The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
67
|
sequence length |
255
|
structure length |
255
|
Chain Sequence |
GFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVGLPTTHYARLQWLKSIGIPVNPEIRLCNGADEVLDFYQDIQNKRSSLGYDIDGTVLKINDIALQNELGFISKAPRWAIAYKFPAQEELT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
rcsb |
| molecule keywords |
DNA ligase
|
| molecule tags |
Ligase
|
| source organism |
Haemophilus influenzae
|
| total genus |
67
|
| structure length |
255
|
| sequence length |
255
|
| ec nomenclature |
ec
6.5.1.2: DNA ligase (NAD(+)). |
| pdb deposition date | 2007-11-07 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase; Chain A, domain 1 | D-amino Acid Aminotransferase; Chain A, domain 1 |
#chains in the Genus database with same CATH superfamily 1ZAU A; 3SGI A; 4GLW A; 3BAC A; #chains in the Genus database with same CATH topology 4PZ6 A; 4YAJ B; 4ZOL F; 4NYE A; 3V4S A; 4ZHQ F; 2GQS A; 4DAA A; 4WBN F; 4EFB A; 4CKB A; 3LWB A; 1EZ1 A; 2HJW A; 1A3G A; 2IP4 A; 3GDE A; 5I47 A; 2GLT A; 2X0S A; 1GSO A; 4C5B A; 4MA5 A; 4O7L A; 4ZQI A; 2YZN A; 3KAK A; 3K5H A; 4O7N A; 3GID A; 4EGJ A; 4O4H F; 5I5V A; 2CZG A; 3GLK A; 3TY8 A; 3U9T A; 3G8D A; 3K5I A; 3VOT A; 1DIK A; 3JSN A; 5D8D A; 5FNV F; 3N8D A; 3NUA A; 3VPB A; 4FFP A; 1PX2 A; 4I4T F; 3BAC A; 3NC0 B; 4IIJ F; 1KJQ A; 4QSH A; 3HT5 A; 1FVI A; 2EJ0 A; 2ABJ A; 2Z04 A; 3SGI A; 3TQT A; 5K2M A; 2YYA A; 1CKM A; 4PZ8 A; 3WWH A; 3WWI A; 5JQG F; 4CE5 A; 5JH7 F; 2I87 A; 1W96 A; 3RR5 A; 4M0J A; 2YRX A; 4IHJ F; 3TIG A; 3V4Z A; 4FGR A; 3BG5 A; 2R84 A; 1EKV A; 3L2P A; 5I60 A; 4WHX A; 5I5Y A; 2VPQ A; 4HR7 A; 2HIX A; 2DAB A; 4MV1 A; 2HGW A; 3K3P A; 4I50 F; 4TM5 A; 2NU9 B; 5CA1 F; 3VPD A; 1C30 A; 5DIS C; 2W6Q A; 3JSL A; 2ZDH A; 1EUC B; 4TUY F; 1GSH A; 4MV9 A; 3GJX B; 4CC5 A; 5I5U A; 4M9U A; 3KRE A; 1M0T A; 3HB9 A; 3R5F A; 3LUL A; 1DAA A; 2YZM A; 2W6P A; 3I12 A; 1M0W A; 2FP4 B; 3W5O A; 4JXU A; 4NZN A; 4O86 A; 2R86 A; 1W93 A; 5I5W A; 3N6R A; 1SCU B; 4HN2 A; 3JZ6 A; 2Q2T A; 3TII A; 1TAE A; 4UCV A; 2HIV A; 4UFZ A; 2OLS A; 2HDK A; 3DTG A; 5LP6 F; 1OBG A; 5JVL A; 3AW8 A; 4CKE A; 3U0G A; 4LH7 A; 5C1O A; 3E5N A; 1I1L A; 1CKN A; 5J2U F; 5IYZ F; 1E4E A; 2HG8 A; 4MA0 A; 3GB8 B; 2SCU B; 2R85 A; 1T36 A; 5BWR A; 2W71 A; 5CE8 A; 1KJ9 A; 2EJ2 A; 2YWV A; 2J9G A; 5HNE A; 3WWJ A; 5KKN B; 3UFX B; 3Q2O A; 4CKC A; 2PBZ A; 4FFO A; 5JQW A; 1KJI A; 1UC9 A; 1CQI B; 3T7A A; 3KAL A; 1VKZ A; 3DTF A; 5LXT F; 3W1G A; 1DV2 A; 4PZ7 A; 2DWC A; 2FPP B; 4UCU A; 1UC8 A; 4YBZ B; 1CKN B; 4EQ5 A; 3OUZ A; 1E4E B; 4UCS A; 2FPI B; 5K3W A; 2R7L A; 4MAM A; 5BPH A; 4MV7 A; 1GLV A; 3R5X A; 4MV3 A; 2CNU A; 3LP8 A; 1BNC A; 1VBG A; 1KJ8 A; 4Q4D A; 3TIN A; 4DQN A; 2P0A A; 4IZO A; 3VMM A; 1JDE A; 3T9C A; 2VQD A; 3R9R A; 4E4T A; 5C8Y F; 1KC7 A; 4HNU A; 5D1O A; 1OBD A; 4XYM B; 5CM0 A; 1IYD A; 1IOW A; 2YL2 A; 5JVD F; 1JKJ B; 1EYZ A; 5CR5 A; 4E6N A; 1ULZ A; 4XYL B; 4MV4 A; 2ZDQ A; 5BWW A; 1EHI A; 5C1P A; 1AUV A; 4C5C A; 3W1B A; 5D1P A; 5FPO A; 4YAK B; 2XCL A; 3T9A A; 2R7M A; 3CEB A; 2COI A; 1GGO A; 3TW7 A; 1VBH A; 2W6Z A; 4FE2 A; 4PBC A; 3WO0 A; 1I2K A; 4CC6 A; 3DF7 A; 5KX5 F; 2GQR A; 3WNZ A; 1P16 A; 4EEQ A; 1EUD B; 5E25 A; 5GON F; 3BA9 A; 4L1K A; 3SE7 A; 2HHF A; 4O4I F; 3OUU A; 5BMV F; 4GLX A; 2V59 A; 4ZI7 F; 5HV6 A; 4NZM A; 3G8C A; 2CFM A; 2HGX A; 2R87 A; 3JRW A; 4GLW A; 2WYO A; 5EZY F; 4CHI A; 3ORQ A; 4O4L F; 4O83 A; 3UYY A; 4CMD A; 3MWD A; 4FFR A; 1B04 A; 2ZDG A; 2HVR A; 3RV3 A; 3BA8 A; 1ET0 A; 3ETH A; 4HNT A; 4Q4C A; 3RFC A; 4O7V A; 3JRX A; 3DAA A; 2I80 A; 4IWX A; 5LOV F; 2GPS A; 2NUA B; 1KUT A; 3KAJ A; 2PVP A; 5FR9 A; 1C3O A; 1JLL B; 4O7S A; 4RZQ A; 4IWY A; 2DZD A; 1CS0 A; 3VNN A; 1XDN A; 1CE8 A; 2ODT X; 2V58 A; 5DGI A; 5LYJ F; 5FPR A; 2YW2 A; 3T99 A; 4DIM A; 2COJ A; 1DV1 A; 1GSA A; 3HBL A; 3R23 A; 1CQJ B; 1KEE A; 2CNV A; 5DMX A; 5HBR B; 3T9F A; 4CMF A; 2W6O A; 1KBL A; 2XD4 A; 5BWV A; 3BAA A; 3RTX A; 4NZO A; 3NBZ B; 2W6M A; 4O82 A; 4EGQ A; 4O2A F; 2FB9 A; 3TY9 A; 3QFF A; 3ETJ A; 4O4J F; 1XK5 A; 2QF7 A; 5DGH A; 2R82 A; 5BYA A; 1KT8 A; 2I8C A; 4O7T A; 1Z2N X; 2V5A A; 5DAA A; 2DIK A; 3JZF A; 4K6N A; 3CSW A; 4TV8 F; 1JDB B; 3U55 A; 3S24 A; 2VUG A; 1V9P A; 3PN1 A; 5BPF A; 2R7N A; 2Q7D A; 3MWE A; 1S68 A; 2DLN A; 1AUX A; 2YRW A; 2NU8 B; 3WO1 A; 3RV4 A; 1WRV A; 3TEK A; 2EJ3 A; 3JZI A; 4O7W A; 1KJJ A; 3T9E A; 5BWU A; 4FU0 A; 3LQS A; 4XX0 B; 3VA7 A; 3KYH C; 5KS8 A; 4MV8 A; 4FFL A; 3TY5 A; 2Z02 A; 4TV9 F; 3R5H A; 4O7R A; 5D1O B; 3Q1K A; 5BYB A; 2FPG B; 4EFE A; 2W6N A; 4ME6 A; 4RCN A; 2CNQ A; 5H80 A; 1X9N A; 4O84 A; 4C5A A; 2W70 A; 3T54 A; 3ORR A; 4FFN A; 4O2B F; 2DAA A; 4HQ6 A; 1TA8 A; 3U9S A; 4LH6 A; 2R7K A; 2GPW A; 1A9X A; 2HVQ A; 1ZAU A; 3UZB A; 2ZGI A; 3QWU A; 2HGS A; 4DRF A; 2YS7 A; 3U54 A; 4TVI A; 1I7N A; 2NU7 B; 1KTA A; 2C00 A; 4MV6 A; 3UQ8 A; 5BWX A; 3MJF A; 4UCO A; 4DLK A; 2A1H A; 3HO8 A; 2Q2U A; 2HHF B; 3RUP A; 5J2T F; 5LA6 F; 2EIY A; 1IYE A; 4UCR A; 1EKF A; 1I2L A; 1BXR A; 1Z2O X; 4YB8 B; 1A48 A; 5I5S A; 4O7Z A; 1Z2P X; 3QQM A; 1PK8 A; 4EG0 A; 4UUG A; 1CKO A; 4HNV A; 1I1M A; 1VS0 A; 1IOV A; 2YZL A; 2VR1 A; 3UZO A; 2NU6 B; 2COG A; 4YJ2 F; 3TW6 A; 1I7L A; 1WR2 A; 5CAE B; 1P8L A; 2Y4R A; 5I5X A; 1B6R A; 1B6S A; 5CA0 F; 1A0G A; 3SNO A; 1M6V A; 2YZG A; 3BAB A; 3AX6 A; 4O81 A; 4FFM A; 3T9D A; 3PFF A; 1EKP A; 4I55 F; 2YS6 A; 3T9B A; 3VPC A; 2X5R A; 2HVS A; 1DGS A; 2QB5 A; 5CB4 F; 4O7Y A; 2QK4 A; 5I5T A; 4YJ3 F; 5BWT A; 3NBY B; 4UCT A; 1G2W A; 1A0I A; 2PN1 A; 4XZ3 B; 4Y8V B; 1I1K A; 2OWO A; #chains in the Genus database with same CATH homology 4NZM A; 1WRV A; 3TEK A; 2EJ3 A; 2HGX A; 3T9E A; 5BWU A; 3LQS A; 4GLW A; 2HDK A; 3DTG A; 5KS8 A; 4DAA A; 4CHI A; 4CKB A; 1A3G A; 4CKE A; 3U0G A; 3UYY A; 4CMD A; 5I47 A; 1I1L A; 5BYB A; 2HG8 A; 4RCN A; 1ET0 A; 5BWR A; 4Q4C A; 5CE8 A; 2EJ2 A; 3T54 A; 3DAA A; 3WWJ A; 5HNE A; 4IWX A; 4CKC A; 1UC9 A; 5I5V A; 2DAA A; 3T7A A; 3DTF A; 1ZAU A; 3UZB A; 2ZGI A; 3BAC A; 1UC8 A; 5FR9 A; 4TVI A; 3HT5 A; 2EJ0 A; 1KTA A; 2ABJ A; 4IWY A; 5K3W A; 3SGI A; 5K2M A; 3WWI A; 3WWH A; 5BWX A; 4CE5 A; 2A1H A; 2ODT X; 2HHF B; 4M0J A; 4Q4D A; 5DGI A; 4DQN A; 3T99 A; 2EIY A; 1IYE A; 2COJ A; 1EKF A; 1I2L A; 3T9C A; 1EKV A; 5I60 A; 4WHX A; 5I5Y A; 5I5S A; 3T9F A; 4CMF A; 3QQM A; 4UUG A; 2DAB A; 1I1M A; 5CM0 A; 1IYD A; 2HGW A; 4TM5 A; 5BWV A; 3UZO A; 3VPD A; 2COG A; 5CR5 A; 4NZO A; 5BWW A; 5I5U A; 2Y4R A; 5I5X A; 3T9A A; 3CEB A; 1A0G A; 2COI A; 3SNO A; 5DGH A; 3TW7 A; 1KT8 A; 5BYA A; 3LUL A; 1DAA A; 3T9D A; 4PBC A; 3PFF A; 1EKP A; 3T9B A; 1I2K A; 5DAA A; 4JXU A; 4NZN A; 2X5R A; 4K6N A; 3CSW A; 2QB5 A; 5I5W A; 5I5T A; 2Q7D A; 5E25 A; 5BWT A; 1G2W A; 4HN2 A; 3JZ6 A; 2HHF A; 1I1K A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
