3NBY | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	361
structure length	272
Chain Sequence	GSLNELALKLAGLDISQDLNSTAAPHPRLSQYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTKKLPKHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRAKDYTILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGHSPDHPGCLMEN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Gtp-binding protein/transport protein
source organism	Homo sapiens
publication title	NES consensus redefined by structures of PKI-type and Rev-type nuclear export signals bound to CRM1. pubmed doi rcsb
molecule keywords	Snurportin-1
total genus	57
structure length	272
sequence length	361
chains with identical sequence	E
ec nomenclature
pdb deposition date	2010-06-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF11538	Snurportin1	Snurportin1

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.470.30	Alpha Beta	2-Layer Sandwich	D-amino Acid Aminotransferase; Chain A, domain 1	DNA ligase/mRNA capping enzyme	3nbyB00

3BAAA 4UCSA 3RTXA 4UCVA 3GDEA 3PN1A 3UQ8A 3BA9A 4UCTA 1CKNB 3JSLA 3JSNA 3TY8A 3NBZB 1A0IA 4DRFA 5FPRA 1DGSA 3VNNA 5D1OB 3W1BA 3NBYB 1P16A 4PZ8A 3BABA 2CFMA 4PZ7A 3KYHC 4GLXA 3L2PA 1CKNA 1P8LA 1X9NA 1CKMA 4UFZA 1S68A 4LH6A 5FPOA 1XK5A 4EFEA 1TA8A 4PZ6A 2HVSA 1B04A 3RR5A 1CKOA 3BA8A 3S24A 4E6NA 2OWOA 2HVRA 1FVIA 2VUGA 4UCUA 3NC0B 3TY9A 5DISC 3GB8B 1VS0A 5D1PA 2HIXA 3GJXB 2Q2TA 4CC5A 4EEQA 4EFBA 4LH7A 5D1OA 2HIVA 2HVQA 4UCRA 3W1GA 4CC6A 4EQ5A 1XDNA 3QWUA 2Q2UA 4UCOA 3W5OA 1TAEA 1V9PA 3TY5A
chains in the Genus database with same CATH superfamily

3VPDA 3R5XA 2DZDA 3RTXA 4NZOA 3TIIA 3UFXB 1GSOA 1EYZA 3UQ8A 3BA9A 5JVDF 2PBZA 4UCTA 1E4EB 2QF7A 3WWHA 5BWWA 1IOVA 5CE8A 1I1KA 2COGA 3DTFA 3JSNA 4MV3A 1IYEA 3OUUA 3VPCA 4O7ZA 2OLSA 4IZOA 2VPQA 4NZNA 4FFLA 1KBLA 5D1OB 1VKZA 1KJ9A 3AX6A 3BABA 2PVPA 5I5TA 2CFMA 2HHFA 4TUYF 4O83A 2V5AA 2SCUB 3KYHC 5CA1F 3TQTA 3N8DA 4FE2A 1UC9A 2ABJA 4O7YA 3CEBA 3GLKA 1JDEA 3L2PA 3MWDA 2GQRA 1VBHA 3TW6A 3JZFA 1I1MA 3Q1KA 1CKMA 3RV3A 5DAAA 1PX2A 4YB8B 3T9CA 2YRWA 4CMFA 3AW8A 5DMXA 1G2WA 3MJFA 2NU6B 1B04A 3TIGA 1A0GA 1B6SA 5I60A 3S24A 2YYAA 4C5BA 1ULZA 4FFMA 3LP8A 2COIA 1OBDA 1AUXA 3NC0B 2R87A 3KAJA 4RCNA 2C00A 5D1PA 2XD4A 4CKEA 1EKVA 2Z02A 3BACA 4YBZB 4FFRA 4XX0B 5BWUA 1KUTA 1KJIA 2Q2TA 5CB4F 3SGIA 4ZQIA 4UUGA 2HVQA 4UCRA 4CC6A 1KJJA 2NUAB 1EKFA 3NUAA 4EQ5A 3QWUA 2COJA 3HB9A 4DQNA 1I2KA 1KJQA 4MV7A 3G8CA 1WR2A 2W6NA 4IHJF 5BWTA 1EUDB 4WBNF 3TY5A 3BAAA 4IWXA 4YJ3F 3T54A 2EJ3A 4O84A 2XCLA 3SE7A 5KKNB 4RZQA 3K5HA 4DIMA 4ME6A 3JRWA 4O7SA 3KALA 1CKNB 4FFNA 3T9AA 2CNUA 3MWEA 4MV1A 3T99A 5BYAA 5DGHA 5D8DA 4O7LA 4Y8VB 3TEKA 3JRXA 4WHXA 2GLTA 4I50F 4TVIA 3WWIA 1W96A 2EJ0A 4FU0A 2R7LA 4EGJA 1DV2A 5LA6F 4O7RA 5CR5A 1P16A 1Z2NX 1IYDA 4PZ7A 4TV8F 2W6PA 3VMMA 3BG5A 4E4TA 5JH7F 1A48A 2W6ZA 4M9UA 2DABA 2HGSA 3CSWA 4O7VA 4TM5A 4IWYA 3U9TA 1GSHA 1S68A 5HBRB 4LH6A 4MAMA 3ORQA 1WRVA 1C3OA 3RV4A 3OUZA 2W70A 4IIJF 2I8CA 4PZ6A 3T7AA 1M0TA 1SCUB 4I4TF 4K6NA 2Q7DA 1I1LA 1A3GA 4ZHQF 1GSAA 3BA8A 2OWOA 3K5IA 2FB9A 3T9BA 2VUGA 4UCUA 4O7TA 3JZ6A 4MV9A 5CA0F 3GB8B 1KEEA 1BNCA 4O81A 2NU8B 5LXTF 2HHFB 3GJXB 5I47A 3G8DA 4Q4CA 1EZ1A 2HGWA 3E5NA 3ETJA 3SNOA 3UYYA 4TV9F 3WNZA 3GIDA 3U55A 3VPBA 3JZIA 4CC5A 2EIYA 4JXUA 4EGQA 1I7NA 5I5SA 2CNQA 4I55F 4M0JA 3R9RA 1DAAA 1I7LA 5BWXA 3W1GA 2CZGA 4CMDA 3DF7A 1BXRA 4UCOA 2YZNA 4ZOLF 2I87A 3UZBA 3LULA 3DAAA 4FFPA 5CAEB 2FPGB 2R84A 3T9DA 4DAAA 4UCVA 2GQSA 4C5AA 3TINA 2CNVA 5J2TF 4NZMA 2NU9B 2V59A 5K3WA 3TY8A 3NBZB 3QFFA 2FP4B 1CQJB 1Z2PX 5I5WA 1A0IA 4DRFA 2NU7B 5DGIA 1DGSA 3U9SA 3VNNA 2YS6A 4O4IF 3NBYB 4XYMB 1OBGA 5J2UF 2X5RA 2ZDGA 2QB5A 4Q4DA 5FNVF 2W71A 4MV6A 3DTGA 5GONF 2DLNA 3U0GA 4C5CA 2GPWA 2VR1A 1CKNA 1P8LA 5BWVA 3VA7A 3K3PA 2VQDA 4QSHA 4UFZA 2DWCA 1KJ8A 5FPOA 5C1OA 5BPFA 1XK5A 1JDBB 3LQSA 2J9GA 1TA8A 5E25A 2X0SA 5IYZF 2YWVA 3RR5A 1CKOA 1IOWA 5KS8A 5JQGF 5BPHA 2HG8A 4E6NA 5JQWA 2W6MA 4FFOA 5FR9A 2DAAA 2W6QA 2YZGA 3LWBA 5I5VA 3TY9A 5DISC 1E4EA 1VS0A 2HIXA 2R85A 3ETHA 1EHIA 1DV1A 4XYLB 5H80A 1I2LA 2Y4RA 4EEQA 5KX5F 4PBCA 4CE5A 4EFBA 3QQMA 1M0WA 5D1OA 3R5FA 1KTAA 3UZOA 2FPIB 3R23A 1CQIB 1AUVA 3RUPA 2WYOA 2R7MA 1ET0A 1V9PA 4XZ3B 1VBGA 2I80A 1KT8A 4UCSA 3WWJA 3KREA 4HQ6A 3HT5A 1W93A 4MV4A 2PN1A 3GDEA 1C30A 2R86A 3PN1A 5LYJF 1T36A 5LOVF 2GPSA 2V58A 2HDKA 4HR7A 3R5HA 1DIKA 1B6RA 3JSLA 3HO8A 3V4SA 2P0AA 5K2MA 1CS0A 4O7NA 4HN2A 5FPRA 3KAKA 5LP6F 1UC8A 3PFFA 3WO1A 4YAJB 4O2BF 5I5YA 3ORRA 3W1BA 4YAKB 5I5UA 3HBLA 5I5XA 2ZGIA 4PZ8A 4DLKA 4O7WA 1Z2OX 1M6VA 3T9FA 4MA5A 4O86A 4HNVA 4GLXA 5EZYF 4O4HF 4O4JF 5BMVF 2YS7A 4CKCA 3I12A 3RFCA 5HV6A 4EG0A 1A9XA 1GLVA 1EUCB 3TW7A 4ZI7F 5HNEA 1X9NA 3Q2OA 2FPPB 2R82A 2W6OA 1EKPA 2YW2A 2HGXA 4EFEA 2YZLA 3WO0A 2R7NA 1ZAUA 2YZMA 2HVSA 3U54A 4FGRA 3T9EA 4O2AF 2Z04A 4CKBA 2HVRA 1JLLB 1FVIA 3VOTA 2HJWA 2EJ2A 4HNTA 1PK8A 5C8YF 4MV8A 4MA0A 4O4LF 5BWRA 4GLWA 4O82A 4NYEA 4YJ2F 2ZDHA 3V4ZA 2YL2A 2ZDQA 2R7KA 4CHIA 2DIKA 1GGOA 4L1KA 5JVLA 4LH7A 1JKJB 2HIVA 4HNUA 2ODTX 2IP4A 2QK4A 5C1PA 1CE8A 1XDNA 5BYBA 3N6RA 1KC7A 2Q2UA 2A1HA 2YRXA 3W5OA 1TAEA 5CM0A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3BAA A;  4UCS A;  3RTX A;  4UCV A;  3GDE A;  3PN1 A;  3UQ8 A;  3BA9 A;  4UCT A;  1CKN B;  3JSL A;  3JSN A;  3TY8 A;  3NBZ B;  1A0I A;  4DRF A;  5FPR A;  1DGS A;  3VNN A;  5D1O B;  3W1B A;  3NBY B;  1P16 A;  4PZ8 A;  3BAB A;  2CFM A;  4PZ7 A;  3KYH C;  4GLX A;  3L2P A;  1CKN A;  1P8L A;  1X9N A;  1CKM A;  4UFZ A;  1S68 A;  4LH6 A;  5FPO A;  1XK5 A;  4EFE A;  1TA8 A;  4PZ6 A;  2HVS A;  1B04 A;  3RR5 A;  1CKO A;  3BA8 A;  3S24 A;  4E6N A;  2OWO A;  2HVR A;  1FVI A;  2VUG A;  4UCU A;  3NC0 B;  3TY9 A;  5DIS C;  3GB8 B;  1VS0 A;  5D1P A;  2HIX A;  3GJX B;  2Q2T A;  4CC5 A;  4EEQ A;  4EFB A;  4LH7 A;  5D1O A;  2HIV A;  2HVQ A;  4UCR A;  3W1G A;  4CC6 A;  4EQ5 A;  1XDN A;  3QWU A;  2Q2U A;  4UCO A;  3W5O A;  1TAE A;  1V9P A;  3TY5 A; 
#chains in the Genus database with same CATH topology
 3VPD A;  3R5X A;  2DZD A;  3RTX A;  4NZO A;  3TII A;  3UFX B;  1GSO A;  1EYZ A;  3UQ8 A;  3BA9 A;  5JVD F;  2PBZ A;  4UCT A;  1E4E B;  2QF7 A;  3WWH A;  5BWW A;  1IOV A;  5CE8 A;  1I1K A;  2COG A;  3DTF A;  3JSN A;  4MV3 A;  1IYE A;  3OUU A;  3VPC A;  4O7Z A;  2OLS A;  4IZO A;  2VPQ A;  4NZN A;  4FFL A;  1KBL A;  5D1O B;  1VKZ A;  1KJ9 A;  3AX6 A;  3BAB A;  2PVP A;  5I5T A;  2CFM A;  2HHF A;  4TUY F;  4O83 A;  2V5A A;  2SCU B;  3KYH C;  5CA1 F;  3TQT A;  3N8D A;  4FE2 A;  1UC9 A;  2ABJ A;  4O7Y A;  3CEB A;  3GLK A;  1JDE A;  3L2P A;  3MWD A;  2GQR A;  1VBH A;  3TW6 A;  3JZF A;  1I1M A;  3Q1K A;  1CKM A;  3RV3 A;  5DAA A;  1PX2 A;  4YB8 B;  3T9C A;  2YRW A;  4CMF A;  3AW8 A;  5DMX A;  1G2W A;  3MJF A;  2NU6 B;  1B04 A;  3TIG A;  1A0G A;  1B6S A;  5I60 A;  3S24 A;  2YYA A;  4C5B A;  1ULZ A;  4FFM A;  3LP8 A;  2COI A;  1OBD A;  1AUX A;  3NC0 B;  2R87 A;  3KAJ A;  4RCN A;  2C00 A;  5D1P A;  2XD4 A;  4CKE A;  1EKV A;  2Z02 A;  3BAC A;  4YBZ B;  4FFR A;  4XX0 B;  5BWU A;  1KUT A;  1KJI A;  2Q2T A;  5CB4 F;  3SGI A;  4ZQI A;  4UUG A;  2HVQ A;  4UCR A;  4CC6 A;  1KJJ A;  2NUA B;  1EKF A;  3NUA A;  4EQ5 A;  3QWU A;  2COJ A;  3HB9 A;  4DQN A;  1I2K A;  1KJQ A;  4MV7 A;  3G8C A;  1WR2 A;  2W6N A;  4IHJ F;  5BWT A;  1EUD B;  4WBN F;  3TY5 A;  3BAA A;  4IWX A;  4YJ3 F;  3T54 A;  2EJ3 A;  4O84 A;  2XCL A;  3SE7 A;  5KKN B;  4RZQ A;  3K5H A;  4DIM A;  4ME6 A;  3JRW A;  4O7S A;  3KAL A;  1CKN B;  4FFN A;  3T9A A;  2CNU A;  3MWE A;  4MV1 A;  3T99 A;  5BYA A;  5DGH A;  5D8D A;  4O7L A;  4Y8V B;  3TEK A;  3JRX A;  4WHX A;  2GLT A;  4I50 F;  4TVI A;  3WWI A;  1W96 A;  2EJ0 A;  4FU0 A;  2R7L A;  4EGJ A;  1DV2 A;  5LA6 F;  4O7R A;  5CR5 A;  1P16 A;  1Z2N X;  1IYD A;  4PZ7 A;  4TV8 F;  2W6P A;  3VMM A;  3BG5 A;  4E4T A;  5JH7 F;  1A48 A;  2W6Z A;  4M9U A;  2DAB A;  2HGS A;  3CSW A;  4O7V A;  4TM5 A;  4IWY A;  3U9T A;  1GSH A;  1S68 A;  5HBR B;  4LH6 A;  4MAM A;  3ORQ A;  1WRV A;  1C3O A;  3RV4 A;  3OUZ A;  2W70 A;  4IIJ F;  2I8C A;  4PZ6 A;  3T7A A;  1M0T A;  1SCU B;  4I4T F;  4K6N A;  2Q7D A;  1I1L A;  1A3G A;  4ZHQ F;  1GSA A;  3BA8 A;  2OWO A;  3K5I A;  2FB9 A;  3T9B A;  2VUG A;  4UCU A;  4O7T A;  3JZ6 A;  4MV9 A;  5CA0 F;  3GB8 B;  1KEE A;  1BNC A;  4O81 A;  2NU8 B;  5LXT F;  2HHF B;  3GJX B;  5I47 A;  3G8D A;  4Q4C A;  1EZ1 A;  2HGW A;  3E5N A;  3ETJ A;  3SNO A;  3UYY A;  4TV9 F;  3WNZ A;  3GID A;  3U55 A;  3VPB A;  3JZI A;  4CC5 A;  2EIY A;  4JXU A;  4EGQ A;  1I7N A;  5I5S A;  2CNQ A;  4I55 F;  4M0J A;  3R9R A;  1DAA A;  1I7L A;  5BWX A;  3W1G A;  2CZG A;  4CMD A;  3DF7 A;  1BXR A;  4UCO A;  2YZN A;  4ZOL F;  2I87 A;  3UZB A;  3LUL A;  3DAA A;  4FFP A;  5CAE B;  2FPG B;  2R84 A;  3T9D A;  4DAA A;  4UCV A;  2GQS A;  4C5A A;  3TIN A;  2CNV A;  5J2T F;  4NZM A;  2NU9 B;  2V59 A;  5K3W A;  3TY8 A;  3NBZ B;  3QFF A;  2FP4 B;  1CQJ B;  1Z2P X;  5I5W A;  1A0I A;  4DRF A;  2NU7 B;  5DGI A;  1DGS A;  3U9S A;  3VNN A;  2YS6 A;  4O4I F;  3NBY B;  4XYM B;  1OBG A;  5J2U F;  2X5R A;  2ZDG A;  2QB5 A;  4Q4D A;  5FNV F;  2W71 A;  4MV6 A;  3DTG A;  5GON F;  2DLN A;  3U0G A;  4C5C A;  2GPW A;  2VR1 A;  1CKN A;  1P8L A;  5BWV A;  3VA7 A;  3K3P A;  2VQD A;  4QSH A;  4UFZ A;  2DWC A;  1KJ8 A;  5FPO A;  5C1O A;  5BPF A;  1XK5 A;  1JDB B;  3LQS A;  2J9G A;  1TA8 A;  5E25 A;  2X0S A;  5IYZ F;  2YWV A;  3RR5 A;  1CKO A;  1IOW A;  5KS8 A;  5JQG F;  5BPH A;  2HG8 A;  4E6N A;  5JQW A;  2W6M A;  4FFO A;  5FR9 A;  2DAA A;  2W6Q A;  2YZG A;  3LWB A;  5I5V A;  3TY9 A;  5DIS C;  1E4E A;  1VS0 A;  2HIX A;  2R85 A;  3ETH A;  1EHI A;  1DV1 A;  4XYL B;  5H80 A;  1I2L A;  2Y4R A;  4EEQ A;  5KX5 F;  4PBC A;  4CE5 A;  4EFB A;  3QQM A;  1M0W A;  5D1O A;  3R5F A;  1KTA A;  3UZO A;  2FPI B;  3R23 A;  1CQI B;  1AUV A;  3RUP A;  2WYO A;  2R7M A;  1ET0 A;  1V9P A;  4XZ3 B;  1VBG A;  2I80 A;  1KT8 A;  4UCS A;  3WWJ A;  3KRE A;  4HQ6 A;  3HT5 A;  1W93 A;  4MV4 A;  2PN1 A;  3GDE A;  1C30 A;  2R86 A;  3PN1 A;  5LYJ F;  1T36 A;  5LOV F;  2GPS A;  2V58 A;  2HDK A;  4HR7 A;  3R5H A;  1DIK A;  1B6R A;  3JSL A;  3HO8 A;  3V4S A;  2P0A A;  5K2M A;  1CS0 A;  4O7N A;  4HN2 A;  5FPR A;  3KAK A;  5LP6 F;  1UC8 A;  3PFF A;  3WO1 A;  4YAJ B;  4O2B F;  5I5Y A;  3ORR A;  3W1B A;  4YAK B;  5I5U A;  3HBL A;  5I5X A;  2ZGI A;  4PZ8 A;  4DLK A;  4O7W A;  1Z2O X;  1M6V A;  3T9F A;  4MA5 A;  4O86 A;  4HNV A;  4GLX A;  5EZY F;  4O4H F;  4O4J F;  5BMV F;  2YS7 A;  4CKC A;  3I12 A;  3RFC A;  5HV6 A;  4EG0 A;  1A9X A;  1GLV A;  1EUC B;  3TW7 A;  4ZI7 F;  5HNE A;  1X9N A;  3Q2O A;  2FPP B;  2R82 A;  2W6O A;  1EKP A;  2YW2 A;  2HGX A;  4EFE A;  2YZL A;  3WO0 A;  2R7N A;  1ZAU A;  2YZM A;  2HVS A;  3U54 A;  4FGR A;  3T9E A;  4O2A F;  2Z04 A;  4CKB A;  2HVR A;  1JLL B;  1FVI A;  3VOT A;  2HJW A;  2EJ2 A;  4HNT A;  1PK8 A;  5C8Y F;  4MV8 A;  4MA0 A;  4O4L F;  5BWR A;  4GLW A;  4O82 A;  4NYE A;  4YJ2 F;  2ZDH A;  3V4Z A;  2YL2 A;  2ZDQ A;  2R7K A;  4CHI A;  2DIK A;  1GGO A;  4L1K A;  5JVL A;  4LH7 A;  1JKJ B;  2HIV A;  4HNU A;  2ODT X;  2IP4 A;  2QK4 A;  5C1P A;  1CE8 A;  1XDN A;  5BYB A;  3N6R A;  1KC7 A;  2Q2U A;  2A1H A;  2YRX A;  3W5O A;  1TAE A;  5CM0 A; 
#chains in the Genus database with same CATH homology
 3BAA A;  4UCS A;  3RTX A;  4UCV A;  3GDE A;  3PN1 A;  3UQ8 A;  3BA9 A;  4UCT A;  1CKN B;  3JSL A;  3JSN A;  3TY8 A;  3NBZ B;  1A0I A;  4DRF A;  5FPR A;  1DGS A;  3VNN A;  5D1O B;  3W1B A;  3NBY B;  1P16 A;  4PZ8 A;  3BAB A;  2CFM A;  4PZ7 A;  3KYH C;  4GLX A;  3L2P A;  1CKN A;  1P8L A;  1X9N A;  1CKM A;  4UFZ A;  1S68 A;  4LH6 A;  5FPO A;  1XK5 A;  4EFE A;  1TA8 A;  4PZ6 A;  2HVS A;  1B04 A;  3RR5 A;  1CKO A;  3BA8 A;  3S24 A;  4E6N A;  2OWO A;  2HVR A;  1FVI A;  2VUG A;  4UCU A;  3NC0 B;  3TY9 A;  5DIS C;  3GB8 B;  1VS0 A;  5D1P A;  2HIX A;  3GJX B;  2Q2T A;  4CC5 A;  4EEQ A;  4EFB A;  4LH7 A;  5D1O A;  2HIV A;  2HVQ A;  4UCR A;  3W1G A;  4CC6 A;  4EQ5 A;  1XDN A;  3QWU A;  2Q2U A;  4UCO A;  3W5O A;  1TAE A;  1V9P A;  3TY5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3NBYB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations