3QNJA

Crystal structure of the substrate binding domain of e.coli dnak in complex with the antimicrobial peptide oncocin
Total Genus 54
2040608010012014016018020001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
210
structure length
204
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKL
2040608010012014016018020020015010050
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/antimicrobial protein
source organism Escherichia coli
publication title Rational Design of Oncocin Derivatives with Superior Protease Stabilities and Antibacterial Activities Based on the High-Resolution Structure of the Oncocin-DnaK Complex.
pubmed doi rcsb
molecule keywords Chaperone protein DnaK
total genus 54
structure length 204
sequence length 210
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-02-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3qnjA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 3qnjA01
3C7NA 3OHXM 4JWEA 4R5IA 1DG4A 4H6IA 1DKZA 3D2EA 4R5KA 3D2FA 4JNFA 4EZWA 2WINM 4EZUA 1BPRA 4JWIA 2OP6A 3C7NB 4JWCA 2V7YA 4EZPA 1CKRA 4JN4A 4R5GA 1DKYA 3H0XA 5E84A 7HSCA 3DOBA 4EZQA 4HY9A 3DPPA 4FL9A 3L3OM 4R5JA 4WV7A 3N8EA 3T48A 3DPQA 4EZYA 4JNEA 4R5LA 4HYBA 3QNJA 2BPRA 4WV5A 4EZNA 4EZRA 2KHOA 4EZVA 2QFFA 4JWDA 3T46A 1DKXA 4H6HA 2QXLA 4E81A 4PO2A 4EZSA 1U00A 5TKYA 3T47A 1YUWA 3DPOA 4B9QA 3DQGA 1Q5LA 4F01A 3T4AG 4EZXA 4EZZA 4F00A 3T49A 4EZTA 4EZOA
chains in the Genus database with same CATH superfamily
2OBMA 3L3PA 4JWEA 1E2UA 2ELBA 2YKTA 3D4ZA 2GA9D 2OO2A 3SYVA 4WV7A 1OA1A 3ZEDA 4AKVA 4M0MA 4ATMA 2F7PA 3C7NB 2C08A 4R5GA 3H0XA 2Z8YA 3BUIA 1HTYA 3ERCC 4R5LA 1GNTA 4EZNA 4EZVA 2QFFA 1OA0A 2YL5A 1U00A 1TQVA 2D1LA 1X03A 3RPMA 1HWWA 3EJUA 1I4DA 3D2FA 1OAOA 2Q13A 3D50A 2X5CA 3GI7A 3CKDA 3O3NB 3CZSA 2N3KA 3LVTA 2RAKA 3DPOA 1MJGA 4EZZA 2X3VA 1WDZA 4R5IA 2FICA 4FZOA 3D52A 2EWFA 1DKYA 2NCZA 4AZIA 3I04A 2Z0VA 3CVRA 4R5JA 4HR1A 3I39X 3G9GA 2WYIA 3T46A 3BUPA 3DDGA 3CV5A 2RAIA 3DX2A 4JWIA 4AZ7A 4EZPA 3DX3A 2YI8A 1GN9A 4FM3A 4DYLA 4D8JA 1TQSA 2ND0A 2Q12A 2QKWA 1I4LA 5TKYA 3BVUA 