3TY9 | Genus

Total Genus 127

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	127
sequence length	393
structure length	376
Chain Sequence	SMSRFAADPHWLIYLPPTMSPCETSKKEGMLEHPIEAFEYFRTRGVGKVVCEQKHMGSRAVVIVCKDSQVAEKRFGVLDGTAGICYTRTGRHFFDDMQLEAELIDRVRKVLDKSGFWGDFNTDWVCLDCELMPWSAKAQKLLEEQYSAVGISGRVVLDEAVKLLKQASLNADINELLQRFTERSEMMQKYVEAYRKYCWPVNSIDDLKLAPFHILATEGKVHSDKNHIWHMDTIAKYCTQDDSLIMATNHILVDVTDAESVDKGIKWWEDLTASGGEGMVVKPYDFIVKNELLQPAVKCRGREYLRIIYGPEYTMDENIERLRNRAVGKKRSLALREFSLGMEALERFVRNEPLYRVHECVFGVLALESEPVDPRL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Clostridium thermocellum
publication title	The adenylyltransferase domain of bacterial Pnkp defines a unique RNA ligase family. pubmed doi rcsb
molecule keywords	Polynucleotide 2',3'-cyclic phosphate phosphodiesterase / po
total genus	127
structure length	376
sequence length	393
chains with identical sequence	B, C, D
ec nomenclature	ec 6.5.1.3: RNA ligase (ATP).
pdb deposition date	2011-09-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16536	PNKP-ligase_C	PNKP adenylyltransferase domain, C-terminal region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.470.30	Alpha Beta	2-Layer Sandwich	D-amino Acid Aminotransferase; Chain A, domain 1	DNA ligase/mRNA capping enzyme	3ty9A00

1FVIA 3L2PA 3GJXB 4UFZA 2HVSA 4UCOA 4UCVA 3NBYB 1CKMA 1TA8A 3S24A 4GLXA 1TAEA 2Q2TA 4EEQA 1CKNB 3JSLA 4UCTA 1CKOA 4PZ7A 2HVRA 3BABA 3JSNA 3TY9A 3BA9A 4PZ6A 3NC0B 2VUGA 1P8LA 4LH6A 1XK5A 4UCRA 2CFMA 3W1GA 1DGSA 1CKNA 1P16A 1B04A 4LH7A 3BAAA 4PZ8A 2OWOA 4CC5A 3QWUA 3W1BA 2Q2UA 3GB8B 3W5OA 3PN1A 3UQ8A 4DRFA 5D1OB 4UCSA 2HIVA 1XDNA 3KYHC 5D1PA 4CC6A 3NBZB 5FPRA 4EFBA 4E6NA 5DISC 3GDEA 3RR5A 2HVQA 1A0IA 1S68A 3TY8A 5D1OA 4EQ5A 5FPOA 4UCUA 3BA8A 3RTXA 1V9PA 3TY5A 1VS0A 1X9NA 2HIXA 4EFEA 3VNNA
chains in the Genus database with same CATH superfamily

