3RSM | Genus

Total Genus 155

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	155
sequence length	452
structure length	436
Chain Sequence	SIFRALTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGCNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 436 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Isomerase
source organism	Pseudomonas aeruginosa
publication title	Solution NMR of a 463-residue phosphohexomutase: domain 4 mobility, substates, and phosphoryl transfer defect. pubmed doi rcsb
molecule keywords	Phosphomannomutase/phosphoglucomutase
total genus	155
structure length	436
sequence length	452
ec nomenclature	ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date	2011-05-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00408	PGM_PMM_IV	Phosphoglucomutase/phosphomannomutase, C-terminal domain
A	PF02878	PGM_PMM_I	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A	PF02879	PGM_PMM_II	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A	PF02880	PGM_PMM_III	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	3rsmA04
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	3rsmA03
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	3rsmA01
3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	3rsmA02

4QG5A 1JDYA 3PMGA 5KL0A 1PCJX 2F7LA 1P5GX 2EIUA 4HJHA 2Z0FA 3NA5A 4WX8A 1C47A 1PCMX 1LXTA 2FKMX 2FUVA 1KFQA 3I3WA 3OLPA 2DKAA 1C4GA 3PDKA 4BJUA 5F9CA 5JMVD 2DKCA 4MRQA 1WQAA 5EPCA 5JN5A 2DKDA 3ENOC 2EHPA 4WXAA 4IL8A 1KFIA 3RSMA 3UW2A 5BMNA 1WJWA 3C04A 2H4LX 3BKQX 1K35A 2JPIA 1K2YX 2FKFA 2H5AX 1TUOA 3ENCA 5BMPA 1VKLA 5HSHA 1P5DX
chains in the Genus database with same CATH superfamily

2VJ0A 1RM1A 1EUVA 2FGTA 1YTBA 3F10A 1NVPA 3KTUA 1KYFA 3CWTA 1N3AA 1LXTA 2OOYA 1KFQA 3OLPA 1QN6A 5F9CA 4ROEB 5JMVD 1VTOA 2QRDA 1WQAA 2NOHA 3OSMA 2YA3A 1LWYA 2XHIA 4WZSD 3HS8A 1QNAA 1W80A 1WJWA 2NWVA 1UT7A 3OSEA 4RODB 4C7PA 5IYBP 1K35A 1K2YX 2NOEA 1TUOA 1V5SA 2MJ7A 2HL9A 3OSTA 1QNCA 1T6AA 2D0AA 1QNEA 3RPJA 1M3HA 5KL0A 1PCJX 2QRCA 3EIKA 3KRMA 1Q9UA 3H1ZA 3I0XA 1M5Q1 2Z0FA 5IYCP 1UL7A 4EAGA 3NA5A 2Y8QA 3T4NA 1QTPA 2EHBD 1KY7A 3ASMA 3OGDA 4DULA 2G30A 4BJUA 2DKAA 4B0AA 4TPSA 1QTSA 2D0CA 5EPCA 2HZSA 2QR1A 1YQRA 2QLVA 2R5XA 5JN5A 3TE5A 1YQMA 