A;  4D8J A;  4WV5 A;  3I39 X;  1LQ7 A;  4EZN A;  1CKR A;  2KHO A;  3C7N A;  2GA9 D;  3O3M B;  2YI9 A;  4EZQ A;  2Z0V A;  3QE6 A;  2Z8Y A;  4AZI A;  2FIC A;  4EZO A;  1O7D C;  2F7O A;  2YIA A;  3Q84 A;  3D2E A;  3BVU A;  5E84 A;  4NQI A;  1E9V A;  2WYH A;  4BNE A;  3BVW A;  3A98 A;  1DG4 A;  1OAO A;  4AZC A;  1PS3 A;  1TQU A;  1U00 A;  4EZP A;  3CVR A;  2QXL A;  3I01 A;  4HR1 B;  3EJQ A;  3EJT A;  1Q5L A;  4EZW A;  5C5B B;  4AZ6 A;  3ACO A;  1OA0 A;  2X3X A;  3SYV A;  2RT6 A;  4PO2 A;  4I1Q A;  2OW7 A;  2N3K A;  2OBL A;  2PY6 A;  2EFL A;  2X3V A;  3D51 A;  1QWN A;  4EZR A;  2F7R A;  2LXY A;  1DKX A;  4R5K A;  4F01 A;  4WV7 A;  3T46 A;  3DX0 A;  4ILH B;  1SU8 A;  1O7D B;  2NCZ A;  1SUF A;  5TKY A;  4IWO A;  2O0I 1;  3F7W A;  3B52 X;  4R5J A;  2YL6 A;  2EFK A;  3KAW A;  3L3P A;  4EZX A;  4NPH A;  3VEA A;  2OW6 A;  4FL9 A;  3H0X A;  1BPR A;  1DKY A;  2ND0 A;  3DPO A;  2WIN M;  4G6Q A;  3CV5 A;  1TQW A;  4H6I A;  1SU6 A;  3DPP A;  4EZZ A;  3DDG A;  1Y2O A;  1TQV A;  2QKW A;  2GAF D;  4KIK B;  2EWF A;  3I04 A;  3RV0 A;  4AKV A;  4EZY A;  1YWM A;  2OO2 A;  4M0M A;  3VEB A;  3QNI A;  3D52 A;  3L3O M;  4EZT A;  3VKH A;  2YIV X;  5FLE X;  4IW0 A;  4HY9 A;  3T49 A;  1E1D A;  5KBP A;  3BUI A;  4AVM A;  2F7Q A;  3ABH A;  4HR1 A;  2ALW A;  4IM0 A;  2QFF A;  5C5B A;  4JWD A;  4FZO A;  3BVV A;  2BPR A;  1E2U A;  1MJG A;  3HAJ A;  1TQT A;  4HYB A;  4F00 A;  1URU A;  3QWE A;  3ER9 B;  3T47 A;  4DCN C;  2GF4 A;  1YUW A;  7HSC A;  4AZG A;  2FYV A;  3DQG A;  3ZEF A;  1UPX A;  1HTY A;  3CZN A;  1ZWW A;  3BUQ A;  5FIG A;  2ND1 A;  4AZ5 A;  1I4L A;  4IM2 A;  3BVX A;  4E81 A;  2F18 A;  2F7P A;  3B51 X;  3G9G A;  2WYI A;  2Q12 A;  4JWI A;  2EX3 B;  1GN9 A;  3QNJ A;  3B53 X;  3DX1 A;  3QA8 A;  2X3W A;  3SOG A;  4JWC A;  3BUP A;  4H8S A;  3I2W A;  3O3N B;  4KIK A;  1I49 A;  3DPQ A;  2LM0 A;  3BUB A;  3DX4 A;  2Z0N A;  2V7Y A;  3DOB A;  4R5G A;  3O3O B; 
#chains in the Genus database with same CATH homology
 3KAV A;  4JN4 A;  3N8E A;  2RT6 A;  4HR1 A;  3RV1 A;  4R5L A;  4PO2 A;  4IWP A;  4IM0 A;  4UDY X;  2QFF A;  2N3K A;  2OBL A;  2PY6 A;  4EZS A;  4ILI A;  1JQK A;  4MQD A;  4JWD A;  1GNL A;  3GI7 A;  3D2F A;  4EZR A;  4EZU A;  2JNS A;  4EZV A;  3LMF A;  2BPR A;  4JNE A;  4ILG A;  1DKX A;  4R5K A;  3SBS A;  3ERC C;  3T48 A;  1E2U A;  4F01 A;  1MJG A;  3ER8 C;  4WV7 A;  4H6H A;  3T46 A;  4ILH B;  4HYB A;  1DKZ A;  1SU8 A;  4F00 A;  3FD9 A;  3ER9 B;  4I43 A;  4E3C A;  4D8J A;  4WV5 A;  3T47 A;  3I39 X;  3C7N B;  1GNT A;  4EZN A;  2NCZ A;  3ZED A;  1YUW A;  7HSC A;  1CKR A;  1SUF A;  2YIB A;  5TKY A;  3DQG A;  4JWE A;  3ZEF A;  4IWO A;  1UPX A;  2KHO A;  3C7N A;  3OWG A;  2GA9 D;  3F7W A;  5FIG A;  3O3M B;  3B52 X;  2ND1 A;  3T4A G;  2YI9 A;  4EZQ A;  4R5J A;  2Z8Y A;  4IM2 A;  1W9M A;  3KAW A;  4FM3 A;  4E81 A;  4EZO A;  4EZX A;  4NPH A;  3VEA A;  4FL9 A;  4JNF A;  3H0X A;  4IWQ A;  1DKY A;  3B51 X;  1BPR A;  2YIA A;  2ND0 A;  3DPO A;  4JL9 A;  3KDR A;  2OP6 A;  2WIN M;  4G6Q A;  4B9Q A;  4H6I A;  3D2E A;  1SU6 A;  4JWI A;  3DPP A;  1ZYL A;  2EX3 B;  5E84 A;  4EZZ A;  1GN9 A;  1E9V A;  3QNJ A;  1OA1 A;  3B53 X;  2GAF D;  3A98 A;  4KIK B;  3QA8 A;  2EWF A;  3I04 A;  3RV0 A;  1SU7 A;  2X5C A;  4JWC A;  1DG4 A;  4EZY A;  1OAO A;  3SBT B;  3O3N B;  4M0M A;  3VEB A;  4JLC A;  4IM3 A;  4KIK A;  4UDX X;  3UIT A;  1U00 A;  2OBM A;  3L3O M;  3DPQ A;  4EZP A;  4EZT A;  3VKH A;  2LM0 A;  2YIV X;  5FLE X;  2QXL A;  3I01 A;  4IW0 A;  2V7Y A;  4HY9 A;  3DOB A;  4HR1 B;  3OHX M;  3T49 A;  4R5I A;  1Q5L A;  4R5G A;  1E1D A;  3O3O B;  4EZW A;  2YI8 A;  1OA0 A; 
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