5BWTA 1BXRA 4O2BF 3ORRA 5JQGF 3U9TA 2HHFB 1IOWA 4UFZA 1VKZA 2YW2A 3MWEA 3KAJA 3NBYB 1CKMA 4FFLA 4RCNA 2W70A 4CE5A 2YZLA 2X5RA 1C3OA 5KKNB 5FNVF 3T9FA 5LOVF 2YRXA 1DAAA 1CKNB 1M0WA 5HNEA 5FR9A 1KT8A 1M6VA 1AUXA 1Z2PX 2A1HA 4PZ7A 1KJ9A 4TV8F 3RFCA 5CR5A 2I8CA 3BA9A 1OBDA 2OLSA 3TW6A 2W6QA 4HN2A 4PZ6A 1I1KA 3KALA 1BNCA 3NC0B 4O4HF 1I1MA 4Y8VB 3R5HA 4M9UA 4ME6A 4DAAA 4LH6A 5BPFA 2FPGB 1JLLB 1G2WA 2R7LA 3SE7A 1IYDA 2XD4A 1P16A 2GQRA 5DGHA 4O7YA 1CQIB 2J9GA 5LA6F 3W1BA 4E4TA 2FB9A 4IHJF 1EYZA 3GLKA 3V4ZA 4O7NA 3JZFA 1WRVA 3PN1A 4FE2A 5DGIA 3LULA 3ETHA 3TEKA 4UCSA 5I5VA 3KYHC 4DIMA 1JKJB 1EKVA 2W6ZA 3I12A 5K2MA 4EFBA 5C1OA 3OUZA 1AUVA 4E6NA 3G8CA 1E4EB 2V59A 2QF7A 2X0SA 1A9XA 1PK8A 3R5XA 5CA0F 5KX5F 4O7ZA 1JDEA 1Z2NX 3KREA 4FFPA 4CKCA 4CKBA 4YB8B 2PVPA 4MV6A 4XYMB 4MA0A 4QSHA 1WR2A 5H80A 3AW8A 4O7RA 4C5BA 4MV3A 2PN1A 2QK4A 5KS8A 1KEEA 2ZDGA 2NU8B 2ZGIA 1W93A 4EGQA 5BMVF 3RV4A 3JZIA 2WYOA 3LP8A 3ETJA 3T7AA 3VPBA 3U55A 4O84A 3VNNA 2YZMA 2HHFA 3PFFA 3UZOA 2NU6B 3WWHA 1EUDB 4L1KA 4WBNF 2W6NA 3HT5A 2C00A 2FPPB 1KTAA 4TM5A 3UFXB 5BWWA 1TA8A 2Z04A 4CHIA 4O4IF 1ET0A 1GSOA 5C8YF 3Q2OA 1Z2OX 1EKPA 2COIA 3TW7A 1IOVA 3RV3A 2Q2TA 4EEQA 2W6PA 4NZNA 3UZBA 1CQJB 2EJ3A 2HVRA 2W71A 5EZYF 3JSNA 5JQWA 4MA5A 3T9BA 5I60A 3JZ6A 4MV9A 5HBRB 4DLKA 3DTGA 4O4JF 2Q7DA 1I1LA 2YZGA 4UCRA 3W1GA 1DGSA 4Q4DA 3VOTA 2CNVA 3DF7A 1VBGA 1GGOA 1B04A 4LH7A 2DABA 3BAAA 4C5CA 2OWOA 4FFMA 1GLVA 2VR1A 4FGRA 1KJ8A 5LXTF 2Q2UA 3TIGA 2CNUA 2NU7B 2FPIB 3GB8B 3W5OA 5BYAA 4DRFA 3VMMA 4YBZB 3TINA 2CZGA 1M0TA 3G8DA 4CC6A 5DAAA 4UUGA 4MV7A 2HJWA 5GONF 2ABJA 4TVIA 4XX0B 2HVQA 2XCLA 3LQSA 1VBHA 4XYLB 5D1OA 1I2KA 4I55F 4HQ6A 4RZQA 2ZDHA 5FPOA 4MV1A 3K3PA 4O82A 3RTXA 2HGXA 4O7WA 3TY5A 3AX6A 4CMFA 4EG0A 2R7MA 3WO1A 2GPSA 2PBZA 3K5IA 3BG5A 3RUPA 3DAAA 1DV2A 2HG8A 2VQDA 4O83A 1T36A 2GPWA 3L2PA 2GLTA 3GJXB 4EGJA 4UCOA 4UCVA 4TV9F 3S24A 1KJIA 2DLNA 3QFFA 3LWBA 1EKFA 1UC9A 3HB9A 4PBCA 2HDKA 4JXUA 1I7LA 3VPDA 2EIYA 2R82A 3Q1KA 3JRWA 4UCTA 5I5XA 2DZDA 2R7KA 1CKOA 3NUAA 5JVLA 3E5NA 4HNUA 1A48A 3T9DA 2VUGA 1KC7A 1P8LA 2YYAA 1XK5A 2P0AA 5J2TF 4YJ3F 1CKNA 4TUYF 4PZ8A 2DWCA 4O81A 2ODTX 3BACA 4WHXA 5E25A 4FFNA 3T9AA 5I5WA 2R87A 4I4TF 4IWYA 4O7VA 1KJJA 3K5HA 2HIVA 1XDNA 5CA1F 3JRXA 5FPRA 3WWJA 5DISC 1A3GA 1ULZA 5LP6F 4I50F 3GDEA 3UYYA 1PX2A 4YAKB 2NUAB 4M0JA 5J2UF 2R86A 3SNOA 5K3WA 1S68A 3TY8A 4FFOA 1B6SA 3QQMA 4EQ5A 2SCUB 2IP4A 4GLWA 4O7TA 5I5SA 4O7SA 4UCUA 4CMDA 5I47A 2QB5A 2EJ0A 1E4EA 3VPCA 2HGWA 3T54A 4NZOA 1JDBB 4YJ2F 1CS0A 1X9NA 4EFEA 5BWRA 2DAAA 1I7NA 2Z02A 5BWXA 5BWVA 2V5AA 4IWXA 5CAEB 5JVDF 3U54A 1FVIA 5I5TA 2YWVA 2I87A 2YS7A 2HVSA 2YRWA 3ORQA 1UC8A 1DIKA 4GLXA 4XZ3B 1EUCB 5IYZF 3N6RA 4K6NA 3U9SA 4ZOLF 1OBGA 1TAEA 2R84A 2V58A 1DV1A 3TQTA 4NZMA 1ZAUA 3SGIA 1CE8A 3GIDA 3JSLA 3OUUA 4O4LF 1EZ1A 3KAKA 3T9CA 3WO0A 2W6MA 3BABA 3WNZA 1C30A 3TY9A 4CKEA 3VA7A 5CM0A 2R7NA 3HBLA 1KBLA 2EJ2A 4NYEA 1IYEA 2GQSA 2Y4RA 5BPHA 2CFMA 5LYJF 5D8DA 4HNVA 2R85A 2VPQA 4C5AA 4YAJB 5C1PA 2COJA 4CC5A 3R23A 3QWUA 5I5YA 5HV6A 1I2LA 5CE8A 4O7LA 4ZHQF 5CB4F 2W6OA 3MJFA 2DIKA 5BWUA 3V4SA 3N8DA 3UQ8A 4HR7A 1GSHA 5D1OB 3U0GA 3HO8A 1KJQA 3R9RA 4DQNA 5D1PA 1A0GA 3NBZB 2COGA 2YL2A 3DTFA 2NU9B 3WWIA 2I80A 5JH7F 4IZOA 3RR5A 5BYBA 4HNTA 4O2AF 1A0IA 3T99A 2ZDQA 3MWDA 3TIIA 3R5FA 5DMXA 4MV4A 3T9EA 2CNQA 4ZQIA 2YZNA 2FP4B 4MV8A 1SCUB 4O86A 1KUTA 1GSAA 4IIJF 3BA8A 4Q4CA 4FU0A 4FFRA 1V9PA 1W96A 1VS0A 2HGSA 3CSWA 3CEBA 1B6RA 2HIXA 5I5UA 1EHIA 2YS6A 4MAMA 4ZI7F
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1FVI A;  3L2P A;  3GJX B;  4UFZ A;  2HVS A;  4UCO A;  4UCV A;  3NBY B;  1CKM A;  1TA8 A;  3S24 A;  4GLX A;  1TAE A;  2Q2T A;  4EEQ A;  1CKN B;  3JSL A;  4UCT A;  1CKO A;  4PZ7 A;  2HVR A;  3BAB A;  3JSN A;  3TY9 A;  3BA9 A;  4PZ6 A;  3NC0 B;  2VUG A;  1P8L A;  4LH6 A;  1XK5 A;  4UCR A;  2CFM A;  3W1G A;  1DGS A;  1CKN A;  1P16 A;  1B04 A;  4LH7 A;  3BAA A;  4PZ8 A;  2OWO A;  4CC5 A;  3QWU A;  3W1B A;  2Q2U A;  3GB8 B;  3W5O A;  3PN1 A;  3UQ8 A;  4DRF A;  5D1O B;  4UCS A;  2HIV A;  1XDN A;  3KYH C;  5D1P A;  4CC6 A;  3NBZ B;  5FPR A;  4EFB A;  4E6N A;  5DIS C;  3GDE A;  3RR5 A;  2HVQ A;  1A0I A;  1S68 A;  3TY8 A;  5D1O A;  4EQ5 A;  5FPO A;  4UCU A;  3BA8 A;  3RTX A;  1V9P A;  3TY5 A;  1VS0 A;  1X9N A;  2HIX A;  4EFE A;  3VNN A; 