2HKPA 4D7QA 1TBAB 1QNBA 4IL8A 1KFIA 1QN5A 2O3OA 1XSZA 2Y8LA 3DPTA 1C9BB 1KO9A 3OH9A 1LWWA 2JPIA 3OC3C 2NOFA 1NGMA 5BMPA 1JFIC 1LWVA 4CFFA 1R4XA 1EBMA 1M3QA 1KYDA 4Q11A 2D0BA 1CDWA 1PCZA 2EIUA 1DIZA 3VN5A 1P5GX 1B9KA 1YQKA 1MP9A 2HZMA 2YH5A 1C47A 1PVSA 4WX8A 3OH6A 2FUVA 1QN4A 2Z8UA 4EJYA 2LAEA 3I3WA 2QREA 3PDKA 1C4GA 2JHJA 2IV8A 4EAIA 2I5WA 2NOLA 3HS9A 1N3CA 1P5DX 3OCIA 3IH7A 1VOLB 1J3MA 2DKCA 4MRQA 1QN3A 2ZFDB 2NOBA 1TBPA 1E42A 2DKDA 3ENOC 4WXAA 2JHNA 2V8QA 1QN8A 2V92A 4ROCB 5BMNA 3UW2A 1YQLA 1TGHA 4EJZA 1PZDA 2HL8A 3N89A 3C04A 5AN4A 2H4LX 4D7RA 4EAJA 1VOKA 4EALA 5IYDP 3SNSA 3CVTA 3CW7A 1VKLA 5HSHA 1N39A 1QN9A 3CWSA 4QG5A 2JOIA 1JDYA 1KYUA 2NVMA 3PMGA 2F7LA 1UT4A 1VTLE 4HJHA 1FN7A 1AISA 3D7QA 3DPUA 1PCMX 1D3UA 2FKMX 2NOIA 4I8OA 1MPGA 2PWWA 2OOXA 3TDHA 2NOZA 1KY6A 2V9JA 1QN7A 1YTFA 2IV9A 3ULXA 2NLVA 4EAKA 2EHPA 3CVSA 3I0WA 3F0ZA 3RSMA 3CWAA 1HU0A 4PY5A 3D4VA 3CWUA 3BKQX 2H5AX 2FKFA 3EAYA 3ENCA 1NH2A 2MZ8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4QG5 A;  1JDY A;  3PMG A;  5KL0 A;  1PCJ X;  2F7L A;  1P5G X;  2EIU A;  4HJH A;  2Z0F A;  3NA5 A;  4WX8 A;  1C47 A;  1PCM X;  1LXT A;  2FKM X;  2FUV A;  1KFQ A;  3I3W A;  3OLP A;  2DKA A;  1C4G A;  3PDK A;  4BJU A;  5F9C A;  5JMV D;  2DKC A;  4MRQ A;  1WQA A;  5EPC A;  5JN5 A;  2DKD A;  3ENO C;  2EHP A;  4WXA A;  4IL8 A;  1KFI A;  3RSM A;  3UW2 A;  5BMN A;  1WJW A;  3C04 A;  2H4L X;  3BKQ X;  1K35 A;  2JPI A;  1K2Y X;  2FKF A;  2H5A X;  1TUO A;  3ENC A;  5BMP A;  1VKL A;  5HSH A;  1P5D X; 
#chains in the Genus database with same CATH topology
 2VJ0 A;  1RM1 A;  1EUV A;  2FGT A;  1YTB A;  3F10 A;  1NVP A;  3KTU A;  1KYF A;  3CWT A;  1N3A A;  1LXT A;  2OOY A;  1KFQ A;  3OLP A;  1QN6 A;  5F9C A;  4ROE B;  5JMV D;  1VTO A;  2QRD A;  1WQA A;  2NOH A;  3OSM A;  2YA3 A;  1LWY A;  2XHI A;  4WZS D;  3HS8 A;  1QNA A;  1W80 A;  1WJW A;  2NWV A;  1UT7 A;  3OSE A;  4ROD B;  4C7P A;  5IYB P;  1K35 A;  1K2Y X;  2NOE A;  1TUO A;  1V5S A;  2MJ7 A;  2HL9 A;  3OST A;  1QNC A;  1T6A A;  2D0A A;  1QNE A;  3RPJ A;  1M3H A;  5KL0 A;  1PCJ X;  2QRC A;  3EIK A;  3KRM A;  1Q9U A;  3H1Z A;  3I0X A;  1M5Q 1;  2Z0F A;  5IYC P;  1UL7 A;  4EAG A;  3NA5 A;  2Y8Q A;  3T4N A;  1QTP A;  2EHB D;  1KY7 A;  3ASM A;  3OGD A;  4DUL A;  