4IM3A 4NPHA 4UDXX 3T49A 4AZGA 3CAZA 2JNKA 1DG4A 3D2EA 1SU6A 4AZHA 1HXKA 2YIBA 2WINM 1BPRA 3SOGA 4AZ5A 2V7YA 4KIKA 2V0OA 3QWEA 2LM0A 4IWPA 5E84A 3I01A 3DPPA 3D51A 1R5EA 4WV5A 2KHOA 2X3XA 3BUBA 2ND1A 2WYHA 4E81A 2Z0NA 2O0I1 2YIAA 3I2WA 4EZOA 2YI9A 4AZBA 4IW0A 1DKZA 3BVWA 4JNFA 1QWUA 3B52X 3ER8C 1CKRA 4HY9A 4WPCA 5C5BB 2ALWA 3VEAA 3BVVA 1JQKA 4HR1B 3Q84A 3DDFA 3DQGA 3DX0A 1ZWWA 4MQDA 2YL6A 2GF4A 3RV1A 2YLAA 2X3WA 4IM2A 3QA8A 4AZCA 3N8EA 3T48A 3ABHA 3B53X 1DKXA 3DYTA 4AZ6A 3T4AG 2F7RA 3KDRA 3BVTA 4E3CA 3QE6A 1TQWA 4H8SA 3OWGA 2F7OA 1LQ7A 3DPQA 2OZNB 3CZNA 3QNIA 4F01A 2Z0OA 1O7DC 2PY6A 1E1DA 5FLEX 3C7NA 1SUFA 3M3WA 2YLLA 4H6IA 4NQIA 4EZUA 3PLTA 3SBSA 1X04A 4FZPA 4JLCA 3DOBA 3ER9B 3KAWA 3DX4A 4AVMA 3LMFA 1I49A 2D4CA 3EJPA 3O3MB 3HAJA 2F18A 3EJRA 1URUA 1UPXA 4G6QA 4IWQA 3B51X 2RT6A 3RV0A 2YL9A 4NSWA 2QXLA 4DCNC 2MI7A 3T47A 4ILHB 2JNSA 3BUQA 2EFLA 1R34A 3D4YA 4I1QA 3KAVA 1SU8A 4JN4A 7HSCA 1I4TA 4FL9A 3L3OM 1YWMA 4JL9A 1W9MA 4EZYA 3F7WA 4IWOA 2BPRA 4EZRA 1O7DB 3A98A 2GAFD 2OW7A 3EJTA 4F00A 1E9VA 4R5KA 4EZWA 3VEBA 2OP6A 2F1BA 4WPEA 4ILIA 3SBTB 3Q0KA 1QX1A 1TQUA 1TQTA 4JNEA 3VKHA 1SU7A 4B9QA 1Q5LA 1ZYLA 2OW6A 3FD9A 3HAHA 3EJQA 4FZSA 5FIGA 3ZEFA 2F1AA 4KIKB 3DX1A 3LLLA 4HYBA 3QNJA 3BUDA 3HAIA 3O3OB 1GNLA 3OHXM 2OBLA 2ZXQA 5C5BA 3OK8A 4UDYX 4IM0A 4H6HA 4PO2A 4EZSA 1YUWA 2YIVX 2PMRA 4EZXA 4EZTA 4ILGA 2EX3B 3UITA 1QWNA 4I43A 4JWCA 3BLBA 3ACOA 4EZQA 1R33A 4BNEA 5KBPA 4AZCB 1Y2OA 2EFKA 4JWDA 1PS3A 2LXYA 3BVXA 2YL8A 3EJSA 2F7QA 2FYVA 2RAJA
chains in the Genus database with same CATH topology
2OBMA 4JWEA 1E9VA 4R5KA 4E3CA 4EZWA 3VEBA 1E2UA 4JWIA 2OP6A 4EZPA 2YI8A 1GN9A 4FM3A 3OWGA 4ILIA 3SBTB 2GA9D 4WV7A 3DPQA 1OA1A 4JNEA 4D8JA 3VKHA 3ZEDA 2ND0A 1SU7A 5TKYA 4M0MA 4B9QA 4IM3A 4NPHA 4F01A 1Q5LA 1ZYLA 4UDXX 2PY6A 3T49A 1E1DA 5FLEX 3C7NA 3FD9A 1SUFA 1DG4A 4H6IA 3D2EA 1SU6A 2YIBA 3C7NB 2WINM 5FIGA 4EZUA 1BPRA 3ZEFA 2V7YA 3SBSA 4KIKA 4R5GA 3H0XA 2LM0A 4IWPA 5E84A 2Z8YA 4JLCA 3DOBA 3I01A 4KIKB 3DPPA 3ER9B 3KAWA 3ERCC 4R5LA 4HYBA 1GNTA 3QNJA 4WV5A 4EZNA 2KHOA 4EZVA 2QFFA 1OA0A 3LMFA 2ND1A 3O3MB 4E81A 1U00A 3O3OB 2YIAA 1GNLA 4EZOA 3OHXM 2YI9A 1UPXA 4IW0A 1DKZA 3D2FA 4G6QA 4JNFA 3B52X 2OBLA 3ER8C 1OAOA 4IWQA 1CKRA 3B51X 2X5CA 2RT6A 4HY9A 3GI7A 4UDYX 3RV0A 3O3NB 3VEAA 1JQKA 4IM0A 2N3KA 4HR1B 2QXLA 4H6HA 4PO2A 4EZSA 1YUWA 2YIVX 3T47A 3DQGA 3DPOA 4ILHB 2JNSA 1MJGA 4EZXA 4EZZA 4EZTA 4ILGA 2EX3B 4R5IA 4MQDA 3UITA 3RV1A 4I43A 3KAVA 4JWCA 1SU8A 2EWFA 1DKYA 2NCZA 4IM2A 4JN4A 7HSCA 3I04A 3QA8A 4EZQA 4FL9A 3L3OM 4R5JA 3N8EA 4JL9A 3T48A 1W9MA 4EZYA 3F7WA 4HR1A 3I39X 4IWOA 3B53X 2BPRA 4EZRA 4JWDA 3T46A 1DKXA 3A98A 2GAFD 3T4AG 4F00A 3KDRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C7N A;  3OHX M;  4JWE A;  4R5I A;  1DG4 A;  4H6I A;  1DKZ A;  3D2E A;  4R5K A;  3D2F A;  4JNF A;  4EZW A;  2WIN M;  4EZU A;  1BPR A;  4JWI A;  2OP6 A;  3C7N B;  4JWC A;  2V7Y A;  4EZP A;  1CKR A;  4JN4 A;  4R5G A;  1DKY A;  3H0X A;  5E84 A;  7HSC A;  3DOB A;  4EZQ A;  4HY9 A;  3DPP A;  4FL9 A;  3L3O M;  4R5J A;  4WV7 A;  3N8E A;  3T48 A;  3DPQ A;  4EZY A;  4JNE A;  4R5L A;  4HYB A;  3QNJ A;  2BPR A;  4WV5 A;  4EZN A;  4EZR A;  2KHO A;  4EZV A;  2QFF A;  4JWD A;  3T46 A;  1DKX A;  4H6H A;  2QXL A;  4E81 A;  4PO2 A;  4EZS A;  1U00 A;  5TKY A;  3T47 A;  1YUW A;  3DPO A;  4B9Q A;  3DQG A;  1Q5L A;  4F01 A;  3T4A G;  4EZX A;  4EZZ A;  4F00 A;  3T49 A;  4EZT A;  4EZO A; 
#chains in the Genus database with same CATH topology
 2OBM A;  3L3P A;  4JWE A;  1E2U A;  2ELB A;  2YKT A;  3D4Z A;  2GA9 D;  2OO2 A;  3SYV A;  4WV7 A;  1OA1 A;  3ZED A;  4AKV A;  4M0M A;  4ATM A;  2F7P A;  3C7N B;  2C08 A;  4R5G A;  3H0X A;  2Z8Y A;  3BUI A;  1HTY A;  3ERC C;  4R5L A;  1GNT A;  4EZN A;  4EZV A;  2QFF A;  1OA0 A;  2YL5 A;  1U00 A;  1TQV A;  2D1L A;  1X03 A;  3RPM A;  1HWW A;  3EJU A;  1I4D A;  3D2F A;  1OAO A;  2Q13 A;  3D50 A;  2X5C A;  3GI7 A;  3CKD A;  3O3N B;  3CZS A;  2N3K A;  3LVT A;  2RAK A;  3DPO A;  1MJG A;  4EZZ A;  2X3V A;  1WDZ A;  4R5I A;  2FIC A;  4FZO A;  3D52 A;  2EWF A;  1DKY A;  2NCZ A;  4AZI A;  3I04 A;  2Z0V A;  3CVR A;  4R5J A;  4HR1 A;  3I39 X;  3G9G A;  2WYI A;  3T46 A;  3BUP A;  3DDG A;  3CV5 A;  2RAI A;  3DX2 A;  4JWI A;  4AZ7 A;  4EZP A;  3DX3 A;  2YI8 A;  1GN9 A;  4FM3 A;  4DYL A;  4D8J A;  1TQS A;  2ND0 A;  2Q12 A;  2QKW A;  1I4L A;  5TKY A;  3BVU A;  4IM3 A;  4NPH A;  4UDX X;  3T49 A;  4AZG A;  3CAZ A;  2JNK A;  1DG4 A;  3D2E A;  1SU6 A;  4AZH A;  1HXK A;  2YIB A;  2WIN M;  1BPR A;  3SOG A;  4AZ5 A;  2V7Y A;  4KIK A;  2V0O A;  3QWE A;  2LM0 A;  4IWP A;  5E84 A;  3I01 A;  3DPP A;  3D51 A;  1R5E A;  4WV5 A;  2KHO A;  2X3X A;  3BUB A;  2ND1 A;  2WYH A;  4E81 A;  2Z0N A;  2O0I 1;  2YIA A;  3I2W A;  4EZO A;  2YI9 A;  4AZB A;  4IW0 A;  1DKZ A;  3BVW A;  4JNF A;  1QWU A;  3B52 X;  3ER8 C;  1CKR A;  4HY9 A;  4WPC A;  5C5B B;  2ALW A;  3VEA A;  3BVV A;  1JQK A;  4HR1 B;  3Q84 A;  3DDF A;  3DQG A;  3DX0 A;  1ZWW A;  4MQD A;  2YL6 A;  2GF4 A;  3RV1 A;  2YLA A;  2X3W A;  4IM2 A;  3QA8 A;  4AZC A;  3N8E A;  3T48 A;  3ABH A;  3B53 X;  1DKX A;  3DYT A;  4AZ6 A;  3T4A G;  2F7R A;  3KDR A;  3BVT A;  4E3C A;  3QE6 A;  1TQW A;  4H8S A;  3OWG A;  2F7O A;  1LQ7 A;  3DPQ A;  2OZN B;  3CZN A;  3QNI A;  4F01 A;  2Z0O A;  1O7D C;  2PY6 A;  1E1D A;  5FLE X;  3C7N A;  1SUF A;  3M3W A;  2YLL A;  4H6I A;  4NQI A;  4EZU A;  3PLT A;  3SBS A;  1X04 A;  4FZP A;  4JLC A;  3DOB A;  3ER9 B;  3KAW A;  3DX4 A;  4AVM A;  3LMF A;  1I49 A;  2D4C A;  3EJP A;  3O3M B;  3HAJ A;  2F18 A;  3EJR A;  1URU A;  1UPX A;  4G6Q A;  4IWQ A;  3B51 X;  2RT6 A;  3RV0 A;  2YL9 A;  4NSW A;  2QXL A;  4DCN C;  2MI7 A;  3T47 A;  4ILH B;  2JNS A;  3BUQ A;  2EFL A;  1R34 A;  3D4Y A;  4I1Q A;  3KAV A;  1SU8 A;  4JN4 A;  7HSC A;  1I4T A;  4FL9 A;  3L3O M;  1YWM A;  4JL9 A;  1W9M A;  4EZY A;  3F7W A;  4IWO A;  2BPR A;  4EZR A;  1O7D B;  3A98 A;  2GAF D;  2OW7 A;  3EJT A;  4F00 A;  1E9V A;  4R5K A;  4EZW A;  3VEB A;  2OP6 A;  2F1B A;  4WPE A;  4ILI A;  3SBT B;  3Q0K A;  1QX1 A;  1TQU A;  1TQT A;  4JNE A;  3VKH A;  1SU7 A;  4B9Q A;  1Q5L A;  1ZYL A;  2OW6 A;  3FD9 A;  3HAH A;  3EJQ A;  4FZS A;  5FIG A;  3ZEF A;  2F1A A;  4KIK B;  3DX1 A;  3LLL A;  4HYB A;  3QNJ A;  3BUD A;  3HAI A;  3O3O B;  1GNL A;  3OHX M;  2OBL A;  2ZXQ A;  5C5B A;  3OK8 A;  4UDY X;  4IM0 A;  4H6H A;  4PO2 A;  4EZS A;  1YUW A;  2YIV X;  2PMR A;  4EZX A;  4EZT A;  4ILG A;  2EX3 B;  3UIT A;  1QWN A;  4I43 A;  4JWC A;  3BLB A;  3ACO A;  4EZQ A;  1R33 A;  4BNE A;  5KBP A;  4AZC B;  1Y2O A;  2EFK A;  4JWD A;  1PS3 A;  2LXY A;  3BVX A;  2YL8 A;  3EJS A;  2F7Q A;  2FYV A;  2RAJ A; 
#chains in the Genus database with same CATH homology
 2OBM A;  4JWE A;  1E9V A;  4R5K A;  4E3C A;  4EZW A;  3VEB A;  1E2U A;  4JWI A;  2OP6 A;  4EZP A;  2YI8 A;  1GN9 A;  4FM3 A;  3OWG A;  4ILI A;  3SBT B;  2GA9 D;  4WV7 A;  3DPQ A;  1OA1 A;  4JNE A;  4D8J A;  3VKH A;  3ZED A;  2ND0 A;  1SU7 A;  5TKY A;  4M0M A;  4B9Q A;  4IM3 A;  4NPH A;  4F01 A;  1Q5L A;  1ZYL A;  4UDX X;  2PY6 A;  3T49 A;  1E1D A;  5FLE X;  3C7N A;  3FD9 A;  1SUF A;  1DG4 A;  4H6I A;  3D2E A;  1SU6 A;  2YIB A;  3C7N B;  2WIN M;  5FIG A;  4EZU A;  1BPR A;  3ZEF A;  2V7Y A;  3SBS A;  4KIK A;  4R5G A;  3H0X A;  2LM0 A;  4IWP A;  5E84 A;  2Z8Y A;  4JLC A;  3DOB A;  3I01 A;  4KIK B;  3DPP A;  3ER9 B;  3KAW A;  3ERC C;  4R5L A;  4HYB A;  1GNT A;  3QNJ A;  4WV5 A;  4EZN A;  2KHO A;  4EZV A;  2QFF A;  1OA0 A;  3LMF A;  2ND1 A;  3O3M B;  4E81 A;  1U00 A;  3O3O B;  2YIA A;  1GNL A;  4EZO A;  3OHX M;  2YI9 A;  1UPX A;  4IW0 A;  1DKZ A;  3D2F A;  4G6Q A;  4JNF A;  3B52 X;  2OBL A;  3ER8 C;  1OAO A;  4IWQ A;  1CKR A;  3B51 X;  2X5C A;  2RT6 A;  4HY9 A;  3GI7 A;  4UDY X;  3RV0 A;  3O3N B;  3VEA A;  1JQK A;  4IM0 A;  2N3K A;  4HR1 B;  2QXL A;  4H6H A;  4PO2 A;  4EZS A;  1YUW A;  2YIV X;  3T47 A;  3DQG A;  3DPO A;  4ILH B;  2JNS A;  1MJG A;  4EZX A;  4EZZ A;  4EZT A;  4ILG A;  2EX3 B;  4R5I A;  4MQD A;  3UIT A;  3RV1 A;  4I43 A;  3KAV A;  4JWC A;  1SU8 A;  2EWF A;  1DKY A;  2NCZ A;  4IM2 A;  4JN4 A;  7HSC A;  3I04 A;  3QA8 A;  4EZQ A;  4FL9 A;  3L3O M;  4R5J A;  3N8E A;  4JL9 A;  3T48 A;  1W9M A;  4EZY A;  3F7W A;  4HR1 A;  3I39 X;  4IWO A;  3B53 X;  2BPR A;  4EZR A;  4JWD A;  3T46 A;  1DKX A;  3A98 A;  2GAF D;  3T4A G;  4F00 A;  3KDR A; 
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