3UW2A

X-ray crystal structure of phosphoglucomutase/phosphomannomutase family protein (bth_i1489)from burkholderia thailandensis
Total Genus 159
50100150200250300350400450020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
464
structure length
458
Chain Sequence
MISQSIFKAYDIRGVIGKTLDADVARSIGRAFGSEVRAQGGDAVVVARDGRLSGPELVGALADGLRAAGVDVVDVGMVPTPVGYFAASVPLALSGGERRVDSCIVVTGSHNPPDYNGFKMVLRGAAIYGDQIQGLYKRIVDARFETGSGSYEQYDVADQYVERIVGDIKLTRPLKLVVDAGNGVAGPLATRLFKALGCELVELFTDIDGNFPNHHPDPAHPENLQDVIAKLKATDAEIGFAFDGDGDRLGVVTKDGQIIYPDRQLMLFAEEVLSRNPGAQIIYDVKCTRNLARWVREKGGEPLMWKTGHSLVKAKLRETGAPLAGEMSGHVFFKDRWYGFDDGLYTGARLLEILARVADPSALLNGLPNAVSTPELQLNVKLIDKLRADAKFDGADEVVTIDGLRVEYPDGFGLARSSNTTPVVVLRFEATSDAALARIQDDFRRALKAAKPGANLPF
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (4-6)AH4 (129-141)TI1 (8-11)S1 (12-15)TII1 (15-18)TIV1 (16-19)TIV2 (17-20)TI3 (112-115)AH1 (22-39)TIV3 (121-124)EMPTYS5 (98-99)S6 (103-106)AH2 (53-68)S7 (115-122)S3 (71-77)AH3 (80-87)TI6 (243-246)AH5 (156-166)S4 (90-91)TI2 (93-96)O1 (91-93)S9 (151-153)TII'1 (108-111)S8 (125-126)AH6 (185-196)TII3 (334-337)TIV4 (170-173)TVIII2 (357-360)S10 (175-179)TI'2 (180-183)TIV6 (211-214)S11 (199-203)TIV5 (202-205)TI4 (208-211)O2 (215-217)TI5 (217-220)AH7 (224-233)TI7 (253-256)AH11 (343-355)S13 (249-252)S14 (258-259)AH8 (261-275)AH12 (360-366)AH9 (289-298)TII2 (276-279)S16 (301-305)S15 (280-284)TI8 (284-287)TI9 (326-329)S20 (371-377)TVIII3 (406-409)S17 (323-326)S18 (330-333)S19 (340-341)S24 (430-436)TIV7 (424-427)AH13 (387-394)S21 (403-405)TII4 (398-401)TI10 (414-417)AH14 (439-456)S22 (410-414)TII5 (457-460)3H2 (221-223)S12 (238-242)O3 (396-398)S23 (417-423)S2 (43-48)AH10 (309-319)Updating...
connected with : NaN
molecule tags Isomerase
source organism Burkholderia thailandensis
publication title Combining functional and structural genomics to sample the essential Burkholderia structome.
pubmed doi rcsb
molecule keywords Phosphoglucomutase/phosphomannomutase family protein
total genus 159
structure length 458
sequence length 464
ec nomenclature
pdb deposition date 2011-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 3uw2A04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3uw2A03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3uw2A01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 3uw2A02
4QG5A 3ENOC 5EPCA 2DKDA 4HJHA 1WJWA 1P5DX 3ENCA 2FKFA 3PMGA 2H5AX 5HSHA 3RSMA 2F7LA 3BKQX 5BMPA 5BMNA 2DKAA 3I3WA 3UW2A 1PCJX 2Z0FA 1LXTA 1C47A 3NA5A 4IL8A 5JMVD 1WQAA 2FUVA 1TUOA 3C04A 4MRQA 5F9CA 2EIUA 2JPIA 3OLPA 4BJUA 2H4LX 2EHPA 1C4GA 1KFIA 4WXAA 1VKLA 4WX8A 3PDKA 1JDYA 1K35A 5JN5A 1K2YX 1KFQA 1P5GX 2DKCA 2FKMX 5KL0A 1PCMX
chains in the Genus database with same CATH superfamily
4EJZA 1NH2A 1KY7A 2OOXA 1PZDA 1KYUA 1WJWA 2ZFDB 3ENCA 2NOLA 2H5AX 1R4XA 2F7LA 5BMPA 1YQLA 1NVPA 4EAIA 2YH5A 2NOEA 1VOKA 1JFIC 1TUOA 3OSTA 1YQRA 2NOHA 2HZMA 4MRQA 3HS9A 4Q11A 2MJ7A 4DULA 2FGTA 2Y8QA 4C7PA 1QNCA 1PCZA 2JPIA 2Y8LA 3HS8A 3F0ZA 3KTUA 2H4LX 4WZSD 1C4GA 1FN7A 1NGMA 3OC3C 1N39A 1KO9A 1J3MA 1PVSA 4CFFA 2G30A 2Z8UA 1PCMX 3ENOC 5EPCA 2NOZA 3EAYA 3CWUA 3ASMA 1M5Q1 3SNSA 4D7RA 3OSMA 1DIZA 2QREA 1QN5A 1PCJX 1QTPA 2V9JA 2Z0FA 1LWVA 2R5XA 3NA5A 1TGHA 4PY5A 2QRDA 1CDWA 1EBMA 3ULXA 1QNEA 3CVSA 1TBAB 4ROCB 1QN7A 3KRMA 3OLPA 3DPUA 2LAEA 4BJUA 4I8OA 3TE5A 3I0WA 1QN6A 2I5WA 2D0AA 2D0CA 2PWWA 1M3HA 2EHPA 1W80A 4EAJA 1UL7A 1C9BB 2D0BA 2NOIA 3D4VA 1KFQA 2MZ8A 2DKCA 2FKMX 4EAKA 1QN9A 2HZSA 2NWVA 3F10A 1E42A 1RM1A 4D7QA 2DKDA 2JHNA 4HJHA 1P5DX 1QN3A 1QN8A 1LWYA 3VN5A 3RSMA 3DPTA 4B0AA 5IYDP 2DKAA 3UW2A 2QRCA 1D3UA 4TPSA 1C47A 3CWSA 5IYCP 2HL8A 4IL8A 5JMVD 1XSZA 3D7QA 2NOFA 1KYFA 3T4NA 1AISA 3I0XA 1YQMA 1TBPA 1QNBA 2JOIA 2XHIA 3N89A 3OSEA 3CWAA 1MP9A 2NOBA 3OH9A 4WXAA 1VKLA 4WX8A 1QN4A 1YQKA 2O3OA 2NVMA 1K35A 1QTSA 2V92A 1N3AA 1K2YX 2VJ0A 2JHJA 5KL0A 1UT7A 2YA3A 1KYDA 3PDKA 1MPGA 2QLVA 2NLVA 4QG5A 1YTFA 2IV9A 1VTLE 3OCIA 1VOLB 2V8QA 1HU0A 1VTOA 3CVTA 2FKFA 3PMGA 3TDHA 2HL9A 5HSHA 2HKPA 3OGDA 2OOYA 3BKQX 5BMNA 4EJYA 3I3WA 1T6AA 4EAGA 1KY6A 1LXTA 1V5SA 5AN4A 1N3CA 4RODB 1B9KA 2QR1A 3RPJA 1WQAA 2FUVA 3C04A 1QNAA 5F9CA 2EHBD 1Q9UA 2EIUA 3CW7A 3EIKA 1YTBA 4EALA 3CWTA 5IYBP 2IV8A 1KFIA 1UT4A 1LWWA 1EUVA 4ROEB 1JDYA 3IH7A 3H1ZA 5JN5A 3OH6A 1M3QA 1P5GX
chains in the Genus database with same CATH topology
4QG5A 3ENOC 5EPCA 2DKDA 4HJHA 1WJWA 1P5DX 3ENCA 2FKFA 3PMGA 2H5AX 5HSHA 3RSMA 2F7LA 3BKQX 5BMPA 5BMNA 2DKAA 3I3WA 3UW2A 1PCJX 2Z0FA 1LXTA 1C47A 3NA5A 4IL8A 5JMVD 1WQAA 2FUVA 1TUOA 3C04A 4MRQA 5F9CA 2EIUA 2JPIA 3OLPA 4BJUA 2H4LX 2EHPA 1C4GA 1KFIA 4WXAA 1VKLA 4WX8A 3PDKA 1JDYA 1K35A 5JN5A 1K2YX 1KFQA 1P5GX 2DKCA 2FKMX 5KL0A 1PCMX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QG5 A;  3ENO C;  5EPC A;  2DKD A;  4HJH A;  1WJW A;  1P5D X;  3ENC A;  2FKF A;  3PMG A;  2H5A X;  5HSH A;  3RSM A;  2F7L A;  3BKQ X;  5BMP A;  5BMN A;  2DKA A;  3I3W A;  3UW2 A;  1PCJ X;  2Z0F A;  1LXT A;  1C47 A;  3NA5 A;  4IL8 A;  5JMV D;  1WQA A;  2FUV A;  1TUO A;  3C04 A;  4MRQ A;  5F9C A;  2EIU A;  2JPI A;  3OLP A;  4BJU A;  2H4L X;  2EHP A;  1C4G A;  1KFI A;  4WXA A;  1VKL A;  4WX8 A;  3PDK A;  1JDY A;  1K35 A;  5JN5 A;  1K2Y X;  1KFQ A;  1P5G X;  2DKC A;  2FKM X;  5KL0 A;  1PCM X; 
#chains in the Genus database with same CATH topology
 4EJZ A;  1NH2 A;  1KY7 A;  2OOX A;  1PZD A;  1KYU A;  1WJW A;  2ZFD B;  3ENC A;  2NOL A;  2H5A X;  1R4X A;  2F7L A;  5BMP A;  1YQL A;  1NVP A;  4EAI A;  2YH5 A;  2NOE A;  1VOK A;  1JFI C;  1TUO A;  3OST A;  1YQR A;  2NOH A;  2HZM A;  4MRQ A;  3HS9 A;  4Q11 A;  2MJ7 A;  4DUL A;  2FGT A;  2Y8Q A;  4C7P A;  1QNC A;  1PCZ A;  2JPI A;  2Y8L A;  3HS8 A;  3F0Z A;  3KTU A;  2H4L X;  4WZS D;  1C4G A;  1FN7 A;  1NGM A;  3OC3 C;  1N39 A;  1KO9 A;  1J3M A;  1PVS A;  4CFF A;  2G30 A;  2Z8U A;  1PCM X;  3ENO C;  5EPC A;  2NOZ A;  3EAY A;  3CWU A;  3ASM A;  1M5Q 1;  3SNS A;  4D7R A;  3OSM A;  1DIZ A;  2QRE A;  1QN5 A;  1PCJ X;  1QTP A;  2V9J A;  2Z0F A;  1LWV A;  2R5X A;  3NA5 A;  1TGH A;  4PY5 A;  2QRD A;  1CDW A;  1EBM A;  3ULX A;  1QNE A;  3CVS A;  1TBA B;  4ROC B;  1QN7 A;  3KRM A;  3OLP A;  3DPU A;  2LAE A;  4BJU A;  4I8O A;  3TE5 A;  3I0W A;  1QN6 A;  2I5W A;  2D0A A;  2D0C A;  2PWW A;  1M3H A;  2EHP A;  1W80 A;  4EAJ A;  1UL7 A;  1C9B B;  2D0B A;  2NOI A;  3D4V A;  1KFQ A;  2MZ8 A;  2DKC A;  2FKM X;  4EAK A;  1QN9 A;  2HZS A;  2NWV A;  3F10 A;  1E42 A;  1RM1 A;  4D7Q A;  2DKD A;  2JHN A;  4HJH A;  1P5D X;  1QN3 A;  1QN8 A;  1LWY A;  3VN5 A;  3RSM A;  3DPT A;  4B0A A;  5IYD P;  2DKA A;  3UW2 A;  2QRC A;  1D3U A;  4TPS A;  1C47 A;  3CWS A;  5IYC P;  2HL8 A;  4IL8 A;  5JMV D;  1XSZ A;  3D7Q A;  2NOF A;  1KYF A;  3T4N A;  1AIS A;  3I0X A;  1YQM A;  1TBP A;  1QNB A;  2JOI A;  2XHI A;  3N89 A;  3OSE A;  3CWA A;  1MP9 A;  2NOB A;  3OH9 A;  4WXA A;  1VKL A;  4WX8 A;  1QN4 A;  1YQK A;  2O3O A;  2NVM A;  1K35 A;  1QTS A;  2V92 A;  1N3A A;  1K2Y X;  2VJ0 A;  2JHJ A;  5KL0 A;  1UT7 A;  2YA3 A;  1KYD A;  3PDK A;  1MPG A;  2QLV A;  2NLV A;  4QG5 A;  1YTF A;  2IV9 A;  1VTL E;  3OCI A;  1VOL B;  2V8Q A;  1HU0 A;  1VTO A;  3CVT A;  2FKF A;  3PMG A;  3TDH A;  2HL9 A;  5HSH A;  2HKP A;  3OGD A;  2OOY A;  3BKQ X;  5BMN A;  4EJY A;  3I3W A;  1T6A A;  4EAG A;  1KY6 A;  1LXT A;  1V5S A;  5AN4 A;  1N3C A;  4ROD B;  1B9K A;  2QR1 A;  3RPJ A;  1WQA A;  2FUV A;  3C04 A;  1QNA A;  5F9C A;  2EHB D;  1Q9U A;  2EIU A;  3CW7 A;  3EIK A;  1YTB A;  4EAL A;  3CWT A;  5IYB P;  2IV8 A;  1KFI A;  1UT4 A;  1LWW A;  1EUV A;  4ROE B;  1JDY A;  3IH7 A;  3H1Z A;  5JN5 A;  3OH6 A;  1M3Q A;  1P5G X; 
#chains in the Genus database with same CATH homology
 4QG5 A;  3ENO C;  5EPC A;  2DKD A;  4HJH A;  1WJW A;  1P5D X;  3ENC A;  2FKF A;  3PMG A;  2H5A X;  5HSH A;  3RSM A;  2F7L A;  3BKQ X;  5BMP A;  5BMN A;  2DKA A;  3I3W A;  3UW2 A;  1PCJ X;  2Z0F A;  1LXT A;  1C47 A;  3NA5 A;  4IL8 A;  5JMV D;  1WQA A;  2FUV A;  1TUO A;  3C04 A;  4MRQ A;  5F9C A;  2EIU A;  2JPI A;  3OLP A;  4BJU A;  2H4L X;  2EHP A;  1C4G A;  1KFI A;  4WXA A;  1VKL A;  4WX8 A;  3PDK A;  1JDY A;  1K35 A;  5JN5 A;  1K2Y X;  1KFQ A;  1P5G X;  2DKC A;  2FKM X;  5KL0 A;  1PCM X; 
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similar chains in the pdb database (?% sequence similarity)

 
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