#chains in the Genus database with same CATH topology
 5BWT A;  1BXR A;  4O2B F;  3ORR A;  5JQG F;  3U9T A;  2HHF B;  1IOW A;  4UFZ A;  1VKZ A;  2YW2 A;  3MWE A;  3KAJ A;  3NBY B;  1CKM A;  4FFL A;  4RCN A;  2W70 A;  4CE5 A;  2YZL A;  2X5R A;  1C3O A;  5KKN B;  5FNV F;  3T9F A;  5LOV F;  2YRX A;  1DAA A;  1CKN B;  1M0W A;  5HNE A;  5FR9 A;  1KT8 A;  1M6V A;  1AUX A;  1Z2P X;  2A1H A;  4PZ7 A;  1KJ9 A;  4TV8 F;  3RFC A;  5CR5 A;  2I8C A;  3BA9 A;  1OBD A;  2OLS A;  3TW6 A;  2W6Q A;  4HN2 A;  4PZ6 A;  1I1K A;  3KAL A;  1BNC A;  3NC0 B;  4O4H F;  1I1M A;  4Y8V B;  3R5H A;  4M9U A;  4ME6 A;  4DAA A;  4LH6 A;  5BPF A;  2FPG B;  1JLL B;  1G2W A;  2R7L A;  3SE7 A;  1IYD A;  2XD4 A;  1P16 A;  2GQR A;  5DGH A;  4O7Y A;  1CQI B;  2J9G A;  5LA6 F;  3W1B A;  4E4T A;  2FB9 A;  4IHJ F;  1EYZ A;  3GLK A;  3V4Z A;  4O7N A;  3JZF A;  1WRV A;  3PN1 A;  4FE2 A;  5DGI A;  3LUL A;  3ETH A;  3TEK A;  4UCS A;  5I5V A;  3KYH C;  4DIM A;  1JKJ B;  1EKV A;  2W6Z A;  3I12 A;  5K2M A;  4EFB A;  5C1O A;  3OUZ A;  1AUV A;  4E6N A;  3G8C A;  1E4E B;  2V59 A;  2QF7 A;  2X0S A;  1A9X A;  1PK8 A;  3R5X A;  5CA0 F;  5KX5 F;  4O7Z A;  1JDE A;  1Z2N X;  3KRE A;  4FFP A;  4CKC A;  4CKB A;  4YB8 B;  2PVP A;  4MV6 A;  4XYM B;  4MA0 A;  4QSH A;  1WR2 A;  5H80 A;  3AW8 A;  4O7R A;  4C5B A;  4MV3 A;  2PN1 A;  2QK4 A;  5KS8 A;  1KEE A;  2ZDG A;  2NU8 B;  2ZGI A;  1W93 A;  4EGQ A;  5BMV F;  3RV4 A;  3JZI A;  2WYO A;  3LP8 A;  3ETJ A;  3T7A A;  3VPB A;  3U55 A;  4O84 A;  3VNN A;  2YZM A;  2HHF A;  3PFF A;  3UZO A;  2NU6 B;  3WWH A;  1EUD B;  4L1K A;  4WBN F;  2W6N A;  3HT5 A;  2C00 A;  2FPP B;  1KTA A;  4TM5 A;  3UFX B;  5BWW A;  1TA8 A;  2Z04 A;  4CHI A;  4O4I F;  1ET0 A;  1GSO A;  5C8Y F;  3Q2O A;  1Z2O X;  1EKP A;  2COI A;  3TW7 A;  1IOV A;  3RV3 A;  2Q2T A;  4EEQ A;  2W6P A;  4NZN A;  3UZB A;  1CQJ B;  2EJ3 A;  2HVR A;  2W71 A;  5EZY F;  3JSN A;  5JQW A;  4MA5 A;  3T9B A;  5I60 A;  3JZ6 A;  4MV9 A;  5HBR B;  4DLK A;  3DTG A;  4O4J F;  2Q7D A;  1I1L A;  2YZG A;  4UCR A;  3W1G A;  1DGS A;  4Q4D A;  3VOT A;  2CNV A;  3DF7 A;  1VBG A;  1GGO A;  1B04 A;  4LH7 A;  2DAB A;  3BAA A;  4C5C A;  2OWO A;  4FFM A;  1GLV A;  2VR1 A;  4FGR A;  1KJ8 A;  5LXT F;  2Q2U A;  3TIG A;  2CNU A;  2NU7 B;  2FPI B;  3GB8 B;  3W5O A;  5BYA A;  4DRF A;  3VMM A;  4YBZ B;  3TIN A;  2CZG A;  1M0T A;  3G8D A;  4CC6 A;  5DAA A;  4UUG A;  4MV7 A;  2HJW A;  5GON F;  2ABJ A;  4TVI A;  4XX0 B;  2HVQ A;  2XCL A;  3LQS A;  1VBH A;  4XYL B;  5D1O A;  1I2K A;  4I55 F;  4HQ6 A;  4RZQ A;  2ZDH A;  5FPO A;  4MV1 A;  3K3P A;  4O82 A;  3RTX A;  2HGX A;  4O7W A;  3TY5 A;  3AX6 A;  4CMF A;  4EG0 A;  2R7M A;  3WO1 A;  2GPS A;  2PBZ A;  3K5I A;  3BG5 A;  3RUP A;  3DAA A;  1DV2 A;  2HG8 A;  2VQD A;  4O83 A;  1T36 A;  2GPW A;  3L2P A;  2GLT A;  3GJX B;  4EGJ A;  4UCO A;  4UCV A;  4TV9 F;  3S24 A;  1KJI A;  2DLN A;  3QFF A;  3LWB A;  1EKF A;  1UC9 A;  3HB9 A;  4PBC A;  2HDK A;  4JXU A;  1I7L A;  3VPD A;  2EIY A;  2R82 A;  3Q1K A;  3JRW A;  4UCT A;  5I5X A;  2DZD A;  2R7K A;  1CKO A;  3NUA A;  5JVL A;  3E5N A;  4HNU A;  1A48 A;  3T9D A;  2VUG A;  1KC7 A;  1P8L A;  2YYA A;  1XK5 A;  2P0A A;  5J2T F;  4YJ3 F;  1CKN A;  4TUY F;  4PZ8 A;  2DWC A;  4O81 A;  2ODT X;  3BAC A;  4WHX A;  5E25 A;  4FFN A;  3T9A A;  5I5W A;  2R87 A;  4I4T F;  4IWY A;  4O7V A;  1KJJ A;  3K5H A;  2HIV A;  1XDN A;  5CA1 F;  3JRX A;  5FPR A;  3WWJ A;  5DIS C;  1A3G A;  1ULZ A;  5LP6 F;  4I50 F;  3GDE A;  3UYY A;  1PX2 A;  4YAK B;  2NUA B;  4M0J A;  5J2U F;  2R86 A;  3SNO A;  5K3W A;  1S68 A;  3TY8 A;  4FFO A;  1B6S A;  3QQM A;  4EQ5 A;  2SCU B;  2IP4 A;  4GLW A;  4O7T A;  5I5S A;  4O7S A;  4UCU A;  4CMD A;  5I47 A;  2QB5 A;  2EJ0 A;  1E4E A;  3VPC A;  2HGW A;  3T54 A;  4NZO A;  1JDB B;  4YJ2 F;  1CS0 A;  1X9N A;  4EFE A;  5BWR A;  2DAA A;  1I7N A;  2Z02 A;  5BWX A;  5BWV A;  2V5A A;  4IWX A;  5CAE B;  5JVD F;  3U54 A;  1FVI A;  5I5T A;  2YWV A;  2I87 A;  2YS7 A;  2HVS A;  2YRW A;  3ORQ A;  1UC8 A;  1DIK A;  4GLX A;  4XZ3 B;  1EUC B;  5IYZ F;  3N6R A;  4K6N A;  3U9S A;  4ZOL F;  1OBG A;  1TAE A;  2R84 A;  2V58 A;  1DV1 A;  3TQT A;  4NZM A;  1ZAU A;  3SGI A;  1CE8 A;  3GID A;  3JSL A;  3OUU A;  4O4L F;  1EZ1 A;  3KAK A;  3T9C A;  3WO0 A;  2W6M A;  3BAB A;  3WNZ A;  1C30 A;  3TY9 A;  4CKE A;  3VA7 A;  5CM0 A;  2R7N A;  3HBL A;  1KBL A;  2EJ2 A;  4NYE A;  1IYE A;  2GQS A;  2Y4R A;  5BPH A;  2CFM A;  5LYJ F;  5D8D A;  4HNV A;  2R85 A;  2VPQ A;  4C5A A;  4YAJ B;  5C1P A;  2COJ A;  4CC5 A;  3R23 A;  3QWU A;  5I5Y A;  5HV6 A;  1I2L A;  5CE8 A;  4O7L A;  4ZHQ F;  5CB4 F;  2W6O A;  3MJF A;  2DIK A;  5BWU A;  3V4S A;  3N8D A;  3UQ8 A;  4HR7 A;  1GSH A;  5D1O B;  3U0G A;  3HO8 A;  1KJQ A;  3R9R A;  4DQN A;  5D1P A;  1A0G A;  3NBZ B;  2COG A;  2YL2 A;  3DTF A;  2NU9 B;  3WWI A;  2I80 A;  5JH7 F;  4IZO A;  3RR5 A;  5BYB A;  4HNT A;  4O2A F;  1A0I A;  3T99 A;  2ZDQ A;  3MWD A;  3TII A;  3R5F A;  5DMX A;  4MV4 A;  3T9E A;  2CNQ A;  4ZQI A;  2YZN A;  2FP4 B;  4MV8 A;  1SCU B;  4O86 A;  1KUT A;  1GSA A;  4IIJ F;  3BA8 A;  4Q4C A;  4FU0 A;  4FFR A;  1V9P A;  1W96 A;  1VS0 A;  2HGS A;  3CSW A;  3CEB A;  1B6R A;  2HIX A;  5I5U A;  1EHI A;  2YS6 A;  4MAM A;  4ZI7 F; 
#chains in the Genus database with same CATH homology
 1FVI A;  3L2P A;  3GJX B;  4UFZ A;  2HVS A;  4UCO A;  4UCV A;  3NBY B;  1CKM A;  1TA8 A;  3S24 A;  4GLX A;  1TAE A;  2Q2T A;  4EEQ A;  1CKN B;  3JSL A;  4UCT A;  1CKO A;  4PZ7 A;  2HVR A;  3BAB A;  3JSN A;  3TY9 A;  3BA9 A;  4PZ6 A;  3NC0 B;  2VUG A;  1P8L A;  4LH6 A;  1XK5 A;  4UCR A;  2CFM A;  3W1G A;  1DGS A;  1CKN A;  1P16 A;  1B04 A;  4LH7 A;  3BAA A;  4PZ8 A;  2OWO A;  4CC5 A;  3QWU A;  3W1B A;  2Q2U A;  3GB8 B;  3W5O A;  3PN1 A;  3UQ8 A;  4DRF A;  5D1O B;  4UCS A;  2HIV A;  1XDN A;  3KYH C;  5D1P A;  4CC6 A;  3NBZ B;  5FPR A;  4EFB A;  4E6N A;  5DIS C;  3GDE A;  3RR5 A;  2HVQ A;  1A0I A;  1S68 A;  3TY8 A;  5D1O A;  4EQ5 A;  5FPO A;  4UCU A;  3BA8 A;  3RTX A;  1V9P A;  3TY5 A;  1VS0 A;  1X9N A;  2HIX A;  4EFE A;  3VNN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3TY9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations