3OLP | Genus

Total Genus 181

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	181
sequence length	543
structure length	543
Chain Sequence	AIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGTSGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANALLAGGLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQHRPLWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARPSGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 543 atoms

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543 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Isomerase
source organism	Salmonella typhimurium
publication title	Crystal structure of a bacterial phosphoglucomutase, an enzyme involved in the virulence of multiple human pathogens. pubmed doi rcsb
molecule keywords	Phosphoglucomutase
total genus	181
structure length	543
sequence length	543
chains with identical sequence	B
ec nomenclature	ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date	2010-08-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00408	PGM_PMM_IV	Phosphoglucomutase/phosphomannomutase, C-terminal domain
A	PF02878	PGM_PMM_I	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A	PF02879	PGM_PMM_II	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A	PF02880	PGM_PMM_III	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	3olpA04
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	3olpA03
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	3olpA02
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	3olpA01

1WJWA 2EHPA 1P5DX 4MRQA 3PMGA 1JDYA 2FUVA 5KL0A 1C4GA 2H4LX 2F7LA 3C04A 5HSHA 4IL8A 5BMNA 2Z0FA 3ENCA 3OLPA 1C47A 1KFIA 2DKAA 1P5GX 3ENOC 5JN5A 2FKFA 1K2YX 3BKQX 2EIUA 1K35A 5JMVD 3I3WA 1VKLA 5EPCA 3UW2A 4WXAA 1LXTA 1PCJX 2FKMX 2DKCA 1TUOA 2H5AX 3NA5A 4QG5A 1WQAA 5F9CA 4HJHA 1KFQA 2DKDA 2JPIA 1PCMX 4WX8A 5BMPA 3RSMA 4BJUA 3PDKA
chains in the Genus database with same CATH superfamily

1R4XA 1P5DX 1LWVA 3PMGA 2R5XA 2JHNA 2D0BA 1M5Q1 1VTOA 1KO9A 3CVTA 3D7QA 5HSHA 4IL8A 2HZSA 4C7PA 3ENCA 4B0AA 4EALA 1C47A 3OH9A 1PZDA 2V92A 4WZSD 2QREA 1NH2A 1P5GX 4EAIA 1QN9A 3TDHA 1K2YX 4EAGA 2NVMA 1KY7A 1KY6A 5IYCP 3N89A 5JMVD 2OOYA 2NOEA 3IH7A 3CW7A 1VKLA 2FKMX 1PCZA 1NGMA 1W80A 2IV8A 3OC3C 4CFFA 4HJHA 1KFQA 1QNBA 1PCMX 3RSMA 1YQRA 4D7QA 2JOIA 1YTFA 1C9BB 1AISA 2NOLA 1JFIC 3ASMA 3DPUA 1UL7A 5IYBP 4MRQA 1QNCA 4ROCB 1D3UA 3CWTA 4TPSA 5KL0A 1KYDA 1M3HA 2F7LA 3ULXA 1CDWA 3KTUA 3DPTA 1UT7A 1QTSA 3H1ZA 2D0AA 4EJYA 1MPGA 3OGDA 3I0WA 1K35A 2Y8LA 1KYFA 2NOBA 1TBAB 3T4NA 2QRDA 1XSZA 2MJ7A 2YH5A 1N39A 1EBMA 2NWVA 5AN4A 1QNEA 1QN6A 2Y8QA 1WQAA 4EAKA 1V5SA 4BJUA 3CVSA 3TE5A 3CWAA 2HZMA 2G30A 3KRMA 3PDKA 1WJWA 1M3QA 1QN5A 2EHPA 3CWSA 3VN5A 1EUVA 3F10A 2VJ0A 1JDYA 1Q9UA 3HS9A 1QN4A 1C4GA 2H4LX 4D7RA 4EAJA 3C04A 3RPJA 1YQKA 2QR1A 1QN8A 3OH6A 3OLPA 1KFIA 3OSMA 2V8QA 5JN5A 3OCIA 1TGHA 2FKFA 2NOHA 1E42A 4EJZA 1QN7A 3BKQX 4RODB 2EIUA 2ZFDB 1QN3A 1VTLE 1KYUA 2V9JA 5EPCA 2XHIA 2PWWA 4PY5A 1LXTA 2YA3A 2IV9A 1PCJX 2H5AX 3CWUA 1TUOA 2HL8A 3OSTA 1DIZA 1TBPA 2EHBD 2HKPA 2DKDA 2JPIA 5BMPA 1YTBA 2I5WA 1LWWA 2NOIA 3EAYA 1YQMA 4DULA 1VOLB 2NOFA 1HU0A 5IYDP 1VOKA 4I8OA 2MZ8A 2FUVA 4Q11A 2QLVA 2HL9A 1T6AA 1MP9A 2QRCA 4ROEB 1QTPA 2JHJA 2Z0FA 5BMNA 3D4VA 1RM1A 1YQLA 1N3AA 3OSEA 2DKAA 3ENOC 1J3MA 3F0ZA 1NVPA 1QNAA 3I0XA 3SNSA 3I3WA 2Z8UA 3UW2A 2NLVA 2OOXA 1UT4A 4WXAA 2NOZA 3EIKA 1PVSA 2DKCA 4QG5A 2O3OA 3NA5A 2LAEA 1B9KA 5F9CA 3HS8A 1LWYA 1FN7A 4WX8A 2FGTA 1N3CA 2D0CA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1WJW A;  2EHP A;  1P5D X;  4MRQ A;  3PMG A;  1JDY A;  2FUV A;  5KL0 A;  1C4G A;  2H4L X;  2F7L A;  3C04 A;  5HSH A;  4IL8 A;  5BMN A;  2Z0F A;  3ENC A;  3OLP A;  1C47 A;  1KFI A;  2DKA A;  1P5G X;  3ENO C;  5JN5 A;  2FKF A;  1K2Y X;  3BKQ X;  2EIU A;  1K35 A;  5JMV D;  3I3W A;  1VKL A;  5EPC A;  3UW2 A;  4WXA A;  1LXT A;  1PCJ X;  2FKM X;  2DKC A;  1TUO A;  2H5A X;  3NA5 A;  4QG5 A;  1WQA A;  5F9C A;  4HJH A;  1KFQ A;  2DKD A;  2JPI A;  1PCM X;  4WX8 A;  5BMP A;  3RSM A;  4BJU A;  3PDK A; 
#chains in the Genus database with same CATH topology
 1R4X A;  1P5D X;  1LWV A;  3PMG A;  2R5X A;  2JHN A;  2D0B A;  1M5Q 1;  1VTO A;  1KO9 A;  3CVT A;  3D7Q A;  5HSH A;  4IL8 A;  2HZS A;  4C7P A;  3ENC A;  4B0A A;  4EAL A;  1C47 A;  3OH9 A;  1PZD A;  2V92 A;  4WZS D;  2QRE A;  1NH2 A;  1P5G X;  4EAI A;  1QN9 A;  3TDH A;  1K2Y X;  4EAG A;  2NVM A;  1KY7 A;  1KY6 A;  5IYC P;  3N89 A;  5JMV D;  2OOY A;  2NOE A;  3IH7 A;  3CW7 A;  1VKL A;  2FKM X;  1PCZ A;  1NGM A;  1W80 A;  2IV8 A;  3OC3 C;  4CFF A;  4HJH A;  1KFQ A;  1QNB A;  1PCM X;  3RSM A;  1YQR A;  4D7Q A;  2JOI A;  1YTF A;  1C9B B;  1AIS A;  2NOL A;  1JFI C;  3ASM A;  3DPU A;  1UL7 A;  5IYB P;  4MRQ A;  1QNC A;  4ROC B;  1D3U A;  3CWT A;  4TPS A;  5KL0 A;  1KYD A;  1M3H A;  2F7L A;  3ULX A;  1CDW A;  3KTU A;  3DPT A;  1UT7 A;  1QTS A;  3H1Z A;  2D0A A;  4EJY A;  1MPG A;  3OGD A;  3I0W A;  1K35 A;  2Y8L A;  1KYF A;  2NOB A;  1TBA B;  3T4N A;  2QRD A;  1XSZ A;  2MJ7 A;  2YH5 A;  1N39 A;  1EBM A;  2NWV A;  5AN4 A;  1QNE A;  1QN6 A;  2Y8Q A;  1WQA A;  4EAK A;  1V5S A;  4BJU A;  3CVS A;  3TE5 A;  3CWA A;  2HZM A;  2G30 A;  3KRM A;  3PDK A;  1WJW A;  1M3Q A;  1QN5 A;  2EHP A;  3CWS A;  3VN5 A;  1EUV A;  3F10 A;  2VJ0 A;  1JDY A;  1Q9U A;  3HS9 A;  1QN4 A;  1C4G A;  2H4L X;  4D7R A;  4EAJ A;  3C04 A;  3RPJ A;  1YQK A;  2QR1 A;  1QN8 A;  3OH6 A;  3OLP A;  1KFI A;  3OSM A;  2V8Q A;  5JN5 A;  3OCI A;  1TGH A;  2FKF A;  2NOH A;  1E42 A;  4EJZ A;  1QN7 A;  3BKQ X;  4ROD B;  2EIU A;  2ZFD B;  1QN3 A;  1VTL E;  1KYU A;  2V9J A;  5EPC A;  2XHI A;  2PWW A;  4PY5 A;  1LXT A;  2YA3 A;  2IV9 A;  1PCJ X;  2H5A X;  3CWU A;  1TUO A;  2HL8 A;  3OST A;  1DIZ A;  1TBP A;  2EHB D;  2HKP A;  2DKD A;  2JPI A;  5BMP A;  1YTB A;  2I5W A;  1LWW A;  2NOI A;  3EAY A;  1YQM A;  4DUL A;  1VOL B;  2NOF A;  1HU0 A;  5IYD P;  1VOK A;  4I8O A;  2MZ8 A;  2FUV A;  4Q11 A;  2QLV A;  2HL9 A;  1T6A A;  1MP9 A;  2QRC A;  4ROE B;  1QTP A;  2JHJ A;  2Z0F A;  5BMN A;  3D4V A;  1RM1 A;  1YQL A;  1N3A A;  3OSE A;  2DKA A;  3ENO C;  1J3M A;  3F0Z A;  1NVP A;  1QNA A;  3I0X A;  3SNS A;  3I3W A;  2Z8U A;  3UW2 A;  2NLV A;  2OOX A;  1UT4 A;  4WXA A;  2NOZ A;  3EIK A;  1PVS A;  2DKC A;  4QG5 A;  2O3O A;  3NA5 A;  2LAE A;  1B9K A;  5F9C A;  3HS8 A;  1LWY A;  1FN7 A;  4WX8 A;  2FGT A;  1N3C A;  2D0C A; 
#chains in the Genus database with same CATH homology
 1WJW A;  2EHP A;  1P5D X;  4MRQ A;  3PMG A;  1JDY A;  2FUV A;  5KL0 A;  1C4G A;  2H4L X;  2F7L A;  3C04 A;  5HSH A;  4IL8 A;  5BMN A;  2Z0F A;  3ENC A;  3OLP A;  1C47 A;  1KFI A;  2DKA A;  1P5G X;  3ENO C;  5JN5 A;  2FKF A;  1K2Y X;  3BKQ X;  2EIU A;  1K35 A;  5JMV D;  3I3W A;  1VKL A;  5EPC A;  3UW2 A;  4WXA A;  1LXT A;  1PCJ X;  2FKM X;  2DKC A;  1TUO A;  2H5A X;  3NA5 A;  4QG5 A;  1WQA A;  5F9C A;  4HJH A;  1KFQ A;  2DKD A;  2JPI A;  1PCM X;  4WX8 A;  5BMP A;  3RSM A;  4BJU A;  3PDK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3OLPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations