4EZVA

Crystal structure of the substrate binding domain of e.coli dnak in complex with pr-bombesin in space group p21212
Total Genus 65

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
219
structure length
219
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/peptide binding protein
source organism Escherichia coli
publication title Structural studies of DnaK in complex with proline rich antimicrobial peptides reveal two different peptide binding modes
rcsb
molecule keywords Chaperone protein DnaK
total genus 65
structure length 219
sequence length 219
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4ezvA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4ezvA01
4HYBA 3DPPA 2KHOA 1DKYA 1DKZA 4JWCA 4WV5A 3OHXM 4R5LA 4H6HA 2WINM 3T48A 2V7YA 4WV7A 2BPRA 4F00A 3DPOA 4E81A 4EZSA 1Q5LA 3C7NB 4EZUA 1BPRA 1CKRA 3T4AG 4EZNA 1DG4A 4HY9A 2QFFA 4EZQA 1U00A 3N8EA 4JWIA 4H6IA 4JN4A 3QNJA 3C7NA 4EZYA 3L3OM 4R5GA 3DQGA 1DKXA 2OP6A 4EZTA 4EZZA 7HSCA 5TKYA 4EZPA 3T47A 4EZVA 4R5JA 4FL9A 4EZOA 3T49A 4R5KA 3T46A 3D2FA 4EZXA 4PO2A 4EZRA 4B9QA 5E84A 4EZWA 2QXLA 3H0XA 4F01A 4JNEA 3DOBA 4JNFA 4R5IA 1YUWA 4JWDA 3DPQA 3D2EA 4JWEA
chains in the Genus database with same CATH superfamily
1OA1A 3D4ZA 1Q5LA 4AVMA 3Q84A 1DKXA 3BVTA 2ND0A 3ER9B 2JNKA 3DDGA 3RV0A 4PO2A 2QXLA 3B52X 2OZNB 1I4TA 2ND1A 1ZWWA 1SU6A 1PS3A 4WV5A 3RV1A 2C08A 4HY9A 3BVUA 3N8EA 4AZCB 3C7NA 4M0MA 4E3CA 4FZOA 2ZXQA 1I4LA 3T49A 3T46A 4IM0A 4F01A 1YUWA 4JWDA 3DOBA 4FZSA 4H8SA 3LLLA 4HYBA 2GF4A 4ILHB 1WDZA 2PMRA 3D4YA 3O3NB 1URUA 2PY6A 4AZ7A 4EZQA 2YI9A 2X5CA 3CV5A 2YI8A 3BLBA 4AZCA 3I01A 1OAOA 2F7OA 2LXYA 4MQDA 3H0XA 3OK8A 1QWNA 4IWQA 1I49A 1E2UA 2OBMA 3ACOA 3BUDA 4UDYX 1E1DA 4JNEA 4JNFA 3DX4A 1GN9A 3EJTA 3DPPA 4H6HA 2O0I1 3CKDA 1CKRA 3T4AG 1I4DA 1TQSA 4HR1A 2YKTA 2OBLA 3DDFA 1GNTA 2QKWA 2GAFD 2F7PA 3D2FA 2OW7A 2YL9A 3CZSA 4IM3A 3G9GA 4WV7A 4NQIA 3VEAA 4EZUA 3C7NB 1U00A 4JN4A 3D51A 3L3OM 2YLLA 3B51X 1OA0A 3BUQA 4EZVA 2RT6A 3SBSA 3I04A 3EJUA 2KHOA 1TQWA 3CAZA 3DYTA 2V0OA 1TQUA 3DX0A 4E81A 4EZSA 3A98A 3O3OB 3KAVA 3QNJA 4AZIA 2EX3B 4AZBA 3QA8A 4BNEA 3EJSA 2FYVA 3L3PA 1GNLA 2OO2A 4JWEA 2F18A 1HTYA 2ELBA 2EFLA 4IWOA 1W9MA 1DKYA 3OHXM 2F7QA 1SUFA 2YL5A 3DX2A 1R5EA 2QFFA 2Q12A 2RAJA 3D52A 4R5JA 3HAJA 3BUBA 1HWWA 3VKHA 3KAWA 4KIKA 4NSWA 2D1LA 4R5LA 2WYIA 4HR1B 3F7WA 4NPHA 4H6IA 4R5GA 2OP6A 4I43A 1LQ7A 3KDRA 2NCZA 3QWEA 3O3MB 3CZNA 2MI7A 3D2EA 3BUIA 3B53X 1O7DC 2X3XA 3DPOA 1X04A 2WYHA 2F1BA 1BPRA 2YIAA 4IWPA 3UITA 2OW6A 4EZZA 3QNIA 4AZ6A 3PLTA 1Y2OA 1SU7A 3QE6A 3T47A 3D50A 3EJQA 4WPEA 4EZRA 5E84A 1MJGA 4FZPA 4ILIA 3HAHA 2D4CA 4I1QA 2Z0VA 4JWCA 3ZEDA 3LMFA 3M3WA 4IW0A 1TQTA 2YLAA 3LVTA 3Q0KA 3BUPA 3I39X 1ZYLA 2Z8YA 3VEBA 3DPQA 3BVVA 5C5BA 2RAIA 4AZGA 1UPXA 5FLEX 2ALWA 2X3WA 2N3KA 3DX1A 2Q13A 2F7RA 4FM3A 1DG4A 2JNSA 1TQVA 4DCNC 4EZTA 2YIVX 2Z0NA 5TKYA 4D8JA 3EJRA 2EWFA 4EZXA 1HXKA 1R33A 4AKVA 3SYVA 3ER8C 3HAIA 2WINM 4KIKB 4DYLA 4JL9A 1QWUA 3CVRA 2F1AA 3ABHA 3EJPA 3DQGA 3BVXA 2RAKA 4G6QA 4ATMA 4EZPA 3T48A 3OWGA 5KBPA 4AZ5A 2X3VA 3DX3A 5FIGA 3I2WA 2V7YA 2GA9D 2YIBA 4AZHA 4F00A 1O7DB 2LM0A 4JWIA 3ERCC 4ILGA 1JQKA 2Z0OA 4FL9A 4R5KA 4B9QA 4EZWA 1R34A 1X03A 2YL8A 3SBTB 4IM2A 3GI7A 2FICA 2EFKA 4JLCA 2YL6A 2BPRA 4WPCA 4EZNA 1YWMA 3FD9A 3RPMA 4EZOA 3SOGA 5C5BB 1DKZA 1E9VA 1SU8A 3ZEFA 4EZYA 7HSCA 1QX1A 4UDXX 4R5IA 3BVWA
chains in the Genus database with same CATH topology
4KIKB 1GN9A 4JL9A 3DPPA 3KAWA 1OA1A 4KIKA 4R5LA 4H6HA 4HR1B 1Q5LA 1CKRA 3T4AG 3F7WA 4NPHA 4H6IA 4HR1A 3DQGA 4R5GA 1DKXA 2OP6A 2ND0A 3ER9B 4I43A 2OBLA 1GNTA 3KDRA 2GAFD 3RV0A 4PO2A 3D2FA 4G6QA 2NCZA 2QXLA 3B52X 3O3MB 4EZPA 3T48A 2ND1A 3D2EA 3OWGA 4IM3A 3B53X 1SU6A 5FIGA 4WV5A 2V7YA 2GA9D 2YIBA 4F00A 3DPOA 4WV7A 3RV1A 3VEAA 4EZUA 1BPRA 2LM0A 2YIAA 3C7NB 4HY9A 4IWPA 1U00A 3N8EA 4JWIA 4JN4A 3C7NA 4M0MA 3ERCC 4E3CA 3UITA 3L3OM 4EZZA 3B51X 1OA0A 4ILGA 1JQKA 3T47A 1SU7A 4EZVA 4FL9A 2RT6A 3T49A 4R5KA 3T46A 4EZRA 4B9QA 4IM0A 5E84A 4EZWA 1MJGA 4F01A 3SBSA 1YUWA 4JWDA 3DOBA 4ILIA 3I04A 4HYBA 3SBTB 4ILHB 4IM2A 3GI7A 2KHOA 3O3NB 4JWCA 3ZEDA 4JLCA 3LMFA 2BPRA 4E81A 2PY6A 4IW0A 4EZSA 4EZNA 3A98A 4EZQA 2YI9A 2X5CA 3O3OB 3KAVA 3QNJA 2EX3B 2YI8A 3QA8A 3I01A 3FD9A 3I39X 1OAOA 4EZOA 1ZYLA 2Z8YA 3VEBA 4MQDA 3H0XA 1GNLA 3DPQA 4JWEA 4IWOA 1W9MA 1UPXA 5FLEX 1DKYA 4IWQA 1DKZA 1E2UA 2N3KA 3OHXM 2OBMA 1SUFA 4FM3A 1E9VA 1SU8A 1DG4A 2JNSA 2QFFA 3ZEFA 4EZYA 4EZTA 4UDYX 2YIVX 7HSCA 5TKYA 4D8JA 4R5JA 2EWFA 4EZXA 1E1DA 4UDXX 3ER8C 3VKHA 4JNEA 4JNFA 4R5IA 2WINM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HYB A;  3DPP A;  2KHO A;  1DKY A;  1DKZ A;  4JWC A;  4WV5 A;  3OHX M;  4R5L A;  4H6H A;  2WIN M;  3T48 A;  2V7Y A;  4WV7 A;  2BPR A;  4F00 A;  3DPO A;  4E81 A;  4EZS A;  1Q5L A;  3C7N B;  4EZU A;  1BPR A;  1CKR A;  3T4A G;  4EZN A;  1DG4 A;  4HY9 A;  2QFF A;  4EZQ A;  1U00 A;  3N8E A;  4JWI A;  4H6I A;  4JN4 A;  3QNJ A;  3C7N A;  4EZY A;  3L3O M;  4R5G A;  3DQG A;  1DKX A;  2OP6 A;  4EZT A;  4EZZ A;  7HSC A;  5TKY A;  4EZP A;  3T47 A;  4EZV A;  4R5J A;  4FL9 A;  4EZO A;  3T49 A;  4R5K A;  3T46 A;  3D2F A;  4EZX A;  4PO2 A;  4EZR A;  4B9Q A;  5E84 A;  4EZW A;  2QXL A;  3H0X A;  4F01 A;  4JNE A;  3DOB A;  4JNF A;  4R5I A;  1YUW A;  4JWD A;  3DPQ A;  3D2E A;  4JWE A; 
#chains in the Genus database with same CATH topology
 1OA1 A;  3D4Z A;  1Q5L A;  4AVM A;  3Q84 A;  1DKX A;  3BVT A;  2ND0 A;  3ER9 B;  2JNK A;  3DDG A;  3RV0 A;  4PO2 A;  2QXL A;  3B52 X;  2OZN B;  1I4T A;  2ND1 A;  1ZWW A;  1SU6 A;  1PS3 A;  4WV5 A;  3RV1 A;  2C08 A;  4HY9 A;  3BVU A;  3N8E A;  4AZC B;  3C7N A;  4M0M A;  4E3C A;  4FZO A;  2ZXQ A;  1I4L A;  3T49 A;  3T46 A;  4IM0 A;  4F01 A;  1YUW A;  4JWD A;  3DOB A;  4FZS A;  4H8S A;  3LLL A;  4HYB A;  2GF4 A;  4ILH B;  1WDZ A;  2PMR A;  3D4Y A;  3O3N B;  1URU A;  2PY6 A;  4AZ7 A;  4EZQ A;  2YI9 A;  2X5C A;  3CV5 A;  2YI8 A;  3BLB A;  4AZC A;  3I01 A;  1OAO A;  2F7O A;  2LXY A;  4MQD A;  3H0X A;  3OK8 A;  1QWN A;  4IWQ A;  1I49 A;  1E2U A;  2OBM A;  3ACO A;  3BUD A;  4UDY X;  1E1D A;  4JNE A;  4JNF A;  3DX4 A;  1GN9 A;  3EJT A;  3DPP A;  4H6H A;  2O0I 1;  3CKD A;  1CKR A;  3T4A G;  1I4D A;  1TQS A;  4HR1 A;  2YKT A;  2OBL A;  3DDF A;  1GNT A;  2QKW A;  2GAF D;  2F7P A;  3D2F A;  2OW7 A;  2YL9 A;  3CZS A;  4IM3 A;  3G9G A;  4WV7 A;  4NQI A;  3VEA A;  4EZU A;  3C7N B;  1U00 A;  4JN4 A;  3D51 A;  3L3O M;  2YLL A;  3B51 X;  1OA0 A;  3BUQ A;  4EZV A;  2RT6 A;  3SBS A;  3I04 A;  3EJU A;  2KHO A;  1TQW A;  3CAZ A;  3DYT A;  2V0O A;  1TQU A;  3DX0 A;  4E81 A;  4EZS A;  3A98 A;  3O3O B;  3KAV A;  3QNJ A;  4AZI A;  2EX3 B;  4AZB A;  3QA8 A;  4BNE A;  3EJS A;  2FYV A;  3L3P A;  1GNL A;  2OO2 A;  4JWE A;  2F18 A;  1HTY A;  2ELB A;  2EFL A;  4IWO A;  1W9M A;  1DKY A;  3OHX M;  2F7Q A;  1SUF A;  2YL5 A;  3DX2 A;  1R5E A;  2QFF A;  2Q12 A;  2RAJ A;  3D52 A;  4R5J A;  3HAJ A;  3BUB A;  1HWW A;  3VKH A;  3KAW A;  4KIK A;  4NSW A;  2D1L A;  4R5L A;  2WYI A;  4HR1 B;  3F7W A;  4NPH A;  4H6I A;  4R5G A;  2OP6 A;  4I43 A;  1LQ7 A;  3KDR A;  2NCZ A;  3QWE A;  3O3M B;  3CZN A;  2MI7 A;  3D2E A;  3BUI A;  3B53 X;  1O7D C;  2X3X A;  3DPO A;  1X04 A;  2WYH A;  2F1B A;  1BPR A;  2YIA A;  4IWP A;  3UIT A;  2OW6 A;  4EZZ A;  3QNI A;  4AZ6 A;  3PLT A;  1Y2O A;  1SU7 A;  3QE6 A;  3T47 A;  3D50 A;  3EJQ A;  4WPE A;  4EZR A;  5E84 A;  1MJG A;  4FZP A;  4ILI A;  3HAH A;  2D4C A;  4I1Q A;  2Z0V A;  4JWC A;  3ZED A;  3LMF A;  3M3W A;  4IW0 A;  1TQT A;  2YLA A;  3LVT A;  3Q0K A;  3BUP A;  3I39 X;  1ZYL A;  2Z8Y A;  3VEB A;  3DPQ A;  3BVV A;  5C5B A;  2RAI A;  4AZG A;  1UPX A;  5FLE X;  2ALW A;  2X3W A;  2N3K A;  3DX1 A;  2Q13 A;  2F7R A;  4FM3 A;  1DG4 A;  2JNS A;  1TQV A;  4DCN C;  4EZT A;  2YIV X;  2Z0N A;  5TKY A;  4D8J A;  3EJR A;  2EWF A;  4EZX A;  1HXK A;  1R33 A;  4AKV A;  3SYV A;  3ER8 C;  3HAI A;  2WIN M;  4KIK B;  4DYL A;  4JL9 A;  1QWU A;  3CVR A;  2F1A A;  3ABH A;  3EJP A;  3DQG A;  3BVX A;  2RAK A;  4G6Q A;  4ATM A;  4EZP A;  3T48 A;  3OWG A;  5KBP A;  4AZ5 A;  2X3V A;  3DX3 A;  5FIG A;  3I2W A;  2V7Y A;  2GA9 D;  2YIB A;  4AZH A;  4F00 A;  1O7D B;  2LM0 A;  4JWI A;  3ERC C;  4ILG A;  1JQK A;  2Z0O A;  4FL9 A;  4R5K A;  4B9Q A;  4EZW A;  1R34 A;  1X03 A;  2YL8 A;  3SBT B;  4IM2 A;  3GI7 A;  2FIC A;  2EFK A;  4JLC A;  2YL6 A;  2BPR A;  4WPC A;  4EZN A;  1YWM A;  3FD9 A;  3RPM A;  4EZO A;  3SOG A;  5C5B B;  1DKZ A;  1E9V A;  1SU8 A;  3ZEF A;  4EZY A;  7HSC A;  1QX1 A;  4UDX X;  4R5I A;  3BVW A; 
#chains in the Genus database with same CATH homology
 4KIK B;  1GN9 A;  4JL9 A;  3DPP A;  3KAW A;  1OA1 A;  4KIK A;  4R5L A;  4H6H A;  4HR1 B;  1Q5L A;  1CKR A;  3T4A G;  3F7W A;  4NPH A;  4H6I A;  4HR1 A;  3DQG A;  4R5G A;  1DKX A;  2OP6 A;  2ND0 A;  3ER9 B;  4I43 A;  2OBL A;  1GNT A;  3KDR A;  2GAF D;  3RV0 A;  4PO2 A;  3D2F A;  4G6Q A;  2NCZ A;  2QXL A;  3B52 X;  3O3M B;  4EZP A;  3T48 A;  2ND1 A;  3D2E A;  3OWG A;  4IM3 A;  3B53 X;  1SU6 A;  5FIG A;  4WV5 A;  2V7Y A;  2GA9 D;  2YIB A;  4F00 A;  3DPO A;  4WV7 A;  3RV1 A;  3VEA A;  4EZU A;  1BPR A;  2LM0 A;  2YIA A;  3C7N B;  4HY9 A;  4IWP A;  1U00 A;  3N8E A;  4JWI A;  4JN4 A;  3C7N A;  4M0M A;  3ERC C;  4E3C A;  3UIT A;  3L3O M;  4EZZ A;  3B51 X;  1OA0 A;  4ILG A;  1JQK A;  3T47 A;  1SU7 A;  4EZV A;  4FL9 A;  2RT6 A;  3T49 A;  4R5K A;  3T46 A;  4EZR A;  4B9Q A;  4IM0 A;  5E84 A;  4EZW A;  1MJG A;  4F01 A;  3SBS A;  1YUW A;  4JWD A;  3DOB A;  4ILI A;  3I04 A;  4HYB A;  3SBT B;  4ILH B;  4IM2 A;  3GI7 A;  2KHO A;  3O3N B;  4JWC A;  3ZED A;  4JLC A;  3LMF A;  2BPR A;  4E81 A;  2PY6 A;  4IW0 A;  4EZS A;  4EZN A;  3A98 A;  4EZQ A;  2YI9 A;  2X5C A;  3O3O B;  3KAV A;  3QNJ A;  2EX3 B;  2YI8 A;  3QA8 A;  3I01 A;  3FD9 A;  3I39 X;  1OAO A;  4EZO A;  1ZYL A;  2Z8Y A;  3VEB A;  4MQD A;  3H0X A;  1GNL A;  3DPQ A;  4JWE A;  4IWO A;  1W9M A;  1UPX A;  5FLE X;  1DKY A;  4IWQ A;  1DKZ A;  1E2U A;  2N3K A;  3OHX M;  2OBM A;  1SUF A;  4FM3 A;  1E9V A;  1SU8 A;  1DG4 A;  2JNS A;  2QFF A;  3ZEF A;  4EZY A;  4EZT A;  4UDY X;  2YIV X;  7HSC A;  5TKY A;  4D8J A;  4R5J A;  2EWF A;  4EZX A;  1E1D A;  4UDX X;  3ER8 C;  3VKH A;  4JNE A;  4JNF A;  4R5I A;  2WIN M; 
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