2G30 A;  4BJU A;  2DKA A;  4B0A A;  4TPS A;  1QTS A;  2D0C A;  5EPC A;  2HZS A;  2QR1 A;  1YQR A;  2QLV A;  2R5X A;  5JN5 A;  3TE5 A;  1YQM A;  2HKP A;  4D7Q A;  1TBA B;  1QNB A;  4IL8 A;  1KFI A;  1QN5 A;  2O3O A;  1XSZ A;  2Y8L A;  3DPT A;  1C9B B;  1KO9 A;  3OH9 A;  1LWW A;  2JPI A;  3OC3 C;  2NOF A;  1NGM A;  5BMP A;  1JFI C;  1LWV A;  4CFF A;  1R4X A;  1EBM A;  1M3Q A;  1KYD A;  4Q11 A;  2D0B A;  1CDW A;  1PCZ A;  2EIU A;  1DIZ A;  3VN5 A;  1P5G X;  1B9K A;  1YQK A;  1MP9 A;  2HZM A;  2YH5 A;  1C47 A;  1PVS A;  4WX8 A;  3OH6 A;  2FUV A;  1QN4 A;  2Z8U A;  4EJY A;  2LAE A;  3I3W A;  2QRE A;  3PDK A;  1C4G A;  2JHJ A;  2IV8 A;  4EAI A;  2I5W A;  2NOL A;  3HS9 A;  1N3C A;  1P5D X;  3OCI A;  3IH7 A;  1VOL B;  1J3M A;  2DKC A;  4MRQ A;  1QN3 A;  2ZFD B;  2NOB A;  1TBP A;  1E42 A;  2DKD A;  3ENO C;  4WXA A;  2JHN A;  2V8Q A;  1QN8 A;  2V92 A;  4ROC B;  5BMN A;  3UW2 A;  1YQL A;  1TGH A;  4EJZ A;  1PZD A;  2HL8 A;  3N89 A;  3C04 A;  5AN4 A;  2H4L X;  4D7R A;  4EAJ A;  1VOK A;  4EAL A;  5IYD P;  3SNS A;  3CVT A;  3CW7 A;  1VKL A;  5HSH A;  1N39 A;  1QN9 A;  3CWS A;  4QG5 A;  2JOI A;  1JDY A;  1KYU A;  2NVM A;  3PMG A;  2F7L A;  1UT4 A;  1VTL E;  4HJH A;  1FN7 A;  1AIS A;  3D7Q A;  3DPU A;  1PCM X;  1D3U A;  2FKM X;  2NOI A;  4I8O A;  1MPG A;  2PWW A;  2OOX A;  3TDH A;  2NOZ A;  1KY6 A;  2V9J A;  1QN7 A;  1YTF A;  2IV9 A;  3ULX A;  2NLV A;  4EAK A;  2EHP A;  3CVS A;  3I0W A;  3F0Z A;  3RSM A;  3CWA A;  1HU0 A;  4PY5 A;  3D4V A;  3CWU A;  3BKQ X;  2H5A X;  2FKF A;  3EAY A;  3ENC A;  1NH2 A;  2MZ8 A; 
#chains in the Genus database with same CATH homology
 4QG5 A;  1JDY A;  3PMG A;  5KL0 A;  1PCJ X;  2F7L A;  1P5G X;  2EIU A;  4HJH A;  2Z0F A;  3NA5 A;  4WX8 A;  1C47 A;  1PCM X;  1LXT A;  2FKM X;  2FUV A;  1KFQ A;  3I3W A;  3OLP A;  2DKA A;  1C4G A;  3PDK A;  4BJU A;  5F9C A;  5JMV D;  2DKC A;  4MRQ A;  1WQA A;  5EPC A;  5JN5 A;  2DKD A;  3ENO C;  2EHP A;  4WXA A;  4IL8 A;  1KFI A;  3RSM A;  3UW2 A;  5BMN A;  1WJW A;  3C04 A;  2H4L X;  3BKQ X;  1K35 A;  2JPI A;  1K2Y X;  2FKF A;  2H5A X;  1TUO A;  3ENC A;  5BMP A;  1VKL A;  5HSH A;  1P5D X;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3RSMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations