4EZSA

Crystal structure of the substrate binding domain of e.coli dnak in complex with metchnikowin (residues 20 to 26)
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
218
structure length
218
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural studies of DnaK in complex with proline rich antimicrobial peptides reveal two different peptide binding modes
rcsb
molecule tags Chaperone/peptide binding protein
source organism Escherichia coli
molecule keywords Chaperone protein DnaK
total genus 65
structure length 218
sequence length 218
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4ezsA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4ezsA01
4F01A 4B9QA 3DPQA 4HYBA 4R5JA 4EZTA 2BPRA 4EZQA 3T46A 1YUWA 1U00A 4EZZA 4PO2A 1CKRA 4JN4A 1DKXA 5TKYA 3C7NB 3T4AG 4EZNA 4EZOA 3T48A 3D2EA 3T47A 4F00A 4R5GA 1Q5LA 4H6IA 4EZYA 3D2FA 4JWIA 4E81A 4HY9A 4EZXA 5E84A 3DQGA 4WV5A 3OHXM 4EZVA 4R5LA 2OP6A 2KHOA 3C7NA 3QNJA 4JNFA 4JNEA 4R5KA 4EZUA 3DPPA 4EZWA 4FL9A 1DG4A 4EZRA 4R5IA 2V7YA 2QFFA 4JWCA 1BPRA 1DKZA 3DOBA 3DPOA 3N8EA 4WV7A 4EZSA 3H0XA 1DKYA 2QXLA 2WINM 4H6HA 4JWDA 4JWEA 3L3OM 3T49A 7HSCA 4EZPA
chains in the Genus database with same CATH superfamily
3ZEDA 2JNSA 4M0MA 3EJQA 5FIGA 1Q5LA 1MJGA 3DQGA 3OHXM 1E2UA 3LVTA 2EFKA 3DDFA 3QWEA 4AZGA 2Z0OA 3H0XA 4NPHA 1R34A 2ND0A 1GNLA 4ILHB 2YL8A 2EFLA 4WPCA 1WDZA 4JL9A 1TQWA 3RPMA 4DCNC 4DYLA 3ACOA 3BVUA 3ABHA 2F7QA 1I49A 2JNKA 3QNJA 1HTYA 4EZWA 3VKHA 2YI9A 4EZSA 4AVMA 4HYBA 1X04A 2BPRA 4EZZA 3Q0KA 2GAFD 4F00A 4H8SA 4AZBA 2QKWA 4JWIA 2F18A 3SOGA 2GA9D 1ZWWA 2KHOA 3VEAA 4ILIA 4EZRA 2X3XA 1QWUA 2O0I1 4JWDA 2RT6A 1UPXA 4EZTA 3BVVA 2OZNB 2Q12A 2GF4A 3DX4A 3RV1A 4HY9A 4I1QA 3KDRA 4JNFA 3ER9B 1TQVA 3RV0A 4D8JA 1DKZA 2OO2A 5C5BB 4IWOA 2YIVX 1E1DA 4E81A 2LXYA 2F7OA 4R5LA 4IW0A 1SU7A 1BPRA 1YWMA 4IM2A 2QXLA 3BUBA 7HSCA 3VEBA 3BVWA 2RAJA 2RAKA 3L3PA 4R5GA 2ALWA 1TQTA 4EZXA 3BUPA 2WYIA 1GNTA 3DX2A 1PS3A 2X3WA 3EJUA 4HR1A 3QE6A 3I39X 4WV7A 4H6HA 4B9QA 4NQIA 2OW7A 4MQDA 1LQ7A 3T48A 2ZXQA 4FZSA 2F1AA 4EZYA 1O7DC 2NCZA 3CVRA 1Y2OA 3ER8C 3EJPA 2YLAA 4IM0A 2X5CA 2QFFA 3DOBA 1TQUA 3M3WA 3O3MB 2WINM 1X03A 2OW6A 3CV5A 1SUFA 5FLEX 4EZQA 3EJTA 3O3OB 3I2WA 1QWNA 3PLTA 1JQKA 3UITA 1SU8A 3BVXA 3ERCC 3CKDA 4NSWA 4AZHA 1QX1A 4BNEA 3DPOA 3F7WA 2FYVA 3OK8A 3T46A 4KIKB 4PO2A 4UDYX 3C7NB 2YIAA 4WV5A 2WYHA 4AKVA 2Z8YA 2OBMA 3HAJA 4JWCA 3DPQA 2PY6A 2OBLA 1OA0A 5TKYA 4AZ5A 3SYVA 1I4TA 3KAWA 3SBSA 4AZCA 4EZVA 1I4LA 1R33A 3I01A 4G6QA 3LLLA 4UDXX 3BUDA 1SU6A 2YL9A 4IWQA 3DX0A 4IM3A 4R5JA 1YUWA 1CKRA 3BVTA 1W9MA 4I43A 3O3NB 2LM0A 4ILGA 1E9VA 4FM3A 3BUQA 1HXKA 1OAOA 3KAVA 2F1BA 4JWEA 3T49A 3BUIA 3D50A 3QA8A 1U00A 4FZOA 3D51A 5C5BA 3GI7A 3DX3A 5E84A 3HAHA 4E3CA 1GN9A 2N3KA 1URUA 3D52A 1DG4A 4R5KA 3ZEFA 4R5IA 4AZ6A 3L3OM 4F01A 2YI8A 4JN4A 1DKXA 4EZOA 3G9GA 3SBTB 3BLBA 2D1LA 3D2FA 3OWGA 2PMRA 4FL9A 4ATMA 2YKTA 3FD9A 2RAIA 4AZCB 2D4CA 4AZ7A 2C08A 3QNIA 2ELBA 3CZSA 1R5EA 2YLLA 3EJRA 4FZPA 1HWWA 5KBPA 2F7RA 2MI7A 4JNEA 3DPPA 2V0OA 3DYTA 2FICA 2EWFA 2Z0VA 3B53X 4HR1B 4JLCA 3B52X 3D2EA 3DDGA 3T47A 3D4ZA 4H6IA 3HAIA 2OP6A 3A98A 2YL5A 4EZUA 1I4DA 1TQSA 4IWPA 2V7YA 3N8EA 3CZNA 3Q84A 3I04A 2Q13A 2X3VA 2YL6A 4EZPA 1ZYLA 2F7PA 4AZIA 1OA1A 3CAZA 2Z0NA 3T4AG 4EZNA 3D4YA 2YIBA 3EJSA 2ND1A 4KIKA 3LMFA 1O7DB 3C7NA 3DX1A 2EX3B 1DKYA 3B51X 4WPEA
chains in the Genus database with same CATH topology
4F01A 2YI8A 3ZEDA 2JNSA 4M0MA 4IWOA 3T46A 4KIKB 4PO2A 2YIVX 4JN4A 1DKXA 5FIGA 4UDYX 3C7NB 4EZOA 1Q5LA 3SBTB 1MJGA 2YIAA 1E1DA 3D2FA 4E81A 3DQGA 4WV5A 3OHXM 4R5LA 1E2UA 3OWGA 4IW0A 4FL9A 2Z8YA 2OBMA 1SU7A 4JWCA 1BPRA 4IM2A 3H0XA 4NPHA 3FD9A 2QXLA 7HSCA 2ND0A 1GNLA 3VEBA 4ILHB 3DPQA 2PY6A 2OBLA 1OA0A 4JL9A 5TKYA 4R5GA 3KAWA 4EZXA 3SBSA 1GNTA 4EZVA 4HR1A 3QNJA 4JNEA 4EZWA 3DPPA 3I01A 4G6QA 3VKHA 2YI9A 4UDXX 3I39X 4WV7A 4EZSA 4H6HA 2EWFA 1SU6A 4B9QA 4HYBA 4IWQA 4IM3A 4R5JA 2BPRA 1YUWA 4EZZA 4MQDA 1CKRA 3B53X 4HR1B 4JLCA 1W9MA 2GAFD 3B52X 3D2EA 3T47A 3T48A 4F00A 4I43A 4H6IA 4EZYA 3O3NB 4JWIA 2NCZA 2LM0A 4ILGA 2GA9D 1E9VA 3ER8C 4FM3A 1OAOA 2OP6A 2KHOA 3A98A 4IM0A 3KAVA 4EZUA 2X5CA 3VEAA 4ILIA 4IWPA 4EZRA 2V7YA 2QFFA 3DOBA 3N8EA 3O3MB 4JWDA 2WINM 3I04A 4JWEA 3T49A 1SUFA 4EZPA 2RT6A 1UPXA 5FLEX 3QA8A 1ZYLA 4EZTA 4EZQA 3O3OB 1U00A 1OA1A 3T4AG 4EZNA 3GI7A 3RV1A 1JQKA 4HY9A 2YIBA 5E84A 2ND1A 4KIKA 3UITA 1SU8A 4E3CA 1GN9A 2N3KA 3KDRA 3LMFA 3C7NA 4JNFA 1DG4A 4R5KA 3ERCC 3ER9B 3ZEFA 4R5IA 3RV0A 2EX3B 4D8JA 1DKZA 3DPOA 1DKYA 3B51X 3F7WA 3L3OM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F01 A;  4B9Q A;  3DPQ A;  4HYB A;  4R5J A;  4EZT A;  2BPR A;  4EZQ A;  3T46 A;  1YUW A;  1U00 A;  4EZZ A;  4PO2 A;  1CKR A;  4JN4 A;  1DKX A;  5TKY A;  3C7N B;  3T4A G;  4EZN A;  4EZO A;  3T48 A;  3D2E A;  3T47 A;  4F00 A;  4R5G A;  1Q5L A;  4H6I A;  4EZY A;  3D2F A;  4JWI A;  4E81 A;  4HY9 A;  4EZX A;  5E84 A;  3DQG A;  4WV5 A;  3OHX M;  4EZV A;  4R5L A;  2OP6 A;  2KHO A;  3C7N A;  3QNJ A;  4JNF A;  4JNE A;  4R5K A;  4EZU A;  3DPP A;  4EZW A;  4FL9 A;  1DG4 A;  4EZR A;  4R5I A;  2V7Y A;  2QFF A;  4JWC A;  1BPR A;  1DKZ A;  3DOB A;  3DPO A;  3N8E A;  4WV7 A;  4EZS A;  3H0X A;  1DKY A;  2QXL A;  2WIN M;  4H6H A;  4JWD A;  4JWE A;  3L3O M;  3T49 A;  7HSC A;  4EZP A; 
#chains in the Genus database with same CATH topology
 3ZED A;  2JNS A;  4M0M A;  3EJQ A;  5FIG A;  1Q5L A;  1MJG A;  3DQG A;  3OHX M;  1E2U A;  3LVT A;  2EFK A;  3DDF A;  3QWE A;  4AZG A;  2Z0O A;  3H0X A;  4NPH A;  1R34 A;  2ND0 A;  1GNL A;  4ILH B;  2YL8 A;  2EFL A;  4WPC A;  1WDZ A;  4JL9 A;  1TQW A;  3RPM A;  4DCN C;  4DYL A;  3ACO A;  3BVU A;  3ABH A;  2F7Q A;  1I49 A;  2JNK A;  3QNJ A;  1HTY A;  4EZW A;  3VKH A;  2YI9 A;  4EZS A;  4AVM A;  4HYB A;  1X04 A;  2BPR A;  4EZZ A;  3Q0K A;  2GAF D;  4F00 A;  4H8S A;  4AZB A;  2QKW A;  4JWI A;  2F18 A;  3SOG A;  2GA9 D;  1ZWW A;  2KHO A;  3VEA A;  4ILI A;  4EZR A;  2X3X A;  1QWU A;  2O0I 1;  4JWD A;  2RT6 A;  1UPX A;  4EZT A;  3BVV A;  2OZN B;  2Q12 A;  2GF4 A;  3DX4 A;  3RV1 A;  4HY9 A;  4I1Q A;  3KDR A;  4JNF A;  3ER9 B;  1TQV A;  3RV0 A;  4D8J A;  1DKZ A;  2OO2 A;  5C5B B;  4IWO A;  2YIV X;  1E1D A;  4E81 A;  2LXY A;  2F7O A;  4R5L A;  4IW0 A;  1SU7 A;  1BPR A;  1YWM A;  4IM2 A;  2QXL A;  3BUB A;  7HSC A;  3VEB A;  3BVW A;  2RAJ A;  2RAK A;  3L3P A;  4R5G A;  2ALW A;  1TQT A;  4EZX A;  3BUP A;  2WYI A;  1GNT A;  3DX2 A;  1PS3 A;  2X3W A;  3EJU A;  4HR1 A;  3QE6 A;  3I39 X;  4WV7 A;  4H6H A;  4B9Q A;  4NQI A;  2OW7 A;  4MQD A;  1LQ7 A;  3T48 A;  2ZXQ A;  4FZS A;  2F1A A;  4EZY A;  1O7D C;  2NCZ A;  3CVR A;  1Y2O A;  3ER8 C;  3EJP A;  2YLA A;  4IM0 A;  2X5C A;  2QFF A;  3DOB A;  1TQU A;  3M3W A;  3O3M B;  2WIN M;  1X03 A;  2OW6 A;  3CV5 A;  1SUF A;  5FLE X;  4EZQ A;  3EJT A;  3O3O B;  3I2W A;  1QWN A;  3PLT A;  1JQK A;  3UIT A;  1SU8 A;  3BVX A;  3ERC C;  3CKD A;  4NSW A;  4AZH A;  1QX1 A;  4BNE A;  3DPO A;  3F7W A;  2FYV A;  3OK8 A;  3T46 A;  4KIK B;  4PO2 A;  4UDY X;  3C7N B;  2YIA A;  4WV5 A;  2WYH A;  4AKV A;  2Z8Y A;  2OBM A;  3HAJ A;  4JWC A;  3DPQ A;  2PY6 A;  2OBL A;  1OA0 A;  5TKY A;  4AZ5 A;  3SYV A;  1I4T A;  3KAW A;  3SBS A;  4AZC A;  4EZV A;  1I4L A;  1R33 A;  3I01 A;  4G6Q A;  3LLL A;  4UDX X;  3BUD A;  1SU6 A;  2YL9 A;  4IWQ A;  3DX0 A;  4IM3 A;  4R5J A;  1YUW A;  1CKR A;  3BVT A;  1W9M A;  4I43 A;  3O3N B;  2LM0 A;  4ILG A;  1E9V A;  4FM3 A;  3BUQ A;  1HXK A;  1OAO A;  3KAV A;  2F1B A;  4JWE A;  3T49 A;  3BUI A;  3D50 A;  3QA8 A;  1U00 A;  4FZO A;  3D51 A;  5C5B A;  3GI7 A;  3DX3 A;  5E84 A;  3HAH A;  4E3C A;  1GN9 A;  2N3K A;  1URU A;  3D52 A;  1DG4 A;  4R5K A;  3ZEF A;  4R5I A;  4AZ6 A;  3L3O M;  4F01 A;  2YI8 A;  4JN4 A;  1DKX A;  4EZO A;  3G9G A;  3SBT B;  3BLB A;  2D1L A;  3D2F A;  3OWG A;  2PMR A;  4FL9 A;  4ATM A;  2YKT A;  3FD9 A;  2RAI A;  4AZC B;  2D4C A;  4AZ7 A;  2C08 A;  3QNI A;  2ELB A;  3CZS A;  1R5E A;  2YLL A;  3EJR A;  4FZP A;  1HWW A;  5KBP A;  2F7R A;  2MI7 A;  4JNE A;  3DPP A;  2V0O A;  3DYT A;  2FIC A;  2EWF A;  2Z0V A;  3B53 X;  4HR1 B;  4JLC A;  3B52 X;  3D2E A;  3DDG A;  3T47 A;  3D4Z A;  4H6I A;  3HAI A;  2OP6 A;  3A98 A;  2YL5 A;  4EZU A;  1I4D A;  1TQS A;  4IWP A;  2V7Y A;  3N8E A;  3CZN A;  3Q84 A;  3I04 A;  2Q13 A;  2X3V A;  2YL6 A;  4EZP A;  1ZYL A;  2F7P A;  4AZI A;  1OA1 A;  3CAZ A;  2Z0N A;  3T4A G;  4EZN A;  3D4Y A;  2YIB A;  3EJS A;  2ND1 A;  4KIK A;  3LMF A;  1O7D B;  3C7N A;  3DX1 A;  2EX3 B;  1DKY A;  3B51 X;  4WPE A; 
#chains in the Genus database with same CATH homology
 4F01 A;  2YI8 A;  3ZED A;  2JNS A;  4M0M A;  4IWO A;  3T46 A;  4KIK B;  4PO2 A;  2YIV X;  4JN4 A;  1DKX A;  5FIG A;  4UDY X;  3C7N B;  4EZO A;  1Q5L A;  3SBT B;  1MJG A;  2YIA A;  1E1D A;  3D2F A;  4E81 A;  3DQG A;  4WV5 A;  3OHX M;  4R5L A;  1E2U A;  3OWG A;  4IW0 A;  4FL9 A;  2Z8Y A;  2OBM A;  1SU7 A;  4JWC A;  1BPR A;  4IM2 A;  3H0X A;  4NPH A;  3FD9 A;  2QXL A;  7HSC A;  2ND0 A;  1GNL A;  3VEB A;  4ILH B;  3DPQ A;  2PY6 A;  2OBL A;  1OA0 A;  4JL9 A;  5TKY A;  4R5G A;  3KAW A;  4EZX A;  3SBS A;  1GNT A;  4EZV A;  4HR1 A;  3QNJ A;  4JNE A;  4EZW A;  3DPP A;  3I01 A;  4G6Q A;  3VKH A;  2YI9 A;  4UDX X;  3I39 X;  4WV7 A;  4EZS A;  4H6H A;  2EWF A;  1SU6 A;  4B9Q A;  4HYB A;  4IWQ A;  4IM3 A;  4R5J A;  2BPR A;  1YUW A;  4EZZ A;  4MQD A;  1CKR A;  3B53 X;  4HR1 B;  4JLC A;  1W9M A;  2GAF D;  3B52 X;  3D2E A;  3T47 A;  3T48 A;  4F00 A;  4I43 A;  4H6I A;  4EZY A;  3O3N B;  4JWI A;  2NCZ A;  2LM0 A;  4ILG A;  2GA9 D;  1E9V A;  3ER8 C;  4FM3 A;  1OAO A;  2OP6 A;  2KHO A;  3A98 A;  4IM0 A;  3KAV A;  4EZU A;  2X5C A;  3VEA A;  4ILI A;  4IWP A;  4EZR A;  2V7Y A;  2QFF A;  3DOB A;  3N8E A;  3O3M B;  4JWD A;  2WIN M;  3I04 A;  4JWE A;  3T49 A;  1SUF A;  4EZP A;  2RT6 A;  1UPX A;  5FLE X;  3QA8 A;  1ZYL A;  4EZT A;  4EZQ A;  3O3O B;  1U00 A;  1OA1 A;  3T4A G;  4EZN A;  3GI7 A;  3RV1 A;  1JQK A;  4HY9 A;  2YIB A;  5E84 A;  2ND1 A;  4KIK A;  3UIT A;  1SU8 A;  4E3C A;  1GN9 A;  2N3K A;  3KDR A;  3LMF A;  3C7N A;  4JNF A;  1DG4 A;  4R5K A;  3ERC C;  3ER9 B;  3ZEF A;  4R5I A;  3RV0 A;  2EX3 B;  4D8J A;  1DKZ A;  3DPO A;  1DKY A;  3B51 X;  3F7W A;  3L3O M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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